data_3GGP # _model_server_result.job_id BwJ6uj8fi5Cf-RP7Ouxp7g _model_server_result.datetime_utc '2024-12-15 05:39:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ggp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":312}' # _entry.id 3GGP # _exptl.entry_id 3GGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GGP _cell.length_a 82.061 _cell.length_b 92.361 _cell.length_c 163.83 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,K,M,O 1 1 B,D,G,H,I,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 246 n n PA O2A NAD sing 247 n n PA O5B NAD sing 248 n n PA O3 NAD sing 249 n n O2A HOA2 NAD sing 250 n n O5B C5B NAD sing 251 n n C5B C4B NAD sing 252 n n C5B H51A NAD sing 253 n n C5B H52A NAD sing 254 n n C4B O4B NAD sing 255 n n C4B C3B NAD sing 256 n n C4B H4B NAD sing 257 n n O4B C1B NAD sing 258 n n C3B O3B NAD sing 259 n n C3B C2B NAD sing 260 n n C3B H3B NAD sing 261 n n O3B HO3A NAD sing 262 n n C2B O2B NAD sing 263 n n C2B C1B NAD sing 264 n n C2B H2B NAD sing 265 n n O2B HO2A NAD sing 266 n n C1B N9A NAD sing 267 n n C1B H1B NAD sing 268 n n N9A C8A NAD sing 269 n y N9A C4A NAD sing 270 n y C8A N7A NAD doub 271 n y C8A H8A NAD sing 272 n n N7A C5A NAD sing 273 n y C5A C6A NAD sing 274 n y C5A C4A NAD doub 275 n y C6A N6A NAD sing 276 n n C6A N1A NAD doub 277 n y N6A H61A NAD sing 278 n n N6A H62A NAD sing 279 n n N1A C2A NAD sing 280 n y C2A N3A NAD doub 281 n y C2A H2A NAD sing 282 n n N3A C4A NAD sing 283 n y O3 PN NAD sing 284 n n PN O1N NAD doub 285 n n PN O2N NAD sing 286 n n PN O5D NAD sing 287 n n O5D C5D NAD sing 288 n n C5D C4D NAD sing 289 n n C5D H51N NAD sing 290 n n C5D H52N NAD sing 291 n n C4D O4D NAD sing 292 n n C4D C3D NAD sing 293 n n C4D H4D NAD sing 294 n n O4D C1D NAD sing 295 n n C3D O3D NAD sing 296 n n C3D C2D NAD sing 297 n n C3D H3D NAD sing 298 n n O3D HO3N NAD sing 299 n n C2D O2D NAD sing 300 n n C2D C1D NAD sing 301 n n C2D H2D NAD sing 302 n n O2D HO2N NAD sing 303 n n C1D N1N NAD sing 304 n n C1D H1D NAD sing 305 n n N1N C2N NAD sing 306 n y N1N C6N NAD doub 307 n y C2N C3N NAD doub 308 n y C2N H2N NAD sing 309 n n C3N C7N NAD sing 310 n n C3N C4N NAD sing 311 n y C7N O7N NAD doub 312 n n C7N N7N NAD sing 313 n n N7N H71N NAD sing 314 n n N7N H72N NAD sing 315 n n C4N C5N NAD doub 316 n y C4N H4N NAD sing 317 n n C5N C6N NAD sing 318 n y C5N H5N NAD sing 319 n n C6N H6N NAD sing 320 n n # _atom_sites.entry_id 3GGP _atom_sites.fract_transf_matrix[1][1] 0.012186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 312 1 NAD NAD . F 3 CL A 1 313 10 CL CL . G 2 NAD B 1 312 2 NAD NAD . H 4 HPP B 1 313 5 HPP HPP . I 3 CL B 1 314 9 CL CL . J 2 NAD C 1 312 3 NAD NAD . K 4 HPP C 1 313 6 HPP HPP . L 2 NAD D 1 312 4 NAD NAD . M 5 HOH A 1 1002 1002 HOH HOH . M 5 HOH A 2 1004 1004 HOH HOH . M 5 HOH A 3 1008 1008 HOH HOH . M 5 HOH A 4 1010 1010 HOH HOH . M 5 HOH A 5 1011 1011 HOH HOH . M 5 HOH A 6 1021 1021 HOH HOH . M 5 HOH A 7 1027 1027 HOH HOH . M 5 HOH A 8 1034 1034 HOH HOH . M 5 HOH A 9 1037 1037 HOH HOH . M 5 HOH A 10 1040 1040 HOH HOH . M 5 HOH A 11 1041 1041 HOH HOH . M 5 HOH A 12 1051 1051 HOH HOH . M 5 HOH A 13 1063 1063 HOH HOH . M 5 HOH A 14 1071 1071 HOH HOH . M 5 HOH A 15 1073 1073 HOH HOH . M 5 HOH A 16 1075 1075 HOH HOH . M 5 HOH A 17 1077 1077 HOH HOH . M 5 HOH A 18 1087 1087 HOH HOH . M 5 HOH A 19 1089 1089 HOH HOH . M 5 HOH A 20 1122 1122 HOH HOH . M 5 HOH A 21 1129 1129 HOH HOH . M 5 HOH A 22 1146 1146 HOH HOH . M 5 HOH A 23 1147 1147 HOH HOH . M 5 HOH A 24 1148 1148 HOH HOH . M 5 HOH A 25 1160 1160 HOH HOH . M 5 HOH A 26 1173 1173 HOH HOH . M 5 HOH A 27 1183 1183 HOH HOH . M 5 HOH A 28 1188 1188 HOH HOH . M 5 HOH A 29 1199 1199 HOH HOH . M 5 HOH A 30 1207 1207 HOH HOH . M 5 HOH A 31 1296 1296 HOH HOH . M 5 HOH A 32 1327 1327 HOH HOH . M 5 HOH A 33 1362 1362 HOH HOH . M 5 HOH A 34 1376 1376 HOH HOH . M 5 HOH A 35 1380 1380 HOH HOH . M 5 HOH A 36 1416 1416 HOH HOH . M 5 HOH A 37 1417 1417 HOH HOH . M 5 HOH A 38 1418 1418 HOH HOH . N 5 HOH B 1 1001 1001 HOH HOH . N 5 HOH B 2 1003 1003 HOH HOH . N 5 HOH B 3 1013 1013 HOH HOH . N 5 HOH B 4 1015 1015 HOH HOH . N 5 HOH B 5 1018 1018 HOH HOH . N 5 HOH B 6 1022 1022 HOH HOH . N 5 HOH B 7 1025 1025 HOH HOH . N 5 HOH B 8 1028 1028 HOH HOH . N 5 HOH B 9 1030 1030 HOH HOH . N 5 HOH B 10 1033 1033 HOH HOH . N 5 HOH B 11 1044 1044 HOH HOH . N 5 HOH B 12 1054 1054 HOH HOH . N 5 HOH B 13 1058 1058 HOH HOH . N 5 HOH B 14 1060 1060 HOH HOH . N 5 HOH B 15 1062 1062 HOH HOH . N 5 HOH B 16 1064 1064 HOH HOH . N 5 HOH B 17 1067 1067 HOH HOH . N 5 HOH B 18 1069 1069 HOH HOH . N 5 HOH B 19 1091 1091 HOH HOH . N 5 HOH B 20 1100 1100 HOH HOH . N 5 HOH B 21 1105 1105 HOH HOH . N 5 HOH B 22 1108 1108 HOH HOH . N 5 HOH B 23 1109 1109 HOH HOH . N 5 HOH B 24 1128 1128 HOH HOH . N 5 HOH B 25 1130 1130 HOH HOH . N 5 HOH B 26 1135 1135 HOH HOH . N 5 HOH B 27 1166 1166 HOH HOH . N 5 HOH B 28 1172 1172 HOH HOH . N 5 HOH B 29 1204 1204 HOH HOH . N 5 HOH B 30 1216 1216 HOH HOH . N 5 HOH B 31 1223 1223 HOH HOH . N 5 HOH B 32 1236 1236 HOH HOH . N 5 HOH B 33 1393 1393 HOH HOH . N 5 HOH B 34 1413 1413 HOH HOH . N 5 HOH B 35 1414 1414 HOH HOH . N 5 HOH B 36 1419 1419 HOH HOH . N 5 HOH B 37 1420 1420 HOH HOH . N 5 HOH B 38 1421 1421 HOH HOH . N 5 HOH B 39 1422 1422 HOH HOH . N 5 HOH B 40 1424 1424 HOH HOH . O 5 HOH C 1 1005 1005 HOH HOH . O 5 HOH C 2 1007 1007 HOH HOH . O 5 HOH C 3 1009 1009 HOH HOH . O 5 HOH C 4 1012 1012 HOH HOH . O 5 HOH C 5 1014 1014 HOH HOH . O 5 HOH C 6 1016 1016 HOH HOH . O 5 HOH C 7 1017 1017 HOH HOH . O 5 HOH C 8 1024 1024 HOH HOH . O 5 HOH C 9 1029 1029 HOH HOH . O 5 HOH C 10 1031 1031 HOH HOH . O 5 HOH C 11 1035 1035 HOH HOH . O 5 HOH C 12 1038 1038 HOH HOH . O 5 HOH C 13 1039 1039 HOH HOH . O 5 HOH C 14 1042 1042 HOH HOH . O 5 HOH C 15 1047 1047 HOH HOH . O 5 HOH C 16 1049 1049 HOH HOH . O 5 HOH C 17 1055 1055 HOH HOH . O 5 HOH C 18 1076 1076 HOH HOH . O 5 HOH C 19 1085 1085 HOH HOH . O 5 HOH C 20 1086 1086 HOH HOH . O 5 HOH C 21 1094 1094 HOH HOH . O 5 HOH C 22 1103 1103 HOH HOH . O 5 HOH C 23 1114 1114 HOH HOH . O 5 HOH C 24 1123 1123 HOH HOH . O 5 HOH C 25 1150 1150 HOH HOH . O 5 HOH C 26 1163 1163 HOH HOH . O 5 HOH C 27 1197 1197 HOH HOH . O 5 HOH C 28 1217 1217 HOH HOH . O 5 HOH C 29 1235 1235 HOH HOH . O 5 HOH C 30 1247 1247 HOH HOH . O 5 HOH C 31 1256 1256 HOH HOH . O 5 HOH C 32 1321 1321 HOH HOH . O 5 HOH C 33 1331 1331 HOH HOH . O 5 HOH C 34 1399 1399 HOH HOH . O 5 HOH C 35 1415 1415 HOH HOH . O 5 HOH C 36 1425 1425 HOH HOH . O 5 HOH C 37 1426 1426 HOH HOH . O 5 HOH C 38 1428 1428 HOH HOH . O 5 HOH C 39 1429 1429 HOH HOH . O 5 HOH C 40 1442 1442 HOH HOH . O 5 HOH C 41 1443 1443 HOH HOH . P 5 HOH D 1 1019 1019 HOH HOH . P 5 HOH D 2 1036 1036 HOH HOH . P 5 HOH D 3 1043 1043 HOH HOH . P 5 HOH D 4 1057 1057 HOH HOH . P 5 HOH D 5 1074 1074 HOH HOH . P 5 HOH D 6 1088 1088 HOH HOH . P 5 HOH D 7 1101 1101 HOH HOH . P 5 HOH D 8 1111 1111 HOH HOH . P 5 HOH D 9 1113 1113 HOH HOH . P 5 HOH D 10 1116 1116 HOH HOH . P 5 HOH D 11 1118 1118 HOH HOH . P 5 HOH D 12 1134 1134 HOH HOH . P 5 HOH D 13 1137 1137 HOH HOH . P 5 HOH D 14 1149 1149 HOH HOH . P 5 HOH D 15 1156 1156 HOH HOH . P 5 HOH D 16 1174 1174 HOH HOH . P 5 HOH D 17 1177 1177 HOH HOH . P 5 HOH D 18 1181 1181 HOH HOH . P 5 HOH D 19 1185 1185 HOH HOH . P 5 HOH D 20 1192 1192 HOH HOH . P 5 HOH D 21 1278 1278 HOH HOH . P 5 HOH D 22 1281 1281 HOH HOH . P 5 HOH D 23 1423 1423 HOH HOH . P 5 HOH D 24 1441 1441 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 28.872 -77.453 43.746 1 52.13 ? PA NAD 312 A 1 HETATM 2 O O1A NAD . . . E 2 30.013 -76.537 43.691 1 54.37 ? O1A NAD 312 A 1 HETATM 3 O O2A NAD . . . E 2 27.81 -77.18 44.728 1 53.28 ? O2A NAD 312 A 1 HETATM 4 O O5B NAD . . . E 2 29.255 -78.899 44.323 1 51.6 ? O5B NAD 312 A 1 HETATM 5 C C5B NAD . . . E 2 30.299 -79.667 43.807 1 45.49 ? C5B NAD 312 A 1 HETATM 6 C C4B NAD . . . E 2 30.331 -80.672 44.948 1 46.58 ? C4B NAD 312 A 1 HETATM 7 O O4B NAD . . . E 2 31.185 -81.744 44.536 1 48.46 ? O4B NAD 312 A 1 HETATM 8 C C3B NAD . . . E 2 30.967 -80.038 46.22 1 43.81 ? C3B NAD 312 A 1 HETATM 9 O O3B NAD . . . E 2 30.379 -80.618 47.376 1 40.45 ? O3B NAD 312 A 1 HETATM 10 C C2B NAD . . . E 2 32.416 -80.527 46.173 1 46.32 ? C2B NAD 312 A 1 HETATM 11 O O2B NAD . . . E 2 32.879 -80.774 47.478 1 44.51 ? O2B NAD 312 A 1 HETATM 12 C C1B NAD . . . E 2 32.236 -81.936 45.494 1 46.33 ? C1B NAD 312 A 1 HETATM 13 N N9A NAD . . . E 2 33.49 -82.433 44.889 1 42.49 ? N9A NAD 312 A 1 HETATM 14 C C8A NAD . . . E 2 34.433 -81.686 44.214 1 41.37 ? C8A NAD 312 A 1 HETATM 15 N N7A NAD . . . E 2 35.448 -82.475 43.837 1 42.03 ? N7A NAD 312 A 1 HETATM 16 C C5A NAD . . . E 2 35.131 -83.749 44.253 1 40.41 ? C5A NAD 312 A 1 HETATM 17 C C6A NAD . . . E 2 35.799 -84.953 44.134 1 38.67 ? C6A NAD 312 A 1 HETATM 18 N N6A NAD . . . E 2 36.965 -85.004 43.512 1 42.75 ? N6A NAD 312 A 1 HETATM 19 N N1A NAD . . . E 2 35.285 -86.095 44.634 1 38.21 ? N1A NAD 312 A 1 HETATM 20 C C2A NAD . . . E 2 34.078 -86.073 45.305 1 42.22 ? C2A NAD 312 A 1 HETATM 21 N N3A NAD . . . E 2 33.409 -84.862 45.413 1 43.08 ? N3A NAD 312 A 1 HETATM 22 C C4A NAD . . . E 2 33.938 -83.723 44.917 1 39.66 ? C4A NAD 312 A 1 HETATM 23 O O3 NAD . . . E 2 28.58 -77.731 42.173 1 48.24 ? O3 NAD 312 A 1 HETATM 24 P PN NAD . . . E 2 27.163 -78.022 41.384 1 45.16 ? PN NAD 312 A 1 HETATM 25 O O1N NAD . . . E 2 26.684 -76.761 40.691 1 40.97 ? O1N NAD 312 A 1 HETATM 26 O O2N NAD . . . E 2 26.425 -78.828 42.355 1 38.26 ? O2N NAD 312 A 1 HETATM 27 O O5D NAD . . . E 2 27.748 -78.895 40.136 1 52.22 ? O5D NAD 312 A 1 HETATM 28 C C5D NAD . . . E 2 28.079 -80.292 40.123 1 51.46 ? C5D NAD 312 A 1 HETATM 29 C C4D NAD . . . E 2 27.857 -80.83 38.7 1 53.09 ? C4D NAD 312 A 1 HETATM 30 O O4D NAD . . . E 2 26.615 -80.366 38.226 1 52.32 ? O4D NAD 312 A 1 HETATM 31 C C3D NAD . . . E 2 28.889 -80.4 37.648 1 54.41 ? C3D NAD 312 A 1 HETATM 32 O O3D NAD . . . E 2 29.288 -81.53 36.873 1 54.52 ? O3D NAD 312 A 1 HETATM 33 C C2D NAD . . . E 2 28.13 -79.458 36.748 1 53.7 ? C2D NAD 312 A 1 HETATM 34 O O2D NAD . . . E 2 28.609 -79.466 35.413 1 51.48 ? O2D NAD 312 A 1 HETATM 35 C C1D NAD . . . E 2 26.712 -79.983 36.89 1 52.8 ? C1D NAD 312 A 1 HETATM 36 N N1N NAD . . . E 2 25.673 -78.981 36.56 1 57.17 ? N1N NAD 312 A 1 HETATM 37 C C2N NAD . . . E 2 25.554 -77.77 37.268 1 57.66 ? C2N NAD 312 A 1 HETATM 38 C C3N NAD . . . E 2 24.528 -76.836 36.877 1 59.94 ? C3N NAD 312 A 1 HETATM 39 C C7N NAD . . . E 2 24.456 -75.457 37.509 1 58.06 ? C7N NAD 312 A 1 HETATM 40 O O7N NAD . . . E 2 25.016 -75.302 38.793 1 57.82 ? O7N NAD 312 A 1 HETATM 41 N N7N NAD . . . E 2 23.888 -74.473 36.825 1 54.59 ? N7N NAD 312 A 1 HETATM 42 C C4N NAD . . . E 2 23.639 -77.141 35.815 1 54.33 ? C4N NAD 312 A 1 HETATM 43 C C5N NAD . . . E 2 23.788 -78.358 35.139 1 53.33 ? C5N NAD 312 A 1 HETATM 44 C C6N NAD . . . E 2 24.812 -79.252 35.504 1 50.36 ? C6N NAD 312 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #