data_3GGG
#
_model_server_result.job_id            j-dCgTavutuiI9B4cmz32g 
_model_server_result.datetime_utc      '2024-12-15 07:34:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ggg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":5686}' 
#
_entry.id    3GGG 
#
_exptl.entry_id    3GGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GGG 
_cell.length_a            79.431 
_cell.length_b            93.691 
_cell.length_c            163.656 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,H,K,M 1 1 
B,D,F,I,J,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 224 n n 
PA O2A NAD sing 225 n n 
PA O5B NAD sing 226 n n 
PA O3 NAD sing 227 n n 
O2A HOA2 NAD sing 228 n n 
O5B C5B NAD sing 229 n n 
C5B C4B NAD sing 230 n n 
C5B H51A NAD sing 231 n n 
C5B H52A NAD sing 232 n n 
C4B O4B NAD sing 233 n n 
C4B C3B NAD sing 234 n n 
C4B H4B NAD sing 235 n n 
O4B C1B NAD sing 236 n n 
C3B O3B NAD sing 237 n n 
C3B C2B NAD sing 238 n n 
C3B H3B NAD sing 239 n n 
O3B HO3A NAD sing 240 n n 
C2B O2B NAD sing 241 n n 
C2B C1B NAD sing 242 n n 
C2B H2B NAD sing 243 n n 
O2B HO2A NAD sing 244 n n 
C1B N9A NAD sing 245 n n 
C1B H1B NAD sing 246 n n 
N9A C8A NAD sing 247 n y 
N9A C4A NAD sing 248 n y 
C8A N7A NAD doub 249 n y 
C8A H8A NAD sing 250 n n 
N7A C5A NAD sing 251 n y 
C5A C6A NAD sing 252 n y 
C5A C4A NAD doub 253 n y 
C6A N6A NAD sing 254 n n 
C6A N1A NAD doub 255 n y 
N6A H61A NAD sing 256 n n 
N6A H62A NAD sing 257 n n 
N1A C2A NAD sing 258 n y 
C2A N3A NAD doub 259 n y 
C2A H2A NAD sing 260 n n 
N3A C4A NAD sing 261 n y 
O3 PN NAD sing 262 n n 
PN O1N NAD doub 263 n n 
PN O2N NAD sing 264 n n 
PN O5D NAD sing 265 n n 
O5D C5D NAD sing 266 n n 
C5D C4D NAD sing 267 n n 
C5D H51N NAD sing 268 n n 
C5D H52N NAD sing 269 n n 
C4D O4D NAD sing 270 n n 
C4D C3D NAD sing 271 n n 
C4D H4D NAD sing 272 n n 
O4D C1D NAD sing 273 n n 
C3D O3D NAD sing 274 n n 
C3D C2D NAD sing 275 n n 
C3D H3D NAD sing 276 n n 
O3D HO3N NAD sing 277 n n 
C2D O2D NAD sing 278 n n 
C2D C1D NAD sing 279 n n 
C2D H2D NAD sing 280 n n 
O2D HO2N NAD sing 281 n n 
C1D N1N NAD sing 282 n n 
C1D H1D NAD sing 283 n n 
N1N C2N NAD sing 284 n y 
N1N C6N NAD doub 285 n y 
C2N C3N NAD doub 286 n y 
C2N H2N NAD sing 287 n n 
C3N C7N NAD sing 288 n n 
C3N C4N NAD sing 289 n y 
C7N O7N NAD doub 290 n n 
C7N N7N NAD sing 291 n n 
N7N H71N NAD sing 292 n n 
N7N H72N NAD sing 293 n n 
C4N C5N NAD doub 294 n y 
C4N H4N NAD sing 295 n n 
C5N C6N NAD sing 296 n y 
C5N H5N NAD sing 297 n n 
C6N H6N NAD sing 298 n n 
#
_atom_sites.entry_id                     3GGG 
_atom_sites.fract_transf_matrix[1][1]    0.01259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD D 1 6686 6686 NAD NAD . 
F 2 NAD A 1 3686 3686 NAD NAD . 
G 2 NAD B 1 4686 4686 NAD NAD . 
H 3 TYR B 1 6959 6959 TYR TYR . 
I 2 NAD C 1 5686 5686 NAD NAD . 
J 3 TYR C 1 5959 5959 TYR TYR . 
K 4 HOH D 1 1007 1007 HOH HOH . 
K 4 HOH D 2 1009 1009 HOH HOH . 
K 4 HOH D 3 1013 1013 HOH HOH . 
K 4 HOH D 4 1014 1014 HOH HOH . 
K 4 HOH D 5 1017 1017 HOH HOH . 
K 4 HOH D 6 1021 1021 HOH HOH . 
K 4 HOH D 7 1029 1029 HOH HOH . 
K 4 HOH D 8 1031 1031 HOH HOH . 
K 4 HOH D 9 1032 1032 HOH HOH . 
K 4 HOH D 10 1034 1034 HOH HOH . 
K 4 HOH D 11 1039 1039 HOH HOH . 
K 4 HOH D 12 1053 1053 HOH HOH . 
K 4 HOH D 13 1058 1058 HOH HOH . 
K 4 HOH D 14 1061 1061 HOH HOH . 
K 4 HOH D 15 1071 1071 HOH HOH . 
K 4 HOH D 16 1075 1075 HOH HOH . 
K 4 HOH D 17 1079 1079 HOH HOH . 
K 4 HOH D 18 1091 1091 HOH HOH . 
K 4 HOH D 19 1102 1102 HOH HOH . 
K 4 HOH D 20 1115 1115 HOH HOH . 
K 4 HOH D 21 1117 1117 HOH HOH . 
K 4 HOH D 22 1121 1121 HOH HOH . 
K 4 HOH D 23 1135 1135 HOH HOH . 
K 4 HOH D 24 1219 1219 HOH HOH . 
K 4 HOH D 25 1249 1249 HOH HOH . 
K 4 HOH D 26 1333 1333 HOH HOH . 
K 4 HOH D 27 1392 1392 HOH HOH . 
L 4 HOH A 1 1001 1001 HOH HOH . 
L 4 HOH A 2 1004 1004 HOH HOH . 
L 4 HOH A 3 1015 1015 HOH HOH . 
L 4 HOH A 4 1022 1022 HOH HOH . 
L 4 HOH A 5 1030 1030 HOH HOH . 
L 4 HOH A 6 1041 1041 HOH HOH . 
L 4 HOH A 7 1044 1044 HOH HOH . 
L 4 HOH A 8 1046 1046 HOH HOH . 
L 4 HOH A 9 1052 1052 HOH HOH . 
L 4 HOH A 10 1060 1060 HOH HOH . 
L 4 HOH A 11 1072 1072 HOH HOH . 
L 4 HOH A 12 1096 1096 HOH HOH . 
L 4 HOH A 13 1097 1097 HOH HOH . 
L 4 HOH A 14 1101 1101 HOH HOH . 
L 4 HOH A 15 1106 1106 HOH HOH . 
L 4 HOH A 16 1126 1126 HOH HOH . 
L 4 HOH A 17 1127 1127 HOH HOH . 
L 4 HOH A 18 1145 1145 HOH HOH . 
L 4 HOH A 19 1147 1147 HOH HOH . 
L 4 HOH A 20 1179 1179 HOH HOH . 
L 4 HOH A 21 1201 1201 HOH HOH . 
L 4 HOH A 22 1203 1203 HOH HOH . 
L 4 HOH A 23 1204 1204 HOH HOH . 
L 4 HOH A 24 1213 1213 HOH HOH . 
L 4 HOH A 25 1233 1233 HOH HOH . 
L 4 HOH A 26 1306 1306 HOH HOH . 
L 4 HOH A 27 1316 1316 HOH HOH . 
L 4 HOH A 28 1339 1339 HOH HOH . 
L 4 HOH A 29 1404 1404 HOH HOH . 
M 4 HOH B 1 1002 1002 HOH HOH . 
M 4 HOH B 2 1005 1005 HOH HOH . 
M 4 HOH B 3 1008 1008 HOH HOH . 
M 4 HOH B 4 1010 1010 HOH HOH . 
M 4 HOH B 5 1016 1016 HOH HOH . 
M 4 HOH B 6 1019 1019 HOH HOH . 
M 4 HOH B 7 1023 1023 HOH HOH . 
M 4 HOH B 8 1033 1033 HOH HOH . 
M 4 HOH B 9 1036 1036 HOH HOH . 
M 4 HOH B 10 1040 1040 HOH HOH . 
M 4 HOH B 11 1042 1042 HOH HOH . 
M 4 HOH B 12 1048 1048 HOH HOH . 
M 4 HOH B 13 1051 1051 HOH HOH . 
M 4 HOH B 14 1054 1054 HOH HOH . 
M 4 HOH B 15 1065 1065 HOH HOH . 
M 4 HOH B 16 1067 1067 HOH HOH . 
M 4 HOH B 17 1074 1074 HOH HOH . 
M 4 HOH B 18 1080 1080 HOH HOH . 
M 4 HOH B 19 1083 1083 HOH HOH . 
M 4 HOH B 20 1087 1087 HOH HOH . 
M 4 HOH B 21 1090 1090 HOH HOH . 
M 4 HOH B 22 1092 1092 HOH HOH . 
M 4 HOH B 23 1104 1104 HOH HOH . 
M 4 HOH B 24 1138 1138 HOH HOH . 
M 4 HOH B 25 1148 1148 HOH HOH . 
M 4 HOH B 26 1149 1149 HOH HOH . 
M 4 HOH B 27 1163 1163 HOH HOH . 
M 4 HOH B 28 1177 1177 HOH HOH . 
M 4 HOH B 29 1182 1182 HOH HOH . 
M 4 HOH B 30 1209 1209 HOH HOH . 
M 4 HOH B 31 1224 1224 HOH HOH . 
M 4 HOH B 32 1232 1232 HOH HOH . 
M 4 HOH B 33 1252 1252 HOH HOH . 
M 4 HOH B 34 1289 1289 HOH HOH . 
M 4 HOH B 35 1488 1488 HOH HOH . 
N 4 HOH C 1 1003 1003 HOH HOH . 
N 4 HOH C 2 1011 1011 HOH HOH . 
N 4 HOH C 3 1012 1012 HOH HOH . 
N 4 HOH C 4 1018 1018 HOH HOH . 
N 4 HOH C 5 1020 1020 HOH HOH . 
N 4 HOH C 6 1024 1024 HOH HOH . 
N 4 HOH C 7 1026 1026 HOH HOH . 
N 4 HOH C 8 1028 1028 HOH HOH . 
N 4 HOH C 9 1037 1037 HOH HOH . 
N 4 HOH C 10 1043 1043 HOH HOH . 
N 4 HOH C 11 1045 1045 HOH HOH . 
N 4 HOH C 12 1055 1055 HOH HOH . 
N 4 HOH C 13 1056 1056 HOH HOH . 
N 4 HOH C 14 1057 1057 HOH HOH . 
N 4 HOH C 15 1062 1062 HOH HOH . 
N 4 HOH C 16 1066 1066 HOH HOH . 
N 4 HOH C 17 1068 1068 HOH HOH . 
N 4 HOH C 18 1069 1069 HOH HOH . 
N 4 HOH C 19 1070 1070 HOH HOH . 
N 4 HOH C 20 1073 1073 HOH HOH . 
N 4 HOH C 21 1077 1077 HOH HOH . 
N 4 HOH C 22 1094 1094 HOH HOH . 
N 4 HOH C 23 1098 1098 HOH HOH . 
N 4 HOH C 24 1103 1103 HOH HOH . 
N 4 HOH C 25 1107 1107 HOH HOH . 
N 4 HOH C 26 1108 1108 HOH HOH . 
N 4 HOH C 27 1109 1109 HOH HOH . 
N 4 HOH C 28 1111 1111 HOH HOH . 
N 4 HOH C 29 1125 1125 HOH HOH . 
N 4 HOH C 30 1129 1129 HOH HOH . 
N 4 HOH C 31 1151 1151 HOH HOH . 
N 4 HOH C 32 1173 1173 HOH HOH . 
N 4 HOH C 33 1217 1217 HOH HOH . 
N 4 HOH C 34 1225 1225 HOH HOH . 
N 4 HOH C 35 1226 1226 HOH HOH . 
N 4 HOH C 36 1227 1227 HOH HOH . 
N 4 HOH C 37 1299 1299 HOH HOH . 
N 4 HOH C 38 1326 1326 HOH HOH . 
N 4 HOH C 39 1378 1378 HOH HOH . 
N 4 HOH C 40 1484 1484 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 2 30.299 -46.758 -59.719 1 24.91 ? PA NAD 5686 C 1 
HETATM 2 O O1A NAD . . . I 2 31.294 -46.28 -58.745 1 26.31 ? O1A NAD 5686 C 1 
HETATM 3 O O2A NAD . . . I 2 30.236 -45.979 -60.985 1 31.36 ? O2A NAD 5686 C 1 
HETATM 4 O O5B NAD . . . I 2 30.975 -48.218 -59.928 1 28.04 ? O5B NAD 5686 C 1 
HETATM 5 C C5B NAD . . . I 2 30.507 -49.155 -60.932 1 26.85 ? C5B NAD 5686 C 1 
HETATM 6 C C4B NAD . . . I 2 31.725 -50.102 -61.284 1 27.12 ? C4B NAD 5686 C 1 
HETATM 7 O O4B NAD . . . I 2 31.139 -50.994 -62.215 1 31.21 ? O4B NAD 5686 C 1 
HETATM 8 C C3B NAD . . . I 2 32.943 -49.443 -62.032 1 25.89 ? C3B NAD 5686 C 1 
HETATM 9 O O3B NAD . . . I 2 34.304 -49.731 -61.519 1 30.12 ? O3B NAD 5686 C 1 
HETATM 10 C C2B NAD . . . I 2 32.72 -49.821 -63.493 1 28.05 ? C2B NAD 5686 C 1 
HETATM 11 O O2B NAD . . . I 2 33.904 -49.98 -64.231 1 33.25 ? O2B NAD 5686 C 1 
HETATM 12 C C1B NAD . . . I 2 32.098 -51.167 -63.268 1 31.1 ? C1B NAD 5686 C 1 
HETATM 13 N N9A NAD . . . I 2 31.319 -51.605 -64.416 1 29.55 ? N9A NAD 5686 C 1 
HETATM 14 C C8A NAD . . . I 2 30.531 -50.88 -65.242 1 24.9 ? C8A NAD 5686 C 1 
HETATM 15 N N7A NAD . . . I 2 29.94 -51.762 -66.112 1 25.43 ? N7A NAD 5686 C 1 
HETATM 16 C C5A NAD . . . I 2 30.393 -53.026 -65.884 1 26.22 ? C5A NAD 5686 C 1 
HETATM 17 C C6A NAD . . . I 2 30.213 -54.278 -66.499 1 30.87 ? C6A NAD 5686 C 1 
HETATM 18 N N6A NAD . . . I 2 29.323 -54.511 -67.482 1 33.25 ? N6A NAD 5686 C 1 
HETATM 19 N N1A NAD . . . I 2 30.845 -55.374 -65.94 1 30.12 ? N1A NAD 5686 C 1 
HETATM 20 C C2A NAD . . . I 2 31.697 -55.22 -64.842 1 24.25 ? C2A NAD 5686 C 1 
HETATM 21 N N3A NAD . . . I 2 31.878 -53.972 -64.303 1 24.81 ? N3A NAD 5686 C 1 
HETATM 22 C C4A NAD . . . I 2 31.245 -52.922 -64.796 1 25.7 ? C4A NAD 5686 C 1 
HETATM 23 O O3 NAD . . . I 2 28.757 -47.098 -59.278 1 27.18 ? O3 NAD 5686 C 1 
HETATM 24 P PN NAD . . . I 2 28.396 -47.449 -57.68 1 22.34 ? PN NAD 5686 C 1 
HETATM 25 O O1N NAD . . . I 2 29.463 -48.281 -57.109 1 18.89 ? O1N NAD 5686 C 1 
HETATM 26 O O2N NAD . . . I 2 28.029 -46.165 -57.086 1 26.84 ? O2N NAD 5686 C 1 
HETATM 27 O O5D NAD . . . I 2 27.152 -48.295 -58.049 1 22.81 ? O5D NAD 5686 C 1 
HETATM 28 C C5D NAD . . . I 2 27.346 -49.721 -58.158 1 20.83 ? C5D NAD 5686 C 1 
HETATM 29 C C4D NAD . . . I 2 25.974 -50.421 -58.002 1 23.78 ? C4D NAD 5686 C 1 
HETATM 30 O O4D NAD . . . I 2 25.424 -50.131 -56.728 1 23.39 ? O4D NAD 5686 C 1 
HETATM 31 C C3D NAD . . . I 2 24.881 -49.915 -58.942 1 24.22 ? C3D NAD 5686 C 1 
HETATM 32 O O3D NAD . . . I 2 24.038 -51.034 -59.271 1 22.7 ? O3D NAD 5686 C 1 
HETATM 33 C C2D NAD . . . I 2 23.998 -48.993 -58.139 1 23.83 ? C2D NAD 5686 C 1 
HETATM 34 O O2D NAD . . . I 2 22.628 -49.007 -58.525 1 23.11 ? O2D NAD 5686 C 1 
HETATM 35 C C1D NAD . . . I 2 24.088 -49.662 -56.789 1 22.15 ? C1D NAD 5686 C 1 
HETATM 36 N N1N NAD . . . I 2 24.031 -48.667 -55.684 1 27.72 ? N1N NAD 5686 C 1 
HETATM 37 C C2N NAD . . . I 2 24.648 -47.447 -55.746 1 24.47 ? C2N NAD 5686 C 1 
HETATM 38 C C3N NAD . . . I 2 24.537 -46.55 -54.672 1 31.39 ? C3N NAD 5686 C 1 
HETATM 39 C C7N NAD . . . I 2 25.146 -45.176 -54.678 1 31.35 ? C7N NAD 5686 C 1 
HETATM 40 O O7N NAD . . . I 2 24.568 -44.295 -53.803 1 33.08 ? O7N NAD 5686 C 1 
HETATM 41 N N7N NAD . . . I 2 26.218 -44.854 -55.37 1 27.5 ? N7N NAD 5686 C 1 
HETATM 42 C C4N NAD . . . I 2 23.878 -46.902 -53.48 1 26.17 ? C4N NAD 5686 C 1 
HETATM 43 C C5N NAD . . . I 2 23.279 -48.148 -53.419 1 25.42 ? C5N NAD 5686 C 1 
HETATM 44 C C6N NAD . . . I 2 23.365 -49.022 -54.512 1 26.86 ? C6N NAD 5686 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#