data_3GI4 # _model_server_result.job_id L0HRZe0fPA9R1pH18tosGw _model_server_result.datetime_utc '2025-08-31 14:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3GI4 # _exptl.entry_id 3GI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.688 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-2-oxo-3-[3-(tr ifluoromethyl)phenyl]-5-oxazolidinecarboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GI4 _cell.length_a 50.809 _cell.length_b 58.131 _cell.length_c 61.568 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H34 F3 N3 O8 S' _chem_comp.formula_weight 677.688 _chem_comp.id K60 _chem_comp.mon_nstd_flag . _chem_comp.name '5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-2-oxo-3-[3-(tr ifluoromethyl)phenyl]-5-oxazolidinecarboxamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(5S)-N-{(1S,2R)-3-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-1-benzyl-2-hydroxypropyl}-2-oxo-3-[3-(trifluoro methyl)phenyl]-1,3-oxazolidine-5-carboxamide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 S8 K60 doub 179 n n S8 O9 K60 doub 180 n n S8 C5 K60 sing 181 n n S8 N11 K60 sing 182 n n C5 C4 K60 doub 183 n y C5 C6 K60 sing 184 n y C4 C3 K60 sing 185 n y C3 C2 K60 doub 186 n y C3 O29 K60 sing 187 n n C2 O19 K60 sing 188 n n C2 C7 K60 sing 189 n y O19 C18 K60 sing 190 n n C18 O29 K60 sing 191 n n C7 C6 K60 doub 192 n y N11 C12 K60 sing 193 n n N11 C16 K60 sing 194 n n C12 C13 K60 sing 195 n n C13 C14 K60 sing 196 n n C13 C15 K60 sing 197 n n C16 C17 K60 sing 198 n n C17 O18 K60 sing 199 n n C17 C19 K60 sing 200 n n C19 C32 K60 sing 201 n n C19 N20 K60 sing 202 n n C32 C38 K60 sing 203 n n C38 C33 K60 doub 204 n y C38 C37 K60 sing 205 n y C33 C34 K60 sing 206 n y C34 C35 K60 doub 207 n y C35 C36 K60 sing 208 n y C36 C37 K60 doub 209 n y N20 C21 K60 sing 210 n n C21 O22 K60 doub 211 n n C21 C29 K60 sing 212 n n C29 O28 K60 sing 213 n n C29 C25 K60 sing 214 n n O28 C26 K60 sing 215 n n C26 O27 K60 doub 216 n n C26 N24 K60 sing 217 n n C25 N24 K60 sing 218 n n N24 C43 K60 sing 219 n n C43 C44 K60 doub 220 n y C43 C42 K60 sing 221 n y C44 C45 K60 sing 222 n y C45 C40 K60 doub 223 n y C40 C41 K60 sing 224 n y C42 C41 K60 doub 225 n y C41 C46 K60 sing 226 n n C46 F1 K60 sing 227 n n C46 F2 K60 sing 228 n n C46 F3 K60 sing 229 n n C4 H4 K60 sing 230 n n C18 H18 K60 sing 231 n n C18 H18A K60 sing 232 n n C7 H7 K60 sing 233 n n C6 H6 K60 sing 234 n n C12 H12 K60 sing 235 n n C12 H12A K60 sing 236 n n C13 H13 K60 sing 237 n n C14 H14 K60 sing 238 n n C14 H14A K60 sing 239 n n C14 H14B K60 sing 240 n n C15 H15 K60 sing 241 n n C15 H15A K60 sing 242 n n C15 H15B K60 sing 243 n n C16 H16 K60 sing 244 n n C16 H16A K60 sing 245 n n C17 H17 K60 sing 246 n n O18 HO18 K60 sing 247 n n C19 H19 K60 sing 248 n n C32 H32 K60 sing 249 n n C32 H32A K60 sing 250 n n C33 H33 K60 sing 251 n n C34 H34 K60 sing 252 n n C35 H35 K60 sing 253 n n C36 H36 K60 sing 254 n n C37 H37 K60 sing 255 n n N20 HN20 K60 sing 256 n n C29 H29 K60 sing 257 n n C25 H25 K60 sing 258 n n C25 H25A K60 sing 259 n n C44 H44 K60 sing 260 n n C45 H45 K60 sing 261 n n C40 H40 K60 sing 262 n n C42 H42 K60 sing 263 n n # _atom_sites.entry_id 3GI4 _atom_sites.fract_transf_matrix[1][1] 0.019682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K60 A 1 200 200 K60 K60 . D 3 PO4 A 1 501 501 PO4 PO4 . E 3 PO4 A 1 502 502 PO4 PO4 . F 4 ACT A 1 504 504 ACT ACT . G 4 ACT B 1 503 503 ACT ACT . H 5 HOH A 1 100 100 HOH WAT . H 5 HOH A 2 101 1 HOH WAT . H 5 HOH A 3 102 102 HOH WAT . H 5 HOH A 4 103 45 HOH WAT . H 5 HOH A 5 104 104 HOH WAT . H 5 HOH A 6 105 105 HOH WAT . H 5 HOH A 7 106 106 HOH WAT . H 5 HOH A 8 107 107 HOH WAT . H 5 HOH A 9 108 50 HOH WAT . H 5 HOH A 10 109 4 HOH WAT . H 5 HOH A 11 110 110 HOH WAT . H 5 HOH A 12 111 111 HOH WAT . H 5 HOH A 13 112 112 HOH WAT . H 5 HOH A 14 113 5 HOH WAT . H 5 HOH A 15 114 6 HOH WAT . H 5 HOH A 16 115 115 HOH WAT . H 5 HOH A 17 116 7 HOH WAT . H 5 HOH A 18 117 8 HOH WAT . H 5 HOH A 19 118 46 HOH WAT . H 5 HOH A 20 119 119 HOH WAT . H 5 HOH A 21 120 47 HOH WAT . H 5 HOH A 22 121 121 HOH WAT . H 5 HOH A 23 122 122 HOH WAT . H 5 HOH A 24 123 123 HOH WAT . H 5 HOH A 25 124 124 HOH WAT . H 5 HOH A 26 125 12 HOH WAT . H 5 HOH A 27 126 126 HOH WAT . H 5 HOH A 28 127 127 HOH WAT . H 5 HOH A 29 128 128 HOH WAT . H 5 HOH A 30 129 129 HOH WAT . H 5 HOH A 31 130 13 HOH WAT . H 5 HOH A 32 131 14 HOH WAT . H 5 HOH A 33 132 48 HOH WAT . H 5 HOH A 34 133 54 HOH WAT . H 5 HOH A 35 134 71 HOH WAT . H 5 HOH A 36 135 18 HOH WAT . H 5 HOH A 37 136 19 HOH WAT . H 5 HOH A 38 137 74 HOH WAT . H 5 HOH A 39 138 138 HOH WAT . H 5 HOH A 40 139 21 HOH WAT . H 5 HOH A 41 140 22 HOH WAT . H 5 HOH A 42 141 141 HOH WAT . H 5 HOH A 43 142 142 HOH WAT . H 5 HOH A 44 143 143 HOH WAT . H 5 HOH A 45 144 144 HOH WAT . H 5 HOH A 46 145 145 HOH WAT . H 5 HOH A 47 146 146 HOH WAT . H 5 HOH A 48 147 24 HOH WAT . H 5 HOH A 49 148 148 HOH WAT . H 5 HOH A 50 149 75 HOH WAT . H 5 HOH A 51 150 26 HOH WAT . H 5 HOH A 52 151 89 HOH WAT . H 5 HOH A 53 152 28 HOH WAT . H 5 HOH A 54 153 29 HOH WAT . H 5 HOH A 55 154 91 HOH WAT . H 5 HOH A 56 155 93 HOH WAT . H 5 HOH A 57 156 32 HOH WAT . H 5 HOH A 58 157 33 HOH WAT . H 5 HOH A 59 159 35 HOH WAT . H 5 HOH A 60 160 36 HOH WAT . H 5 HOH A 61 161 37 HOH WAT . H 5 HOH A 62 163 39 HOH WAT . H 5 HOH A 63 164 40 HOH WAT . H 5 HOH A 64 165 41 HOH WAT . H 5 HOH A 65 167 43 HOH WAT . H 5 HOH A 66 168 57 HOH WAT . H 5 HOH A 67 169 58 HOH WAT . H 5 HOH A 68 171 60 HOH WAT . H 5 HOH A 69 172 61 HOH WAT . H 5 HOH A 70 173 62 HOH WAT . H 5 HOH A 71 174 64 HOH WAT . H 5 HOH A 72 176 66 HOH WAT . H 5 HOH A 73 177 67 HOH WAT . H 5 HOH A 74 179 77 HOH WAT . H 5 HOH A 75 180 78 HOH WAT . H 5 HOH A 76 181 79 HOH WAT . H 5 HOH A 77 183 81 HOH WAT . H 5 HOH A 78 184 82 HOH WAT . H 5 HOH A 79 185 83 HOH WAT . H 5 HOH A 80 187 85 HOH WAT . H 5 HOH A 81 188 94 HOH WAT . H 5 HOH A 82 189 95 HOH WAT . H 5 HOH A 83 190 96 HOH WAT . H 5 HOH A 84 191 97 HOH WAT . H 5 HOH A 85 192 98 HOH WAT . I 5 HOH B 1 100 44 HOH WAT . I 5 HOH B 2 101 101 HOH WAT . I 5 HOH B 3 103 2 HOH WAT . I 5 HOH B 4 104 103 HOH WAT . I 5 HOH B 5 105 56 HOH WAT . I 5 HOH B 6 106 120 HOH WAT . I 5 HOH B 7 107 49 HOH WAT . I 5 HOH B 8 108 3 HOH WAT . I 5 HOH B 9 109 109 HOH WAT . I 5 HOH B 10 110 51 HOH WAT . I 5 HOH B 11 111 52 HOH WAT . I 5 HOH B 12 112 53 HOH WAT . I 5 HOH B 13 113 113 HOH WAT . I 5 HOH B 14 114 114 HOH WAT . I 5 HOH B 15 115 132 HOH WAT . I 5 HOH B 16 116 116 HOH WAT . I 5 HOH B 17 117 55 HOH WAT . I 5 HOH B 18 118 9 HOH WAT . I 5 HOH B 19 119 69 HOH WAT . I 5 HOH B 20 120 10 HOH WAT . I 5 HOH B 21 121 70 HOH WAT . I 5 HOH B 22 122 133 HOH WAT . I 5 HOH B 23 123 72 HOH WAT . I 5 HOH B 24 124 73 HOH WAT . I 5 HOH B 25 125 134 HOH WAT . I 5 HOH B 26 126 137 HOH WAT . I 5 HOH B 27 127 76 HOH WAT . I 5 HOH B 28 128 86 HOH WAT . I 5 HOH B 29 129 87 HOH WAT . I 5 HOH B 30 130 130 HOH WAT . I 5 HOH B 31 131 131 HOH WAT . I 5 HOH B 32 132 15 HOH WAT . I 5 HOH B 33 133 16 HOH WAT . I 5 HOH B 34 134 17 HOH WAT . I 5 HOH B 35 135 135 HOH WAT . I 5 HOH B 36 136 136 HOH WAT . I 5 HOH B 37 137 20 HOH WAT . I 5 HOH B 38 138 88 HOH WAT . I 5 HOH B 39 139 139 HOH WAT . I 5 HOH B 40 140 140 HOH WAT . I 5 HOH B 41 147 147 HOH WAT . I 5 HOH B 42 149 25 HOH WAT . I 5 HOH B 43 151 27 HOH WAT . I 5 HOH B 44 154 30 HOH WAT . I 5 HOH B 45 155 31 HOH WAT . I 5 HOH B 46 158 34 HOH WAT . I 5 HOH B 47 162 38 HOH WAT . I 5 HOH B 48 166 42 HOH WAT . I 5 HOH B 49 170 59 HOH WAT . I 5 HOH B 50 175 65 HOH WAT . I 5 HOH B 51 178 68 HOH WAT . I 5 HOH B 52 182 80 HOH WAT . I 5 HOH B 53 186 84 HOH WAT . I 5 HOH B 54 193 99 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 K60 . . . C 2 17.213 31.403 14.134 1 21.63 ? O10 K60 200 A 1 HETATM 2 S S8 K60 . . . C 2 17.996 32.463 14.698 1 21.49 ? S8 K60 200 A 1 HETATM 3 O O9 K60 . . . C 2 18.522 33.357 13.694 1 19.85 ? O9 K60 200 A 1 HETATM 4 C C5 K60 . . . C 2 17.095 33.287 15.77 1 21 ? C5 K60 200 A 1 HETATM 5 C C4 K60 . . . C 2 17.327 34.652 16.013 1 20.13 ? C4 K60 200 A 1 HETATM 6 C C3 K60 . . . C 2 16.544 35.315 16.967 1 20.87 ? C3 K60 200 A 1 HETATM 7 C C2 K60 . . . C 2 15.566 34.658 17.676 1 20.42 ? C2 K60 200 A 1 HETATM 8 O O19 K60 . . . C 2 14.959 35.516 18.548 1 21.31 ? O19 K60 200 A 1 HETATM 9 C C18 K60 . . . C 2 15.614 36.799 18.414 1 21.03 ? C18 K60 200 A 1 HETATM 10 O O29 K60 . . . C 2 16.583 36.619 17.364 1 19.99 ? O29 K60 200 A 1 HETATM 11 C C7 K60 . . . C 2 15.318 33.317 17.464 1 20.34 ? C7 K60 200 A 1 HETATM 12 C C6 K60 . . . C 2 16.094 32.632 16.505 1 19.44 ? C6 K60 200 A 1 HETATM 13 N N11 K60 . . . C 2 19.291 31.802 15.422 1 22.51 ? N11 K60 200 A 1 HETATM 14 C C12 K60 . . . C 2 20.068 32.781 16.228 1 21.07 ? C12 K60 200 A 1 HETATM 15 C C13 K60 . . . C 2 21.554 32.393 16.268 1 20.75 ? C13 K60 200 A 1 HETATM 16 C C14 K60 . . . C 2 22.205 32.286 14.883 1 20.78 ? C14 K60 200 A 1 HETATM 17 C C15 K60 . . . C 2 22.305 33.391 17.144 1 20.23 ? C15 K60 200 A 1 HETATM 18 C C16 K60 . . . C 2 19.02 30.546 16.141 1 21.25 ? C16 K60 200 A 1 HETATM 19 C C17 K60 . . . C 2 19.893 29.414 15.582 1 22.11 ? C17 K60 200 A 1 HETATM 20 O O18 K60 . . . C 2 19.82 28.297 16.49 1 21.45 ? O18 K60 200 A 1 HETATM 21 C C19 K60 . . . C 2 19.453 29.085 14.153 1 22.08 ? C19 K60 200 A 1 HETATM 22 C C32 K60 . . . C 2 18.138 28.3 14.071 1 21.32 ? C32 K60 200 A 1 HETATM 23 C C38 K60 . . . C 2 17.806 28.003 12.617 1 22.43 ? C38 K60 200 A 1 HETATM 24 C C33 K60 . . . C 2 17.946 26.707 12.118 1 21.03 ? C33 K60 200 A 1 HETATM 25 C C34 K60 . . . C 2 17.666 26.427 10.79 1 21.65 ? C34 K60 200 A 1 HETATM 26 C C35 K60 . . . C 2 17.237 27.43 9.932 1 20.46 ? C35 K60 200 A 1 HETATM 27 C C36 K60 . . . C 2 17.099 28.723 10.415 1 21.67 ? C36 K60 200 A 1 HETATM 28 C C37 K60 . . . C 2 17.384 29.014 11.754 1 21.21 ? C37 K60 200 A 1 HETATM 29 N N20 K60 . . . C 2 20.376 28.234 13.396 1 21.26 ? N20 K60 200 A 1 HETATM 30 C C21 K60 . . . C 2 21.124 28.677 12.376 1 22.14 ? C21 K60 200 A 1 HETATM 31 O O22 K60 . . . C 2 21.199 29.845 12.001 1 21.12 ? O22 K60 200 A 1 HETATM 32 C C29 K60 . . . C 2 21.9 27.648 11.604 1 21.08 ? C29 K60 200 A 1 HETATM 33 O O28 K60 . . . C 2 21.86 26.319 12.145 1 21.26 ? O28 K60 200 A 1 HETATM 34 C C26 K60 . . . C 2 21.512 25.429 11.058 1 22.73 ? C26 K60 200 A 1 HETATM 35 O O27 K60 . . . C 2 21.617 24.228 11.213 1 20.91 ? O27 K60 200 A 1 HETATM 36 C C25 K60 . . . C 2 21.21 27.56 10.23 1 21.94 ? C25 K60 200 A 1 HETATM 37 N N24 K60 . . . C 2 21.146 26.129 9.984 1 22.92 ? N24 K60 200 A 1 HETATM 38 C C43 K60 . . . C 2 20.769 25.623 8.718 1 22.97 ? C43 K60 200 A 1 HETATM 39 C C44 K60 . . . C 2 21.246 24.393 8.256 1 24.17 ? C44 K60 200 A 1 HETATM 40 C C45 K60 . . . C 2 20.873 23.908 7.005 1 24.35 ? C45 K60 200 A 1 HETATM 41 C C40 K60 . . . C 2 20.04 24.653 6.179 1 24.37 ? C40 K60 200 A 1 HETATM 42 C C42 K60 . . . C 2 19.93 26.367 7.872 1 23.91 ? C42 K60 200 A 1 HETATM 43 C C41 K60 . . . C 2 19.553 25.886 6.615 1 23.76 ? C41 K60 200 A 1 HETATM 44 C C46 K60 . . . C 2 18.64 26.702 5.73 1 24.76 ? C46 K60 200 A 1 HETATM 45 F F1 K60 . . . C 2 17.389 26.655 6.141 1 25.67 ? F1 K60 200 A 1 HETATM 46 F F2 K60 . . . C 2 18.636 26.232 4.513 1 25.32 ? F2 K60 200 A 1 HETATM 47 F F3 K60 . . . C 2 19.052 27.956 5.69 1 26.65 ? F3 K60 200 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 47 #