data_3GI3 # _model_server_result.job_id O7HGrC416xw3ILZrI0pnfQ _model_server_result.datetime_utc '2024-10-20 20:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":391}' # _entry.id 3GI3 # _exptl.entry_id 3GI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 617.758 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{5-tert-butyl-2-methoxy-3-[({4-[6-(morpholin-4-ylmethyl)pyridin-3-yl]naphthalen-1-yl}carbamoyl)amino]phenyl}methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GI3 _cell.length_a 65.01 _cell.length_b 74.14 _cell.length_c 74.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H39 N5 O5 S' _chem_comp.formula_weight 617.758 _chem_comp.id B10 _chem_comp.mon_nstd_flag . _chem_comp.name N-{5-tert-butyl-2-methoxy-3-[({4-[6-(morpholin-4-ylmethyl)pyridin-3-yl]naphthalen-1-yl}carbamoyl)amino]phenyl}methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 B10 sing 70 n n N1 C24 B10 sing 71 n n C2 C10 B10 doub 72 n y C2 C55 B10 sing 73 n y C10 C12 B10 sing 74 n y C12 C19 B10 doub 75 n y C12 C14 B10 sing 76 n n C55 C18 B10 doub 77 n y C55 O3 B10 sing 78 n n C18 C19 B10 sing 79 n y C18 N2 B10 sing 80 n n O3 C13 B10 sing 81 n n C14 C15 B10 sing 82 n n C14 C16 B10 sing 83 n n C14 C17 B10 sing 84 n n C24 O1 B10 doub 85 n n C24 N4 B10 sing 86 n n N4 C25 B10 sing 87 n n C25 C4 B10 doub 88 n y C25 C8 B10 sing 89 n y C4 C5 B10 sing 90 n y C4 C26 B10 sing 91 n y C5 C6 B10 doub 92 n y C5 C29 B10 sing 93 n y C6 C30 B10 sing 94 n y C6 C11 B10 sing 95 n y C26 C27 B10 doub 96 n y C27 C28 B10 sing 97 n y C28 C29 B10 doub 98 n y C30 C8 B10 doub 99 n y C11 C1 B10 doub 100 n y C11 C9 B10 sing 101 n y C1 C33 B10 sing 102 n y C33 C7 B10 doub 103 n y C7 N3 B10 sing 104 n y C7 C3 B10 sing 105 n n N3 C9 B10 doub 106 n y N2 S1 B10 sing 107 n n S1 O6 B10 doub 108 n n S1 O7 B10 doub 109 n n S1 C23 B10 sing 110 n n C3 N5 B10 sing 111 n n N5 C31 B10 sing 112 n n N5 C20 B10 sing 113 n n C31 C21 B10 sing 114 n n C20 C32 B10 sing 115 n n C21 O2 B10 sing 116 n n C32 O2 B10 sing 117 n n N1 HN1 B10 sing 118 n n C10 H10 B10 sing 119 n n C19 H19 B10 sing 120 n n C13 H13 B10 sing 121 n n C13 H13A B10 sing 122 n n C13 H13B B10 sing 123 n n C15 H15 B10 sing 124 n n C15 H15A B10 sing 125 n n C15 H15B B10 sing 126 n n C16 H16 B10 sing 127 n n C16 H16A B10 sing 128 n n C16 H16B B10 sing 129 n n C17 H17 B10 sing 130 n n C17 H17A B10 sing 131 n n C17 H17B B10 sing 132 n n N4 HN4 B10 sing 133 n n C26 H26 B10 sing 134 n n C27 H27 B10 sing 135 n n C28 H28 B10 sing 136 n n C29 H29 B10 sing 137 n n C30 H30 B10 sing 138 n n C8 H8 B10 sing 139 n n C1 H1 B10 sing 140 n n C33 H33 B10 sing 141 n n C9 H9 B10 sing 142 n n N2 HN2 B10 sing 143 n n C23 H23 B10 sing 144 n n C23 H23A B10 sing 145 n n C23 H23B B10 sing 146 n n C3 H3 B10 sing 147 n n C3 H3A B10 sing 148 n n C31 H31 B10 sing 149 n n C31 H31A B10 sing 150 n n C20 H20 B10 sing 151 n n C20 H20A B10 sing 152 n n C21 H21 B10 sing 153 n n C21 H21A B10 sing 154 n n C32 H32 B10 sing 155 n n C32 H32A B10 sing 156 n n # _atom_sites.entry_id 3GI3 _atom_sites.fract_transf_matrix[1][1] 0.015382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B10 A 1 391 391 B10 B10 . C 3 HOH A 1 361 1 HOH TIP . C 3 HOH A 2 362 2 HOH TIP . C 3 HOH A 3 363 3 HOH TIP . C 3 HOH A 4 364 4 HOH TIP . C 3 HOH A 5 365 5 HOH TIP . C 3 HOH A 6 366 6 HOH TIP . C 3 HOH A 7 367 7 HOH TIP . C 3 HOH A 8 368 8 HOH TIP . C 3 HOH A 9 369 9 HOH TIP . C 3 HOH A 10 370 10 HOH TIP . C 3 HOH A 11 371 11 HOH TIP . C 3 HOH A 12 372 12 HOH TIP . C 3 HOH A 13 373 13 HOH TIP . C 3 HOH A 14 374 14 HOH TIP . C 3 HOH A 15 375 15 HOH TIP . C 3 HOH A 16 376 16 HOH TIP . C 3 HOH A 17 377 17 HOH TIP . C 3 HOH A 18 378 18 HOH TIP . C 3 HOH A 19 379 19 HOH TIP . C 3 HOH A 20 380 20 HOH TIP . C 3 HOH A 21 381 21 HOH TIP . C 3 HOH A 22 382 22 HOH TIP . C 3 HOH A 23 383 23 HOH TIP . C 3 HOH A 24 384 24 HOH TIP . C 3 HOH A 25 385 25 HOH TIP . C 3 HOH A 26 386 26 HOH TIP . C 3 HOH A 27 387 27 HOH TIP . C 3 HOH A 28 388 28 HOH TIP . C 3 HOH A 29 389 29 HOH TIP . C 3 HOH A 30 390 30 HOH TIP . C 3 HOH A 31 392 31 HOH TIP . C 3 HOH A 32 393 32 HOH TIP . C 3 HOH A 33 394 33 HOH TIP . C 3 HOH A 34 395 34 HOH TIP . C 3 HOH A 35 396 35 HOH TIP . C 3 HOH A 36 397 36 HOH TIP . C 3 HOH A 37 398 37 HOH TIP . C 3 HOH A 38 399 38 HOH TIP . C 3 HOH A 39 400 39 HOH TIP . C 3 HOH A 40 401 40 HOH TIP . C 3 HOH A 41 402 41 HOH TIP . C 3 HOH A 42 403 42 HOH TIP . C 3 HOH A 43 404 43 HOH TIP . C 3 HOH A 44 405 44 HOH TIP . C 3 HOH A 45 406 45 HOH TIP . C 3 HOH A 46 407 46 HOH TIP . C 3 HOH A 47 408 47 HOH TIP . C 3 HOH A 48 409 48 HOH TIP . C 3 HOH A 49 410 49 HOH TIP . C 3 HOH A 50 411 50 HOH TIP . C 3 HOH A 51 412 51 HOH TIP . C 3 HOH A 52 413 52 HOH TIP . C 3 HOH A 53 414 53 HOH TIP . C 3 HOH A 54 415 54 HOH TIP . C 3 HOH A 55 416 55 HOH TIP . C 3 HOH A 56 417 56 HOH TIP . C 3 HOH A 57 418 57 HOH TIP . C 3 HOH A 58 419 58 HOH TIP . C 3 HOH A 59 420 59 HOH TIP . C 3 HOH A 60 421 60 HOH TIP . C 3 HOH A 61 422 61 HOH TIP . C 3 HOH A 62 423 62 HOH TIP . C 3 HOH A 63 424 63 HOH TIP . C 3 HOH A 64 425 64 HOH TIP . C 3 HOH A 65 426 65 HOH TIP . C 3 HOH A 66 427 66 HOH TIP . C 3 HOH A 67 428 67 HOH TIP . C 3 HOH A 68 429 68 HOH TIP . C 3 HOH A 69 430 69 HOH TIP . C 3 HOH A 70 431 70 HOH TIP . C 3 HOH A 71 432 71 HOH TIP . C 3 HOH A 72 433 72 HOH TIP . C 3 HOH A 73 434 73 HOH TIP . C 3 HOH A 74 435 74 HOH TIP . C 3 HOH A 75 436 75 HOH TIP . C 3 HOH A 76 437 76 HOH TIP . C 3 HOH A 77 438 77 HOH TIP . C 3 HOH A 78 439 78 HOH TIP . C 3 HOH A 79 440 79 HOH TIP . C 3 HOH A 80 441 80 HOH TIP . C 3 HOH A 81 442 81 HOH TIP . C 3 HOH A 82 443 82 HOH TIP . C 3 HOH A 83 444 83 HOH TIP . C 3 HOH A 84 445 84 HOH TIP . C 3 HOH A 85 446 85 HOH TIP . C 3 HOH A 86 447 86 HOH TIP . C 3 HOH A 87 448 87 HOH TIP . C 3 HOH A 88 449 88 HOH TIP . C 3 HOH A 89 450 89 HOH TIP . C 3 HOH A 90 451 90 HOH TIP . C 3 HOH A 91 452 91 HOH TIP . C 3 HOH A 92 453 92 HOH TIP . C 3 HOH A 93 454 93 HOH TIP . C 3 HOH A 94 455 94 HOH TIP . C 3 HOH A 95 456 95 HOH TIP . C 3 HOH A 96 457 96 HOH TIP . C 3 HOH A 97 458 97 HOH TIP . C 3 HOH A 98 459 98 HOH TIP . C 3 HOH A 99 460 99 HOH TIP . C 3 HOH A 100 461 100 HOH TIP . C 3 HOH A 101 462 101 HOH TIP . C 3 HOH A 102 463 102 HOH TIP . C 3 HOH A 103 464 103 HOH TIP . C 3 HOH A 104 465 104 HOH TIP . C 3 HOH A 105 466 105 HOH TIP . C 3 HOH A 106 467 106 HOH TIP . C 3 HOH A 107 468 107 HOH TIP . C 3 HOH A 108 469 108 HOH TIP . C 3 HOH A 109 470 109 HOH TIP . C 3 HOH A 110 471 110 HOH TIP . C 3 HOH A 111 472 111 HOH TIP . C 3 HOH A 112 473 112 HOH TIP . C 3 HOH A 113 474 113 HOH TIP . C 3 HOH A 114 475 114 HOH TIP . C 3 HOH A 115 476 115 HOH TIP . C 3 HOH A 116 477 116 HOH TIP . C 3 HOH A 117 478 117 HOH TIP . C 3 HOH A 118 479 118 HOH TIP . C 3 HOH A 119 480 119 HOH TIP . C 3 HOH A 120 481 120 HOH TIP . C 3 HOH A 121 482 121 HOH TIP . C 3 HOH A 122 483 122 HOH TIP . C 3 HOH A 123 484 123 HOH TIP . C 3 HOH A 124 485 124 HOH TIP . C 3 HOH A 125 486 125 HOH TIP . C 3 HOH A 126 487 126 HOH TIP . C 3 HOH A 127 488 127 HOH TIP . C 3 HOH A 128 489 128 HOH TIP . C 3 HOH A 129 490 129 HOH TIP . C 3 HOH A 130 491 130 HOH TIP . C 3 HOH A 131 492 131 HOH TIP . C 3 HOH A 132 493 132 HOH TIP . C 3 HOH A 133 494 133 HOH TIP . C 3 HOH A 134 495 134 HOH TIP . C 3 HOH A 135 496 135 HOH TIP . C 3 HOH A 136 497 136 HOH TIP . C 3 HOH A 137 498 137 HOH TIP . C 3 HOH A 138 499 138 HOH TIP . C 3 HOH A 139 500 139 HOH TIP . C 3 HOH A 140 501 140 HOH TIP . C 3 HOH A 141 502 141 HOH TIP . C 3 HOH A 142 503 142 HOH TIP . C 3 HOH A 143 504 143 HOH TIP . C 3 HOH A 144 505 144 HOH TIP . C 3 HOH A 145 506 145 HOH TIP . C 3 HOH A 146 507 146 HOH TIP . C 3 HOH A 147 508 147 HOH TIP . C 3 HOH A 148 509 148 HOH TIP . C 3 HOH A 149 510 149 HOH TIP . C 3 HOH A 150 511 150 HOH TIP . C 3 HOH A 151 512 151 HOH TIP . C 3 HOH A 152 513 152 HOH TIP . C 3 HOH A 153 514 153 HOH TIP . C 3 HOH A 154 515 154 HOH TIP . C 3 HOH A 155 516 155 HOH TIP . C 3 HOH A 156 517 156 HOH TIP . C 3 HOH A 157 518 157 HOH TIP . C 3 HOH A 158 519 158 HOH TIP . C 3 HOH A 159 520 159 HOH TIP . C 3 HOH A 160 521 160 HOH TIP . C 3 HOH A 161 522 161 HOH TIP . C 3 HOH A 162 523 162 HOH TIP . C 3 HOH A 163 524 163 HOH TIP . C 3 HOH A 164 525 164 HOH TIP . C 3 HOH A 165 526 165 HOH TIP . C 3 HOH A 166 527 166 HOH TIP . C 3 HOH A 167 528 167 HOH TIP . C 3 HOH A 168 529 168 HOH TIP . C 3 HOH A 169 530 169 HOH TIP . C 3 HOH A 170 531 170 HOH TIP . C 3 HOH A 171 532 171 HOH TIP . C 3 HOH A 172 533 172 HOH TIP . C 3 HOH A 173 534 173 HOH TIP . C 3 HOH A 174 535 174 HOH TIP . C 3 HOH A 175 536 175 HOH TIP . C 3 HOH A 176 537 176 HOH TIP . C 3 HOH A 177 538 177 HOH TIP . C 3 HOH A 178 539 178 HOH TIP . C 3 HOH A 179 540 179 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 B10 . . . B 2 33.391 36.255 12.407 1 24.11 ? N1 B10 391 A 1 HETATM 2 C C2 B10 . . . B 2 32.204 35.877 11.795 1 20.4 ? C2 B10 391 A 1 HETATM 3 C C10 B10 . . . B 2 31.183 36.795 11.348 1 18.48 ? C10 B10 391 A 1 HETATM 4 C C12 B10 . . . B 2 29.961 36.297 10.727 1 16.75 ? C12 B10 391 A 1 HETATM 5 C C55 B10 . . . B 2 32.005 34.475 11.618 1 20.98 ? C55 B10 391 A 1 HETATM 6 C C18 B10 . . . B 2 30.815 33.975 11.012 1 20.83 ? C18 B10 391 A 1 HETATM 7 C C19 B10 . . . B 2 29.809 34.878 10.574 1 19.01 ? C19 B10 391 A 1 HETATM 8 O O3 B10 . . . B 2 33.008 33.586 12.054 1 21.35 ? O3 B10 391 A 1 HETATM 9 C C13 B10 . . . B 2 32.755 33.002 13.347 1 20.15 ? C13 B10 391 A 1 HETATM 10 C C14 B10 . . . B 2 28.849 37.276 10.247 1 14.95 ? C14 B10 391 A 1 HETATM 11 C C15 B10 . . . B 2 28.308 38.024 11.481 1 13.2 ? C15 B10 391 A 1 HETATM 12 C C16 B10 . . . B 2 27.633 36.565 9.572 1 15.11 ? C16 B10 391 A 1 HETATM 13 C C17 B10 . . . B 2 29.415 38.277 9.207 1 11.7 ? C17 B10 391 A 1 HETATM 14 C C24 B10 . . . B 2 33.391 37.003 13.545 1 24.16 ? C24 B10 391 A 1 HETATM 15 O O1 B10 . . . B 2 32.328 37.39 14.042 1 24.35 ? O1 B10 391 A 1 HETATM 16 N N4 B10 . . . B 2 34.625 37.267 14.106 1 22.62 ? N4 B10 391 A 1 HETATM 17 C C25 B10 . . . B 2 34.85 38.142 15.177 1 23.8 ? C25 B10 391 A 1 HETATM 18 C C4 B10 . . . B 2 35.996 39.046 15.212 1 21.84 ? C4 B10 391 A 1 HETATM 19 C C5 B10 . . . B 2 36.194 39.972 16.387 1 23.73 ? C5 B10 391 A 1 HETATM 20 C C6 B10 . . . B 2 35.197 39.93 17.47 1 24.49 ? C6 B10 391 A 1 HETATM 21 C C26 B10 . . . B 2 36.951 39.075 14.137 1 21.03 ? C26 B10 391 A 1 HETATM 22 C C27 B10 . . . B 2 38.075 39.962 14.175 1 21.22 ? C27 B10 391 A 1 HETATM 23 C C28 B10 . . . B 2 38.27 40.844 15.293 1 23.16 ? C28 B10 391 A 1 HETATM 24 C C29 B10 . . . B 2 37.343 40.857 16.39 1 23.36 ? C29 B10 391 A 1 HETATM 25 C C30 B10 . . . B 2 34.103 39.028 17.39 1 24.61 ? C30 B10 391 A 1 HETATM 26 C C8 B10 . . . B 2 33.937 38.168 16.295 1 22.31 ? C8 B10 391 A 1 HETATM 27 C C11 B10 . . . B 2 35.199 40.792 18.712 1 28.12 ? C11 B10 391 A 1 HETATM 28 C C1 B10 . . . B 2 35.435 40.247 20.018 1 29.26 ? C1 B10 391 A 1 HETATM 29 C C33 B10 . . . B 2 35.405 41.089 21.172 1 30.72 ? C33 B10 391 A 1 HETATM 30 C C7 B10 . . . B 2 35.131 42.474 20.957 1 32.58 ? C7 B10 391 A 1 HETATM 31 N N3 B10 . . . B 2 34.91 42.957 19.696 1 30.19 ? N3 B10 391 A 1 HETATM 32 C C9 B10 . . . B 2 34.929 42.194 18.588 1 27.9 ? C9 B10 391 A 1 HETATM 33 N N2 B10 . . . B 2 30.623 32.642 10.847 1 24.24 ? N2 B10 391 A 1 HETATM 34 S S1 B10 . . . B 2 31.429 31.779 9.711 1 26.45 ? S1 B10 391 A 1 HETATM 35 O O6 B10 . . . B 2 30.408 31.099 8.985 1 26.26 ? O6 B10 391 A 1 HETATM 36 O O7 B10 . . . B 2 32.353 30.979 10.478 1 28.66 ? O7 B10 391 A 1 HETATM 37 C C23 B10 . . . B 2 32.379 32.755 8.565 1 24.57 ? C23 B10 391 A 1 HETATM 38 C C3 B10 . . . B 2 35.067 43.435 22.126 1 34.81 ? C3 B10 391 A 1 HETATM 39 N N5 B10 . . . B 2 33.851 43.233 22.933 1 37.03 ? N5 B10 391 A 1 HETATM 40 C C31 B10 . . . B 2 32.768 44.072 22.331 1 39.34 ? C31 B10 391 A 1 HETATM 41 C C20 B10 . . . B 2 34.148 43.634 24.342 1 39.12 ? C20 B10 391 A 1 HETATM 42 C C21 B10 . . . B 2 31.516 44.1 23.242 1 40.89 ? C21 B10 391 A 1 HETATM 43 C C32 B10 . . . B 2 32.855 43.662 25.188 1 40.63 ? C32 B10 391 A 1 HETATM 44 O O2 B10 . . . B 2 31.883 44.53 24.567 1 42.77 ? O2 B10 391 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #