data_3GGV
#
_model_server_result.job_id            0H4XuiOe0eZ4BW5f76cpkg 
_model_server_result.datetime_utc      '2024-12-25 17:49:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ggv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":100}' 
#
_entry.id    3GGV 
#
_exptl.entry_id    3GGV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              862.067 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl [(1S)-1-{[(1R,3S,4S)-3-hydroxy-4-{[(2S)-2-(3-{[6-(1-hydroxy-1-methylethyl)pyridin-2-yl]methyl}-2-oxo-2,3-dihydro-1H-imidazol-1-yl)-3,3-dimethylbutanoyl]amino}-5-phenyl-1-(4-pyridin-2-ylbenzyl)pentyl]carbamoyl}-2,2-dimethylpropyl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.65 
_cell.angle_gamma         90 
_cell.entry_id            3GGV 
_cell.length_a            83.983 
_cell.length_b            58.053 
_cell.length_c            225.413 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GGV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,J 1 1 
C,D 2 1 
E,F 3 1 
G,H 4 1 
I 5 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -30.00728 0 223.406767 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C49 H63 N7 O7' 
_chem_comp.formula_weight    862.067 
_chem_comp.id                GGV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl [(1S)-1-{[(1R,3S,4S)-3-hydroxy-4-{[(2S)-2-(3-{[6-(1-hydroxy-1-methylethyl)pyridin-2-yl]methyl}-2-oxo-2,3-dihydro-1H-imidazol-1-yl)-3,3-dimethylbutanoyl]amino}-5-phenyl-1-(4-pyridin-2-ylbenzyl)pentyl]carbamoyl}-2,2-dimethylpropyl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O GGV sing 83 n n 
N C3 GGV sing 84 n n 
N C6 GGV sing 85 n n 
O C3 GGV sing 86 n n 
C3 O4 GGV doub 87 n n 
C6 C7 GGV sing 88 n n 
C6 C60 GGV sing 89 n n 
C7 O8 GGV doub 90 n n 
C7 N9 GGV sing 91 n n 
N9 C10 GGV sing 92 n n 
C10 C11 GGV sing 93 n n 
C10 C47 GGV sing 94 n n 
C11 C12 GGV sing 95 n n 
C12 O13 GGV sing 96 n n 
C12 C14 GGV sing 97 n n 
C14 C15 GGV sing 98 n n 
C14 N22 GGV sing 99 n n 
C15 C16 GGV sing 100 n n 
C16 C17 GGV doub 101 n y 
C16 C21 GGV sing 102 n y 
C17 C18 GGV sing 103 n y 
C18 C19 GGV doub 104 n y 
C19 C20 GGV sing 105 n y 
C20 C21 GGV doub 106 n y 
N22 C23 GGV sing 107 n n 
C23 O24 GGV doub 108 n n 
C23 C25 GGV sing 109 n n 
C25 N26 GGV sing 110 n n 
C25 C43 GGV sing 111 n n 
N26 C27 GGV sing 112 n n 
N26 C41 GGV sing 113 n n 
C27 C28 GGV doub 114 n n 
C28 N29 GGV sing 115 n n 
N29 C30 GGV sing 116 n n 
N29 C41 GGV sing 117 n n 
C30 C31 GGV sing 118 n n 
C31 C32 GGV doub 119 n y 
C31 N36 GGV sing 120 n y 
C32 C33 GGV sing 121 n y 
C33 C34 GGV doub 122 n y 
C34 C35 GGV sing 123 n y 
C35 N36 GGV doub 124 n y 
C35 C37 GGV sing 125 n n 
C37 C38 GGV sing 126 n n 
C37 C39 GGV sing 127 n n 
C37 O40 GGV sing 128 n n 
C41 O42 GGV doub 129 n n 
C43 C44 GGV sing 130 n n 
C43 C45 GGV sing 131 n n 
C43 C46 GGV sing 132 n n 
C47 C48 GGV sing 133 n n 
C48 C49 GGV doub 134 n y 
C48 C53 GGV sing 135 n y 
C49 C50 GGV sing 136 n y 
C50 C51 GGV doub 137 n y 
C51 C52 GGV sing 138 n y 
C51 C54 GGV sing 139 n y 
C52 C53 GGV doub 140 n y 
C54 C55 GGV doub 141 n y 
C54 N59 GGV sing 142 n y 
C55 C56 GGV sing 143 n y 
C56 C57 GGV doub 144 n y 
C57 C58 GGV sing 145 n y 
C58 N59 GGV doub 146 n y 
C60 C61 GGV sing 147 n n 
C60 C62 GGV sing 148 n n 
C60 C63 GGV sing 149 n n 
C H GGV sing 150 n n 
C HA GGV sing 151 n n 
C HB GGV sing 152 n n 
N HN GGV sing 153 n n 
C6 H6 GGV sing 154 n n 
N9 HN9 GGV sing 155 n n 
C10 H10 GGV sing 156 n n 
C11 H11 GGV sing 157 n n 
C11 H11A GGV sing 158 n n 
C12 H12 GGV sing 159 n n 
O13 HO13 GGV sing 160 n n 
C14 H14 GGV sing 161 n n 
C15 H15 GGV sing 162 n n 
C15 H15A GGV sing 163 n n 
C17 H17 GGV sing 164 n n 
C18 H18 GGV sing 165 n n 
C19 H19 GGV sing 166 n n 
C20 H20 GGV sing 167 n n 
C21 H21 GGV sing 168 n n 
N22 HN22 GGV sing 169 n n 
C25 H25 GGV sing 170 n n 
C27 H27 GGV sing 171 n n 
C28 H28 GGV sing 172 n n 
C30 H30 GGV sing 173 n n 
C30 H30A GGV sing 174 n n 
C32 H32 GGV sing 175 n n 
C33 H33 GGV sing 176 n n 
C34 H34 GGV sing 177 n n 
C38 H38 GGV sing 178 n n 
C38 H38A GGV sing 179 n n 
C38 H38B GGV sing 180 n n 
C39 H39 GGV sing 181 n n 
C39 H39A GGV sing 182 n n 
C39 H39B GGV sing 183 n n 
O40 HO40 GGV sing 184 n n 
C44 H44 GGV sing 185 n n 
C44 H44A GGV sing 186 n n 
C44 H44B GGV sing 187 n n 
C45 H45 GGV sing 188 n n 
C45 H45A GGV sing 189 n n 
C45 H45B GGV sing 190 n n 
C46 H46 GGV sing 191 n n 
C46 H46A GGV sing 192 n n 
C46 H46B GGV sing 193 n n 
C47 H47 GGV sing 194 n n 
C47 H47A GGV sing 195 n n 
C49 H49 GGV sing 196 n n 
C50 H50 GGV sing 197 n n 
C52 H52 GGV sing 198 n n 
C53 H53 GGV sing 199 n n 
C55 H55 GGV sing 200 n n 
C56 H56 GGV sing 201 n n 
C57 H57 GGV sing 202 n n 
C58 H58 GGV sing 203 n n 
C61 H61 GGV sing 204 n n 
C61 H61A GGV sing 205 n n 
C61 H61B GGV sing 206 n n 
C62 H62 GGV sing 207 n n 
C62 H62A GGV sing 208 n n 
C62 H62B GGV sing 209 n n 
C63 H63 GGV sing 210 n n 
C63 H63A GGV sing 211 n n 
C63 H63B GGV sing 212 n n 
#
_atom_sites.entry_id                     3GGV 
_atom_sites.fract_transf_matrix[1][1]    0.011907 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001599 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017226 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          J 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           GGV 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      100 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       GGV 
_pdbx_nonpoly_scheme.auth_mon_id      GGV 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C GGV . . . J 2 11.584 2.997 3.82 1 21.37 ? C GGV 100 B 1 
HETATM 2 N N GGV . . . J 2 12.046 -0.258 5.085 1 21.54 ? N GGV 100 B 1 
HETATM 3 O O GGV . . . J 2 11.892 1.606 3.83 1 21.52 ? O GGV 100 B 1 
HETATM 4 C C3 GGV . . . J 2 11.929 1.109 5.1 1 21.54 ? C3 GGV 100 B 1 
HETATM 5 O O4 GGV . . . J 2 11.889 1.788 6.123 1 21.96 ? O4 GGV 100 B 1 
HETATM 6 C C6 GGV . . . J 2 12.635 -0.868 6.258 1 21.7 ? C6 GGV 100 B 1 
HETATM 7 C C7 GGV . . . J 2 13.887 -1.547 5.757 1 22 ? C7 GGV 100 B 1 
HETATM 8 O O8 GGV . . . J 2 13.859 -2.516 5.014 1 22.25 ? O8 GGV 100 B 1 
HETATM 9 N N9 GGV . . . J 2 15.023 -0.91 6.245 1 22.14 ? N9 GGV 100 B 1 
HETATM 10 C C10 GGV . . . J 2 16.371 -1.13 5.774 1 22.46 ? C10 GGV 100 B 1 
HETATM 11 C C11 GGV . . . J 2 16.931 -2.473 6.21 1 23.05 ? C11 GGV 100 B 1 
HETATM 12 C C12 GGV . . . J 2 16.586 -2.944 7.618 1 23.53 ? C12 GGV 100 B 1 
HETATM 13 O O13 GGV . . . J 2 17.359 -2.201 8.565 1 23.02 ? O13 GGV 100 B 1 
HETATM 14 C C14 GGV . . . J 2 16.812 -4.465 7.749 1 23.3 ? C14 GGV 100 B 1 
HETATM 15 C C15 GGV . . . J 2 16.14 -5.01 8.984 1 23.06 ? C15 GGV 100 B 1 
HETATM 16 C C16 GGV . . . J 2 16.378 -6.466 9.223 1 23.14 ? C16 GGV 100 B 1 
HETATM 17 C C17 GGV . . . J 2 15.678 -7.429 8.532 1 23.09 ? C17 GGV 100 B 1 
HETATM 18 C C18 GGV . . . J 2 15.914 -8.766 8.78 1 23.52 ? C18 GGV 100 B 1 
HETATM 19 C C19 GGV . . . J 2 16.842 -9.168 9.716 1 22.82 ? C19 GGV 100 B 1 
HETATM 20 C C20 GGV . . . J 2 17.533 -8.205 10.411 1 22.63 ? C20 GGV 100 B 1 
HETATM 21 C C21 GGV . . . J 2 17.301 -6.867 10.166 1 23.41 ? C21 GGV 100 B 1 
HETATM 22 N N22 GGV . . . J 2 18.194 -4.906 7.725 1 23.58 ? N22 GGV 100 B 1 
HETATM 23 C C23 GGV . . . J 2 18.642 -5.74 6.717 1 23.42 ? C23 GGV 100 B 1 
HETATM 24 O O24 GGV . . . J 2 17.944 -6.223 5.833 1 24.25 ? O24 GGV 100 B 1 
HETATM 25 C C25 GGV . . . J 2 20.125 -6.003 6.811 1 22.95 ? C25 GGV 100 B 1 
HETATM 26 N N26 GGV . . . J 2 20.208 -7.354 7.36 1 23.31 ? N26 GGV 100 B 1 
HETATM 27 C C27 GGV . . . J 2 19.546 -8.463 6.892 1 23.72 ? C27 GGV 100 B 1 
HETATM 28 C C28 GGV . . . J 2 19.851 -9.498 7.676 1 23.43 ? C28 GGV 100 B 1 
HETATM 29 N N29 GGV . . . J 2 20.695 -9.035 8.636 1 23.51 ? N29 GGV 100 B 1 
HETATM 30 C C30 GGV . . . J 2 21.248 -9.87 9.679 1 26.07 ? C30 GGV 100 B 1 
HETATM 31 C C31 GGV . . . J 2 20.253 -10.453 10.647 1 28.14 ? C31 GGV 100 B 1 
HETATM 32 C C32 GGV . . . J 2 19.982 -9.829 11.851 1 28.89 ? C32 GGV 100 B 1 
HETATM 33 C C33 GGV . . . J 2 19.068 -10.388 12.724 1 28.23 ? C33 GGV 100 B 1 
HETATM 34 C C34 GGV . . . J 2 18.453 -11.562 12.361 1 27.74 ? C34 GGV 100 B 1 
HETATM 35 C C35 GGV . . . J 2 18.774 -12.128 11.143 1 28.7 ? C35 GGV 100 B 1 
HETATM 36 N N36 GGV . . . J 2 19.658 -11.597 10.289 1 28.64 ? N36 GGV 100 B 1 
HETATM 37 C C37 GGV . . . J 2 18.142 -13.405 10.686 1 28.68 ? C37 GGV 100 B 1 
HETATM 38 C C38 GGV . . . J 2 17.53 -13.175 9.323 1 28.85 ? C38 GGV 100 B 1 
HETATM 39 C C39 GGV . . . J 2 17.123 -13.952 11.667 1 29.66 ? C39 GGV 100 B 1 
HETATM 40 O O40 GGV . . . J 2 19.146 -14.397 10.549 1 29.52 ? O40 GGV 100 B 1 
HETATM 41 C C41 GGV . . . J 2 20.945 -7.686 8.473 1 23.16 ? C41 GGV 100 B 1 
HETATM 42 O O42 GGV . . . J 2 21.647 -6.947 9.148 1 22.23 ? O42 GGV 100 B 1 
HETATM 43 C C43 GGV . . . J 2 20.81 -5.7 5.475 1 21.45 ? C43 GGV 100 B 1 
HETATM 44 C C44 GGV . . . J 2 20.294 -4.375 4.947 1 19.46 ? C44 GGV 100 B 1 
HETATM 45 C C45 GGV . . . J 2 22.3 -5.612 5.683 1 20.63 ? C45 GGV 100 B 1 
HETATM 46 C C46 GGV . . . J 2 20.616 -6.755 4.412 1 22.01 ? C46 GGV 100 B 1 
HETATM 47 C C47 GGV . . . J 2 16.524 -1.074 4.258 1 24.1 ? C47 GGV 100 B 1 
HETATM 48 C C48 GGV . . . J 2 15.837 0.034 3.518 1 24.61 ? C48 GGV 100 B 1 
HETATM 49 C C49 GGV . . . J 2 15.26 -0.224 2.291 1 25 ? C49 GGV 100 B 1 
HETATM 50 C C50 GGV . . . J 2 14.628 0.765 1.568 1 25.31 ? C50 GGV 100 B 1 
HETATM 51 C C51 GGV . . . J 2 14.547 2.055 2.057 1 26.65 ? C51 GGV 100 B 1 
HETATM 52 C C52 GGV . . . J 2 15.124 2.295 3.289 1 25.6 ? C52 GGV 100 B 1 
HETATM 53 C C53 GGV . . . J 2 15.764 1.313 4.014 1 24.4 ? C53 GGV 100 B 1 
HETATM 54 C C54 GGV . . . J 2 13.918 3.15 1.305 1 29.31 ? C54 GGV 100 B 1 
HETATM 55 C C55 GGV . . . J 2 13.994 4.452 1.772 1 28.98 ? C55 GGV 100 B 1 
HETATM 56 C C56 GGV . . . J 2 13.418 5.456 1.025 1 29.66 ? C56 GGV 100 B 1 
HETATM 57 C C57 GGV . . . J 2 12.779 5.141 -0.158 1 29.64 ? C57 GGV 100 B 1 
HETATM 58 C C58 GGV . . . J 2 12.741 3.825 -0.556 1 28.66 ? C58 GGV 100 B 1 
HETATM 59 N N59 GGV . . . J 2 13.3 2.832 0.145 1 29.9 ? N59 GGV 100 B 1 
HETATM 60 C C60 GGV . . . J 2 11.656 -1.745 7.035 1 21.23 ? C60 GGV 100 B 1 
HETATM 61 C C61 GGV . . . J 2 10.845 -2.657 6.159 1 21.52 ? C61 GGV 100 B 1 
HETATM 62 C C62 GGV . . . J 2 12.383 -2.61 8.036 1 20.69 ? C62 GGV 100 B 1 
HETATM 63 C C63 GGV . . . J 2 10.682 -0.852 7.762 1 20.76 ? C63 GGV 100 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           63 
#