data_3GH9 # _model_server_result.job_id y9Rr5_XzYvLTSAfgQra-3g _model_server_result.datetime_utc '2024-10-19 11:46:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3GH9 # _exptl.entry_id 3GH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.38 _cell.angle_gamma 90 _cell.entry_id 3GH9 _cell.length_a 38.55 _cell.length_b 43.57 _cell.length_c 54.56 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 41 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 72 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.143 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3GH9 _atom_sites.fract_transf_matrix[1][1] 0.02594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 301 EDO EDO . C 3 UNX A 1 1 1 UNX UNX . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 231 1 HOH HOH . D 4 HOH A 29 232 29 HOH HOH . D 4 HOH A 30 233 30 HOH HOH . D 4 HOH A 31 234 31 HOH HOH . D 4 HOH A 32 235 32 HOH HOH . D 4 HOH A 33 236 33 HOH HOH . D 4 HOH A 34 237 34 HOH HOH . D 4 HOH A 35 238 35 HOH HOH . D 4 HOH A 36 239 36 HOH HOH . D 4 HOH A 37 240 37 HOH HOH . D 4 HOH A 38 241 38 HOH HOH . D 4 HOH A 39 242 39 HOH HOH . D 4 HOH A 40 243 40 HOH HOH . D 4 HOH A 41 244 41 HOH HOH . D 4 HOH A 42 245 42 HOH HOH . D 4 HOH A 43 246 43 HOH HOH . D 4 HOH A 44 247 44 HOH HOH . D 4 HOH A 45 248 45 HOH HOH . D 4 HOH A 46 249 46 HOH HOH . D 4 HOH A 47 250 47 HOH HOH . D 4 HOH A 48 251 48 HOH HOH . D 4 HOH A 49 252 49 HOH HOH . D 4 HOH A 50 253 50 HOH HOH . D 4 HOH A 51 254 51 HOH HOH . D 4 HOH A 52 255 52 HOH HOH . D 4 HOH A 53 256 53 HOH HOH . D 4 HOH A 54 257 54 HOH HOH . D 4 HOH A 55 258 55 HOH HOH . D 4 HOH A 56 259 56 HOH HOH . D 4 HOH A 57 260 57 HOH HOH . D 4 HOH A 58 261 58 HOH HOH . D 4 HOH A 59 262 59 HOH HOH . D 4 HOH A 60 263 60 HOH HOH . D 4 HOH A 61 264 61 HOH HOH . D 4 HOH A 62 265 62 HOH HOH . D 4 HOH A 63 266 63 HOH HOH . D 4 HOH A 64 267 64 HOH HOH . D 4 HOH A 65 268 65 HOH HOH . D 4 HOH A 66 269 66 HOH HOH . D 4 HOH A 67 270 67 HOH HOH . D 4 HOH A 68 271 68 HOH HOH . D 4 HOH A 69 272 69 HOH HOH . D 4 HOH A 70 273 70 HOH HOH . D 4 HOH A 71 274 71 HOH HOH . D 4 HOH A 72 275 72 HOH HOH . D 4 HOH A 73 276 73 HOH HOH . D 4 HOH A 74 277 74 HOH HOH . D 4 HOH A 75 278 75 HOH HOH . D 4 HOH A 76 279 76 HOH HOH . D 4 HOH A 77 280 77 HOH HOH . D 4 HOH A 78 281 78 HOH HOH . D 4 HOH A 79 282 79 HOH HOH . D 4 HOH A 80 283 80 HOH HOH . D 4 HOH A 81 284 81 HOH HOH . D 4 HOH A 82 285 82 HOH HOH . D 4 HOH A 83 286 83 HOH HOH . D 4 HOH A 84 287 84 HOH HOH . D 4 HOH A 85 288 85 HOH HOH . D 4 HOH A 86 289 86 HOH HOH . D 4 HOH A 87 290 87 HOH HOH . D 4 HOH A 88 291 88 HOH HOH . D 4 HOH A 89 292 89 HOH HOH . D 4 HOH A 90 293 90 HOH HOH . D 4 HOH A 91 294 91 HOH HOH . D 4 HOH A 92 295 92 HOH HOH . D 4 HOH A 93 296 93 HOH HOH . D 4 HOH A 94 297 94 HOH HOH . D 4 HOH A 95 298 95 HOH HOH . D 4 HOH A 96 299 96 HOH HOH . D 4 HOH A 97 300 97 HOH HOH . D 4 HOH A 98 302 98 HOH HOH . D 4 HOH A 99 303 99 HOH HOH . D 4 HOH A 100 304 100 HOH HOH . D 4 HOH A 101 305 101 HOH HOH . D 4 HOH A 102 306 102 HOH HOH . D 4 HOH A 103 307 103 HOH HOH . D 4 HOH A 104 308 104 HOH HOH . D 4 HOH A 105 309 105 HOH HOH . D 4 HOH A 106 310 106 HOH HOH . D 4 HOH A 107 311 107 HOH HOH . D 4 HOH A 108 312 108 HOH HOH . D 4 HOH A 109 313 109 HOH HOH . D 4 HOH A 110 314 110 HOH HOH . D 4 HOH A 111 315 111 HOH HOH . D 4 HOH A 112 316 112 HOH HOH . D 4 HOH A 113 317 113 HOH HOH . D 4 HOH A 114 318 114 HOH HOH . D 4 HOH A 115 319 115 HOH HOH . D 4 HOH A 116 320 116 HOH HOH . D 4 HOH A 117 321 117 HOH HOH . D 4 HOH A 118 322 118 HOH HOH . D 4 HOH A 119 323 119 HOH HOH . D 4 HOH A 120 324 120 HOH HOH . D 4 HOH A 121 325 121 HOH HOH . D 4 HOH A 122 326 122 HOH HOH . D 4 HOH A 123 327 123 HOH HOH . D 4 HOH A 124 328 124 HOH HOH . D 4 HOH A 125 329 125 HOH HOH . D 4 HOH A 126 330 126 HOH HOH . D 4 HOH A 127 331 127 HOH HOH . D 4 HOH A 128 332 128 HOH HOH . D 4 HOH A 129 333 129 HOH HOH . D 4 HOH A 130 334 130 HOH HOH . D 4 HOH A 131 335 131 HOH HOH . D 4 HOH A 132 336 132 HOH HOH . D 4 HOH A 133 337 133 HOH HOH . D 4 HOH A 134 338 134 HOH HOH . D 4 HOH A 135 339 135 HOH HOH . D 4 HOH A 136 340 136 HOH HOH . D 4 HOH A 137 341 137 HOH HOH . D 4 HOH A 138 342 138 HOH HOH . D 4 HOH A 139 343 139 HOH HOH . D 4 HOH A 140 344 140 HOH HOH . D 4 HOH A 141 345 141 HOH HOH . D 4 HOH A 142 346 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -0.667 28.119 39.872 1 23.87 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . B 2 -1.115 26.815 39.509 1 21.97 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . B 2 0.464 28.49 38.928 1 23.44 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . B 2 1.302 27.344 38.789 1 25.46 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #