data_3GI4 # _model_server_result.job_id e2OieF-O6LSnbRrUqn6duw _model_server_result.datetime_utc '2025-08-31 08:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3GI4 # _exptl.entry_id 3GI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GI4 _cell.length_a 50.809 _cell.length_b 58.131 _cell.length_c 61.568 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 351 n n P O2 PO4 sing 352 n n P O3 PO4 sing 353 n n P O4 PO4 sing 354 n n # _atom_sites.entry_id 3GI4 _atom_sites.fract_transf_matrix[1][1] 0.019682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K60 A 1 200 200 K60 K60 . D 3 PO4 A 1 501 501 PO4 PO4 . E 3 PO4 A 1 502 502 PO4 PO4 . F 4 ACT A 1 504 504 ACT ACT . G 4 ACT B 1 503 503 ACT ACT . H 5 HOH A 1 100 100 HOH WAT . H 5 HOH A 2 101 1 HOH WAT . H 5 HOH A 3 102 102 HOH WAT . H 5 HOH A 4 103 45 HOH WAT . H 5 HOH A 5 104 104 HOH WAT . H 5 HOH A 6 105 105 HOH WAT . H 5 HOH A 7 106 106 HOH WAT . H 5 HOH A 8 107 107 HOH WAT . H 5 HOH A 9 108 50 HOH WAT . H 5 HOH A 10 109 4 HOH WAT . H 5 HOH A 11 110 110 HOH WAT . H 5 HOH A 12 111 111 HOH WAT . H 5 HOH A 13 112 112 HOH WAT . H 5 HOH A 14 113 5 HOH WAT . H 5 HOH A 15 114 6 HOH WAT . H 5 HOH A 16 115 115 HOH WAT . H 5 HOH A 17 116 7 HOH WAT . H 5 HOH A 18 117 8 HOH WAT . H 5 HOH A 19 118 46 HOH WAT . H 5 HOH A 20 119 119 HOH WAT . H 5 HOH A 21 120 47 HOH WAT . H 5 HOH A 22 121 121 HOH WAT . H 5 HOH A 23 122 122 HOH WAT . H 5 HOH A 24 123 123 HOH WAT . H 5 HOH A 25 124 124 HOH WAT . H 5 HOH A 26 125 12 HOH WAT . H 5 HOH A 27 126 126 HOH WAT . H 5 HOH A 28 127 127 HOH WAT . H 5 HOH A 29 128 128 HOH WAT . H 5 HOH A 30 129 129 HOH WAT . H 5 HOH A 31 130 13 HOH WAT . H 5 HOH A 32 131 14 HOH WAT . H 5 HOH A 33 132 48 HOH WAT . H 5 HOH A 34 133 54 HOH WAT . H 5 HOH A 35 134 71 HOH WAT . H 5 HOH A 36 135 18 HOH WAT . H 5 HOH A 37 136 19 HOH WAT . H 5 HOH A 38 137 74 HOH WAT . H 5 HOH A 39 138 138 HOH WAT . H 5 HOH A 40 139 21 HOH WAT . H 5 HOH A 41 140 22 HOH WAT . H 5 HOH A 42 141 141 HOH WAT . H 5 HOH A 43 142 142 HOH WAT . H 5 HOH A 44 143 143 HOH WAT . H 5 HOH A 45 144 144 HOH WAT . H 5 HOH A 46 145 145 HOH WAT . H 5 HOH A 47 146 146 HOH WAT . H 5 HOH A 48 147 24 HOH WAT . H 5 HOH A 49 148 148 HOH WAT . H 5 HOH A 50 149 75 HOH WAT . H 5 HOH A 51 150 26 HOH WAT . H 5 HOH A 52 151 89 HOH WAT . H 5 HOH A 53 152 28 HOH WAT . H 5 HOH A 54 153 29 HOH WAT . H 5 HOH A 55 154 91 HOH WAT . H 5 HOH A 56 155 93 HOH WAT . H 5 HOH A 57 156 32 HOH WAT . H 5 HOH A 58 157 33 HOH WAT . H 5 HOH A 59 159 35 HOH WAT . H 5 HOH A 60 160 36 HOH WAT . H 5 HOH A 61 161 37 HOH WAT . H 5 HOH A 62 163 39 HOH WAT . H 5 HOH A 63 164 40 HOH WAT . H 5 HOH A 64 165 41 HOH WAT . H 5 HOH A 65 167 43 HOH WAT . H 5 HOH A 66 168 57 HOH WAT . H 5 HOH A 67 169 58 HOH WAT . H 5 HOH A 68 171 60 HOH WAT . H 5 HOH A 69 172 61 HOH WAT . H 5 HOH A 70 173 62 HOH WAT . H 5 HOH A 71 174 64 HOH WAT . H 5 HOH A 72 176 66 HOH WAT . H 5 HOH A 73 177 67 HOH WAT . H 5 HOH A 74 179 77 HOH WAT . H 5 HOH A 75 180 78 HOH WAT . H 5 HOH A 76 181 79 HOH WAT . H 5 HOH A 77 183 81 HOH WAT . H 5 HOH A 78 184 82 HOH WAT . H 5 HOH A 79 185 83 HOH WAT . H 5 HOH A 80 187 85 HOH WAT . H 5 HOH A 81 188 94 HOH WAT . H 5 HOH A 82 189 95 HOH WAT . H 5 HOH A 83 190 96 HOH WAT . H 5 HOH A 84 191 97 HOH WAT . H 5 HOH A 85 192 98 HOH WAT . I 5 HOH B 1 100 44 HOH WAT . I 5 HOH B 2 101 101 HOH WAT . I 5 HOH B 3 103 2 HOH WAT . I 5 HOH B 4 104 103 HOH WAT . I 5 HOH B 5 105 56 HOH WAT . I 5 HOH B 6 106 120 HOH WAT . I 5 HOH B 7 107 49 HOH WAT . I 5 HOH B 8 108 3 HOH WAT . I 5 HOH B 9 109 109 HOH WAT . I 5 HOH B 10 110 51 HOH WAT . I 5 HOH B 11 111 52 HOH WAT . I 5 HOH B 12 112 53 HOH WAT . I 5 HOH B 13 113 113 HOH WAT . I 5 HOH B 14 114 114 HOH WAT . I 5 HOH B 15 115 132 HOH WAT . I 5 HOH B 16 116 116 HOH WAT . I 5 HOH B 17 117 55 HOH WAT . I 5 HOH B 18 118 9 HOH WAT . I 5 HOH B 19 119 69 HOH WAT . I 5 HOH B 20 120 10 HOH WAT . I 5 HOH B 21 121 70 HOH WAT . I 5 HOH B 22 122 133 HOH WAT . I 5 HOH B 23 123 72 HOH WAT . I 5 HOH B 24 124 73 HOH WAT . I 5 HOH B 25 125 134 HOH WAT . I 5 HOH B 26 126 137 HOH WAT . I 5 HOH B 27 127 76 HOH WAT . I 5 HOH B 28 128 86 HOH WAT . I 5 HOH B 29 129 87 HOH WAT . I 5 HOH B 30 130 130 HOH WAT . I 5 HOH B 31 131 131 HOH WAT . I 5 HOH B 32 132 15 HOH WAT . I 5 HOH B 33 133 16 HOH WAT . I 5 HOH B 34 134 17 HOH WAT . I 5 HOH B 35 135 135 HOH WAT . I 5 HOH B 36 136 136 HOH WAT . I 5 HOH B 37 137 20 HOH WAT . I 5 HOH B 38 138 88 HOH WAT . I 5 HOH B 39 139 139 HOH WAT . I 5 HOH B 40 140 140 HOH WAT . I 5 HOH B 41 147 147 HOH WAT . I 5 HOH B 42 149 25 HOH WAT . I 5 HOH B 43 151 27 HOH WAT . I 5 HOH B 44 154 30 HOH WAT . I 5 HOH B 45 155 31 HOH WAT . I 5 HOH B 46 158 34 HOH WAT . I 5 HOH B 47 162 38 HOH WAT . I 5 HOH B 48 166 42 HOH WAT . I 5 HOH B 49 170 59 HOH WAT . I 5 HOH B 50 175 65 HOH WAT . I 5 HOH B 51 178 68 HOH WAT . I 5 HOH B 52 182 80 HOH WAT . I 5 HOH B 53 186 84 HOH WAT . I 5 HOH B 54 193 99 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 45.182 26.31 21.893 1 31.81 ? P PO4 501 A 1 HETATM 2 O O1 PO4 . . . D 3 46.259 25.607 22.706 1 32.36 ? O1 PO4 501 A 1 HETATM 3 O O2 PO4 . . . D 3 45.823 27.077 20.77 1 32.92 ? O2 PO4 501 A 1 HETATM 4 O O3 PO4 . . . D 3 44.237 25.28 21.313 1 31.4 ? O3 PO4 501 A 1 HETATM 5 O O4 PO4 . . . D 3 44.368 27.256 22.75 1 31.99 ? O4 PO4 501 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #