data_3GGJ # _model_server_result.job_id wqy1iQP6R00DpQXs0gLIXw _model_server_result.datetime_utc '2024-11-15 15:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ggj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":218}' # _entry.id 3GGJ # _exptl.entry_id 3GGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.212 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{2-[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethoxy]ethyl}phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GGJ _cell.length_a 111.189 _cell.length_b 72.754 _cell.length_c 51.387 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 72.754 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H14 N5 O5 P' _chem_comp.formula_weight 303.212 _chem_comp.id 25H _chem_comp.mon_nstd_flag . _chem_comp.name '{2-[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethoxy]ethyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 9-(2-phosphonoethoxyethyl)guanine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 25H sing 1 n n N1 C2 25H sing 2 n n C8 N7 25H doub 3 n y C8 N9 25H sing 4 n y C6 C5 25H sing 5 n n C6 O6 25H doub 6 n n N7 C5 25H sing 7 n y C5 C4 25H doub 8 n y C2 N3 25H doub 9 n n C2 N2 25H sing 10 n n OAD PAT 25H sing 11 n n PAT OAE 25H sing 12 n n PAT OAC 25H doub 13 n n PAT CAJ 25H sing 14 n n CAJ CAH 25H sing 15 n n CAH OAN 25H sing 16 n n OAN CAG 25H sing 17 n n CAG CAI 25H sing 18 n n CAI N9 25H sing 19 n n N9 C4 25H sing 20 n y C4 N3 25H sing 21 n n N1 HN1 25H sing 22 n n C8 H8 25H sing 23 n n OAD HOAD 25H sing 24 n n OAE HOAE 25H sing 25 n n CAJ HAJ 25H sing 26 n n CAJ HAJA 25H sing 27 n n CAH HAH 25H sing 28 n n CAH HAHA 25H sing 29 n n CAG HAG 25H sing 30 n n CAG HAGA 25H sing 31 n n CAI HAI 25H sing 32 n n CAI HAIA 25H sing 33 n n N2 HN2 25H sing 34 n n N2 HN2A 25H sing 35 n n # _atom_sites.entry_id 3GGJ _atom_sites.fract_transf_matrix[1][1] 0.008994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 25H A 1 218 2 25H H25 . D 2 25H B 1 218 1 25H H25 . E 3 HOH A 1 219 1 HOH HOH . E 3 HOH A 2 220 2 HOH HOH . E 3 HOH A 3 221 4 HOH HOH . E 3 HOH A 4 222 5 HOH HOH . E 3 HOH A 5 223 6 HOH HOH . E 3 HOH A 6 224 7 HOH HOH . E 3 HOH A 7 225 12 HOH HOH . E 3 HOH A 8 226 13 HOH HOH . E 3 HOH A 9 227 14 HOH HOH . E 3 HOH A 10 228 16 HOH HOH . E 3 HOH A 11 229 18 HOH HOH . E 3 HOH A 12 230 21 HOH HOH . E 3 HOH A 13 231 24 HOH HOH . E 3 HOH A 14 232 25 HOH HOH . E 3 HOH A 15 233 27 HOH HOH . E 3 HOH A 16 234 29 HOH HOH . E 3 HOH A 17 235 30 HOH HOH . E 3 HOH A 18 236 31 HOH HOH . E 3 HOH A 19 237 32 HOH HOH . E 3 HOH A 20 238 33 HOH HOH . E 3 HOH A 21 239 34 HOH HOH . E 3 HOH A 22 240 35 HOH HOH . E 3 HOH A 23 241 36 HOH HOH . E 3 HOH A 24 242 37 HOH HOH . E 3 HOH A 25 243 40 HOH HOH . E 3 HOH A 26 244 41 HOH HOH . E 3 HOH A 27 245 42 HOH HOH . E 3 HOH A 28 246 44 HOH HOH . E 3 HOH A 29 247 45 HOH HOH . E 3 HOH A 30 248 50 HOH HOH . E 3 HOH A 31 249 51 HOH HOH . E 3 HOH A 32 250 53 HOH HOH . E 3 HOH A 33 251 54 HOH HOH . E 3 HOH A 34 252 55 HOH HOH . E 3 HOH A 35 253 57 HOH HOH . E 3 HOH A 36 254 59 HOH HOH . E 3 HOH A 37 255 60 HOH HOH . E 3 HOH A 38 256 62 HOH HOH . E 3 HOH A 39 257 68 HOH HOH . E 3 HOH A 40 258 69 HOH HOH . E 3 HOH A 41 259 71 HOH HOH . E 3 HOH A 42 260 74 HOH HOH . E 3 HOH A 43 261 76 HOH HOH . E 3 HOH A 44 262 77 HOH HOH . E 3 HOH A 45 263 82 HOH HOH . E 3 HOH A 46 264 83 HOH HOH . E 3 HOH A 47 265 84 HOH HOH . E 3 HOH A 48 266 85 HOH HOH . E 3 HOH A 49 267 86 HOH HOH . E 3 HOH A 50 268 87 HOH HOH . E 3 HOH A 51 269 88 HOH HOH . E 3 HOH A 52 270 92 HOH HOH . E 3 HOH A 53 271 93 HOH HOH . E 3 HOH A 54 272 95 HOH HOH . E 3 HOH A 55 273 97 HOH HOH . E 3 HOH A 56 274 98 HOH HOH . E 3 HOH A 57 275 99 HOH HOH . E 3 HOH A 58 276 102 HOH HOH . E 3 HOH A 59 277 105 HOH HOH . E 3 HOH A 60 278 106 HOH HOH . E 3 HOH A 61 279 107 HOH HOH . E 3 HOH A 62 280 108 HOH HOH . F 3 HOH B 1 219 3 HOH HOH . F 3 HOH B 2 220 8 HOH HOH . F 3 HOH B 3 221 9 HOH HOH . F 3 HOH B 4 222 10 HOH HOH . F 3 HOH B 5 223 11 HOH HOH . F 3 HOH B 6 224 15 HOH HOH . F 3 HOH B 7 225 17 HOH HOH . F 3 HOH B 8 226 19 HOH HOH . F 3 HOH B 9 227 20 HOH HOH . F 3 HOH B 10 228 22 HOH HOH . F 3 HOH B 11 229 23 HOH HOH . F 3 HOH B 12 230 26 HOH HOH . F 3 HOH B 13 231 28 HOH HOH . F 3 HOH B 14 232 38 HOH HOH . F 3 HOH B 15 233 39 HOH HOH . F 3 HOH B 16 234 43 HOH HOH . F 3 HOH B 17 235 46 HOH HOH . F 3 HOH B 18 236 47 HOH HOH . F 3 HOH B 19 237 48 HOH HOH . F 3 HOH B 20 238 49 HOH HOH . F 3 HOH B 21 239 52 HOH HOH . F 3 HOH B 22 240 56 HOH HOH . F 3 HOH B 23 241 58 HOH HOH . F 3 HOH B 24 242 61 HOH HOH . F 3 HOH B 25 243 63 HOH HOH . F 3 HOH B 26 244 64 HOH HOH . F 3 HOH B 27 245 65 HOH HOH . F 3 HOH B 28 246 66 HOH HOH . F 3 HOH B 29 247 67 HOH HOH . F 3 HOH B 30 248 70 HOH HOH . F 3 HOH B 31 249 72 HOH HOH . F 3 HOH B 32 250 73 HOH HOH . F 3 HOH B 33 251 75 HOH HOH . F 3 HOH B 34 252 78 HOH HOH . F 3 HOH B 35 253 79 HOH HOH . F 3 HOH B 36 254 80 HOH HOH . F 3 HOH B 37 255 81 HOH HOH . F 3 HOH B 38 256 89 HOH HOH . F 3 HOH B 39 257 90 HOH HOH . F 3 HOH B 40 258 91 HOH HOH . F 3 HOH B 41 259 94 HOH HOH . F 3 HOH B 42 260 96 HOH HOH . F 3 HOH B 43 261 100 HOH HOH . F 3 HOH B 44 262 101 HOH HOH . F 3 HOH B 45 263 103 HOH HOH . F 3 HOH B 46 264 104 HOH HOH . F 3 HOH B 47 265 109 HOH HOH . F 3 HOH B 48 266 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 25H . . . C 2 18.786 53.51 6.71 1 23 ? N1 25H 218 A 1 HETATM 2 C C8 25H . . . C 2 20.645 57.136 8.661 1 24.8 ? C8 25H 218 A 1 HETATM 3 C C6 25H . . . C 2 19.95 53.905 7.301 1 24.22 ? C6 25H 218 A 1 HETATM 4 N N7 25H . . . C 2 21.078 55.87 8.405 1 24.75 ? N7 25H 218 A 1 HETATM 5 C C5 25H . . . C 2 20.071 55.207 7.779 1 23.75 ? C5 25H 218 A 1 HETATM 6 C C2 25H . . . C 2 17.755 54.39 6.593 1 22.59 ? C2 25H 218 A 1 HETATM 7 O OAD 25H . . . C 2 21.721 60.045 12.35 1 32.07 ? OAD 25H 218 A 1 HETATM 8 P PAT 25H . . . C 2 20.643 60.177 13.404 1 32.63 ? PAT 25H 218 A 1 HETATM 9 O OAE 25H . . . C 2 20.286 61.622 13.715 1 34.85 ? OAE 25H 218 A 1 HETATM 10 O OAC 25H . . . C 2 20.885 59.307 14.62 1 32.66 ? OAC 25H 218 A 1 HETATM 11 C CAJ 25H . . . C 2 19.11 59.538 12.683 1 30.13 ? CAJ 25H 218 A 1 HETATM 12 C CAH 25H . . . C 2 19.303 59.385 11.185 1 28.91 ? CAH 25H 218 A 1 HETATM 13 O OAN 25H . . . C 2 18.585 58.224 10.768 1 28.79 ? OAN 25H 218 A 1 HETATM 14 C CAG 25H . . . C 2 17.77 58.477 9.609 1 27.11 ? CAG 25H 218 A 1 HETATM 15 C CAI 25H . . . C 2 18.585 58.485 8.305 1 24.48 ? CAI 25H 218 A 1 HETATM 16 N N9 25H . . . C 2 19.386 57.27 8.199 1 24.39 ? N9 25H 218 A 1 HETATM 17 C C4 25H . . . C 2 19 56.09 7.649 1 24.03 ? C4 25H 218 A 1 HETATM 18 N N3 25H . . . C 2 17.848 55.658 7.058 1 21.88 ? N3 25H 218 A 1 HETATM 19 N N2 25H . . . C 2 16.606 53.997 6.006 1 22.49 ? N2 25H 218 A 1 HETATM 20 O O6 25H . . . C 2 20.969 53.082 7.424 1 23.88 ? O6 25H 218 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #