data_3GID # _model_server_result.job_id mY8LaUENVYCJsYZe2guaDA _model_server_result.datetime_utc '2024-10-18 15:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 3GID # _exptl.entry_id 3GID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 520.655 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SORAPHEN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GID _cell.length_a 138.339 _cell.length_b 141 _cell.length_c 123.615 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GID _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H44 O8' _chem_comp.formula_weight 520.655 _chem_comp.id S1A _chem_comp.mon_nstd_flag . _chem_comp.name 'SORAPHEN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S1A sing 277 n n C1 O1 S1A doub 278 n n C1 O18 S1A sing 279 n n C2 C3 S1A sing 280 n n C2 C19 S1A sing 281 n n C2 H2 S1A sing 282 n n C3 C4 S1A sing 283 n n C3 O3 S1A sing 284 n n C3 O7 S1A sing 285 n n C4 C5 S1A sing 286 n n C4 O4 S1A sing 287 n n C4 H4 S1A sing 288 n n C5 C6 S1A sing 289 n n C5 O5 S1A sing 290 n n C5 H5 S1A sing 291 n n C6 C7 S1A sing 292 n n C6 C21 S1A sing 293 n n C6 H6 S1A sing 294 n n C7 C8 S1A sing 295 n n C7 O7 S1A sing 296 n n C7 H7 S1A sing 297 n n C8 C9 S1A sing 298 n n C8 C22 S1A sing 299 n n C8 H8 S1A sing 300 n n C9 C10 S1A doub 301 e n C9 H9 S1A sing 302 n n C10 C11 S1A sing 303 n n C10 H10 S1A sing 304 n n C11 C12 S1A sing 305 n n C11 O11 S1A sing 306 n n C11 H11 S1A sing 307 n n C12 C13 S1A sing 308 n n C12 O12 S1A sing 309 n n C12 H12 S1A sing 310 n n C13 C14 S1A sing 311 n n C13 H131 S1A sing 312 n n C13 H132 S1A sing 313 n n C14 C15 S1A sing 314 n n C14 H141 S1A sing 315 n n C14 H142 S1A sing 316 n n C15 C16 S1A sing 317 n n C15 H151 S1A sing 318 n n C15 H152 S1A sing 319 n n C16 C17 S1A sing 320 n n C16 H161 S1A sing 321 n n C16 H162 S1A sing 322 n n C17 C25 S1A sing 323 n n C17 O18 S1A sing 324 n n C17 H17 S1A sing 325 n n C19 H191 S1A sing 326 n n C19 H192 S1A sing 327 n n C19 H193 S1A sing 328 n n C20 O4 S1A sing 329 n n C20 H201 S1A sing 330 n n C20 H202 S1A sing 331 n n C20 H203 S1A sing 332 n n C21 H211 S1A sing 333 n n C21 H212 S1A sing 334 n n C21 H213 S1A sing 335 n n C22 H221 S1A sing 336 n n C22 H222 S1A sing 337 n n C22 H223 S1A sing 338 n n C23 O11 S1A sing 339 n n C23 H231 S1A sing 340 n n C23 H232 S1A sing 341 n n C23 H233 S1A sing 342 n n C24 O12 S1A sing 343 n n C24 H241 S1A sing 344 n n C24 H242 S1A sing 345 n n C24 H243 S1A sing 346 n n C25 C26 S1A doub 347 n y C25 C30 S1A sing 348 n y C26 C27 S1A sing 349 n y C26 H26 S1A sing 350 n n C27 C28 S1A doub 351 n y C27 H27 S1A sing 352 n n C28 C29 S1A sing 353 n y C28 H28 S1A sing 354 n n C29 C30 S1A doub 355 n y C29 H29 S1A sing 356 n n C30 H30 S1A sing 357 n n O3 H3 S1A sing 358 n n O5 HA S1A sing 359 n n # _atom_sites.entry_id 3GID _atom_sites.fract_transf_matrix[1][1] 0.007229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S1A A 1 1000 1000 S1A INH . D 2 S1A B 1 1000 1000 S1A INH . E 3 HOH A 1 2 2 HOH WAT . E 3 HOH A 2 3 3 HOH WAT . E 3 HOH A 3 5 5 HOH WAT . E 3 HOH A 4 6 6 HOH WAT . E 3 HOH A 5 10 10 HOH WAT . E 3 HOH A 6 11 11 HOH WAT . E 3 HOH A 7 13 13 HOH WAT . E 3 HOH A 8 14 14 HOH WAT . E 3 HOH A 9 16 16 HOH WAT . E 3 HOH A 10 18 18 HOH WAT . E 3 HOH A 11 19 19 HOH WAT . E 3 HOH A 12 20 20 HOH WAT . E 3 HOH A 13 22 22 HOH WAT . E 3 HOH A 14 24 24 HOH WAT . E 3 HOH A 15 27 27 HOH WAT . E 3 HOH A 16 30 30 HOH WAT . E 3 HOH A 17 33 33 HOH WAT . E 3 HOH A 18 36 36 HOH WAT . E 3 HOH A 19 37 37 HOH WAT . E 3 HOH A 20 38 38 HOH WAT . E 3 HOH A 21 42 42 HOH WAT . E 3 HOH A 22 45 45 HOH WAT . E 3 HOH A 23 49 49 HOH WAT . E 3 HOH A 24 53 53 HOH WAT . E 3 HOH A 25 54 54 HOH WAT . E 3 HOH A 26 58 58 HOH WAT . E 3 HOH A 27 62 62 HOH WAT . E 3 HOH A 28 63 63 HOH WAT . E 3 HOH A 29 65 65 HOH WAT . E 3 HOH A 30 66 66 HOH WAT . E 3 HOH A 31 67 67 HOH WAT . E 3 HOH A 32 68 68 HOH WAT . E 3 HOH A 33 69 69 HOH WAT . E 3 HOH A 34 70 70 HOH WAT . E 3 HOH A 35 74 74 HOH WAT . E 3 HOH A 36 80 80 HOH WAT . E 3 HOH A 37 81 81 HOH WAT . E 3 HOH A 38 82 82 HOH WAT . E 3 HOH A 39 83 83 HOH WAT . E 3 HOH A 40 86 86 HOH WAT . E 3 HOH A 41 88 88 HOH WAT . E 3 HOH A 42 92 92 HOH WAT . E 3 HOH A 43 94 94 HOH WAT . E 3 HOH A 44 95 95 HOH WAT . E 3 HOH A 45 96 96 HOH WAT . E 3 HOH A 46 97 97 HOH WAT . E 3 HOH A 47 100 100 HOH WAT . E 3 HOH A 48 101 101 HOH WAT . E 3 HOH A 49 103 103 HOH WAT . E 3 HOH A 50 105 105 HOH WAT . E 3 HOH A 51 106 106 HOH WAT . E 3 HOH A 52 108 108 HOH WAT . E 3 HOH A 53 112 112 HOH WAT . E 3 HOH A 54 114 114 HOH WAT . E 3 HOH A 55 115 115 HOH WAT . E 3 HOH A 56 119 119 HOH WAT . E 3 HOH A 57 120 120 HOH WAT . E 3 HOH A 58 121 121 HOH WAT . E 3 HOH A 59 123 123 HOH WAT . E 3 HOH A 60 127 127 HOH WAT . E 3 HOH A 61 130 130 HOH WAT . E 3 HOH A 62 131 131 HOH WAT . E 3 HOH A 63 136 136 HOH WAT . E 3 HOH A 64 137 137 HOH WAT . E 3 HOH A 65 138 138 HOH WAT . E 3 HOH A 66 140 140 HOH WAT . E 3 HOH A 67 147 147 HOH WAT . E 3 HOH A 68 148 148 HOH WAT . E 3 HOH A 69 149 149 HOH WAT . E 3 HOH A 70 153 153 HOH WAT . E 3 HOH A 71 154 154 HOH WAT . E 3 HOH A 72 157 157 HOH WAT . E 3 HOH A 73 158 158 HOH WAT . E 3 HOH A 74 160 160 HOH WAT . E 3 HOH A 75 161 161 HOH WAT . E 3 HOH A 76 164 164 HOH WAT . E 3 HOH A 77 165 165 HOH WAT . E 3 HOH A 78 168 168 HOH WAT . E 3 HOH A 79 169 169 HOH WAT . E 3 HOH A 80 170 170 HOH WAT . E 3 HOH A 81 172 172 HOH WAT . E 3 HOH A 82 178 178 HOH WAT . E 3 HOH A 83 181 181 HOH WAT . E 3 HOH A 84 183 183 HOH WAT . E 3 HOH A 85 185 185 HOH WAT . E 3 HOH A 86 186 186 HOH WAT . E 3 HOH A 87 191 191 HOH WAT . E 3 HOH A 88 192 192 HOH WAT . E 3 HOH A 89 193 193 HOH WAT . E 3 HOH A 90 195 195 HOH WAT . E 3 HOH A 91 200 200 HOH WAT . E 3 HOH A 92 202 202 HOH WAT . E 3 HOH A 93 205 205 HOH WAT . E 3 HOH A 94 206 206 HOH WAT . E 3 HOH A 95 208 208 HOH WAT . E 3 HOH A 96 210 210 HOH WAT . E 3 HOH A 97 211 211 HOH WAT . E 3 HOH A 98 219 219 HOH WAT . E 3 HOH A 99 220 220 HOH WAT . E 3 HOH A 100 761 221 HOH WAT . F 3 HOH B 1 1 1 HOH WAT . F 3 HOH B 2 4 4 HOH WAT . F 3 HOH B 3 7 7 HOH WAT . F 3 HOH B 4 8 8 HOH WAT . F 3 HOH B 5 9 9 HOH WAT . F 3 HOH B 6 12 12 HOH WAT . F 3 HOH B 7 15 15 HOH WAT . F 3 HOH B 8 17 17 HOH WAT . F 3 HOH B 9 21 21 HOH WAT . F 3 HOH B 10 23 23 HOH WAT . F 3 HOH B 11 25 25 HOH WAT . F 3 HOH B 12 26 26 HOH WAT . F 3 HOH B 13 28 28 HOH WAT . F 3 HOH B 14 29 29 HOH WAT . F 3 HOH B 15 31 31 HOH WAT . F 3 HOH B 16 32 32 HOH WAT . F 3 HOH B 17 35 35 HOH WAT . F 3 HOH B 18 41 41 HOH WAT . F 3 HOH B 19 43 43 HOH WAT . F 3 HOH B 20 44 44 HOH WAT . F 3 HOH B 21 46 46 HOH WAT . F 3 HOH B 22 47 47 HOH WAT . F 3 HOH B 23 48 48 HOH WAT . F 3 HOH B 24 50 50 HOH WAT . F 3 HOH B 25 51 51 HOH WAT . F 3 HOH B 26 52 52 HOH WAT . F 3 HOH B 27 56 56 HOH WAT . F 3 HOH B 28 57 57 HOH WAT . F 3 HOH B 29 59 59 HOH WAT . F 3 HOH B 30 60 60 HOH WAT . F 3 HOH B 31 61 61 HOH WAT . F 3 HOH B 32 64 64 HOH WAT . F 3 HOH B 33 71 71 HOH WAT . F 3 HOH B 34 72 72 HOH WAT . F 3 HOH B 35 75 75 HOH WAT . F 3 HOH B 36 76 76 HOH WAT . F 3 HOH B 37 78 78 HOH WAT . F 3 HOH B 38 79 79 HOH WAT . F 3 HOH B 39 84 84 HOH WAT . F 3 HOH B 40 85 85 HOH WAT . F 3 HOH B 41 87 87 HOH WAT . F 3 HOH B 42 89 89 HOH WAT . F 3 HOH B 43 90 90 HOH WAT . F 3 HOH B 44 91 91 HOH WAT . F 3 HOH B 45 93 93 HOH WAT . F 3 HOH B 46 98 98 HOH WAT . F 3 HOH B 47 99 99 HOH WAT . F 3 HOH B 48 102 102 HOH WAT . F 3 HOH B 49 104 104 HOH WAT . F 3 HOH B 50 107 107 HOH WAT . F 3 HOH B 51 110 110 HOH WAT . F 3 HOH B 52 111 111 HOH WAT . F 3 HOH B 53 113 113 HOH WAT . F 3 HOH B 54 116 116 HOH WAT . F 3 HOH B 55 117 117 HOH WAT . F 3 HOH B 56 118 118 HOH WAT . F 3 HOH B 57 122 122 HOH WAT . F 3 HOH B 58 124 124 HOH WAT . F 3 HOH B 59 125 125 HOH WAT . F 3 HOH B 60 126 126 HOH WAT . F 3 HOH B 61 128 128 HOH WAT . F 3 HOH B 62 133 133 HOH WAT . F 3 HOH B 63 135 135 HOH WAT . F 3 HOH B 64 139 139 HOH WAT . F 3 HOH B 65 141 141 HOH WAT . F 3 HOH B 66 142 142 HOH WAT . F 3 HOH B 67 143 143 HOH WAT . F 3 HOH B 68 144 144 HOH WAT . F 3 HOH B 69 146 146 HOH WAT . F 3 HOH B 70 150 150 HOH WAT . F 3 HOH B 71 151 151 HOH WAT . F 3 HOH B 72 155 155 HOH WAT . F 3 HOH B 73 159 159 HOH WAT . F 3 HOH B 74 162 162 HOH WAT . F 3 HOH B 75 166 166 HOH WAT . F 3 HOH B 76 167 167 HOH WAT . F 3 HOH B 77 173 173 HOH WAT . F 3 HOH B 78 175 175 HOH WAT . F 3 HOH B 79 176 176 HOH WAT . F 3 HOH B 80 179 179 HOH WAT . F 3 HOH B 81 180 180 HOH WAT . F 3 HOH B 82 182 182 HOH WAT . F 3 HOH B 83 184 184 HOH WAT . F 3 HOH B 84 187 187 HOH WAT . F 3 HOH B 85 188 188 HOH WAT . F 3 HOH B 86 189 189 HOH WAT . F 3 HOH B 87 194 194 HOH WAT . F 3 HOH B 88 196 196 HOH WAT . F 3 HOH B 89 197 197 HOH WAT . F 3 HOH B 90 199 199 HOH WAT . F 3 HOH B 91 203 203 HOH WAT . F 3 HOH B 92 213 213 HOH WAT . F 3 HOH B 93 214 214 HOH WAT . F 3 HOH B 94 215 215 HOH WAT . F 3 HOH B 95 216 216 HOH WAT . F 3 HOH B 96 217 217 HOH WAT . F 3 HOH B 97 761 222 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S1A . . . C 2 -27.545 -20.105 40.029 1 21.19 ? C1 S1A 1000 A 1 HETATM 2 C C2 S1A . . . C 2 -26.817 -20.35 38.698 1 18.82 ? C2 S1A 1000 A 1 HETATM 3 C C3 S1A . . . C 2 -25.822 -19.19 38.342 1 20.83 ? C3 S1A 1000 A 1 HETATM 4 C C4 S1A . . . C 2 -25.064 -19.422 36.942 1 20.37 ? C4 S1A 1000 A 1 HETATM 5 C C5 S1A . . . C 2 -23.908 -18.345 36.82 1 18.73 ? C5 S1A 1000 A 1 HETATM 6 C C6 S1A . . . C 2 -22.94 -18.406 38.045 1 18.96 ? C6 S1A 1000 A 1 HETATM 7 C C7 S1A . . . C 2 -23.81 -18.121 39.359 1 20.8 ? C7 S1A 1000 A 1 HETATM 8 C C8 S1A . . . C 2 -22.992 -18.068 40.7 1 22.06 ? C8 S1A 1000 A 1 HETATM 9 C C9 S1A . . . C 2 -23.982 -17.814 41.857 1 22.8 ? C9 S1A 1000 A 1 HETATM 10 C C10 S1A . . . C 2 -24.317 -16.604 42.388 1 26.3 ? C10 S1A 1000 A 1 HETATM 11 C C11 S1A . . . C 2 -25.321 -16.403 43.522 1 26.57 ? C11 S1A 1000 A 1 HETATM 12 C C12 S1A . . . C 2 -26.327 -15.242 43.224 1 24.33 ? C12 S1A 1000 A 1 HETATM 13 C C13 S1A . . . C 2 -27.244 -15.502 41.984 1 22.97 ? C13 S1A 1000 A 1 HETATM 14 C C14 S1A . . . C 2 -28.159 -16.731 42.186 1 23.83 ? C14 S1A 1000 A 1 HETATM 15 C C15 S1A . . . C 2 -29.282 -16.82 41.128 1 22.7 ? C15 S1A 1000 A 1 HETATM 16 C C16 S1A . . . C 2 -30.228 -18.003 41.398 1 19.47 ? C16 S1A 1000 A 1 HETATM 17 C C17 S1A . . . C 2 -29.576 -19.398 41.162 1 24.05 ? C17 S1A 1000 A 1 HETATM 18 C C19 S1A . . . C 2 -27.9 -20.604 37.594 1 15.52 ? C19 S1A 1000 A 1 HETATM 19 C C20 S1A . . . C 2 -24.522 -21.301 35.465 1 21.92 ? C20 S1A 1000 A 1 HETATM 20 C C21 S1A . . . C 2 -22.19 -19.777 38.141 1 18.11 ? C21 S1A 1000 A 1 HETATM 21 C C22 S1A . . . C 2 -21.865 -16.958 40.627 1 21.03 ? C22 S1A 1000 A 1 HETATM 22 C C23 S1A . . . C 2 -24.245 -17.216 45.544 1 32.71 ? C23 S1A 1000 A 1 HETATM 23 C C24 S1A . . . C 2 -26.239 -12.774 43.059 1 22.42 ? C24 S1A 1000 A 1 HETATM 24 C C25 S1A . . . C 2 -30.718 -20.418 41.011 1 22.2 ? C25 S1A 1000 A 1 HETATM 25 C C26 S1A . . . C 2 -31.412 -20.54 39.77 1 21.59 ? C26 S1A 1000 A 1 HETATM 26 C C27 S1A . . . C 2 -32.464 -21.478 39.628 1 22.05 ? C27 S1A 1000 A 1 HETATM 27 C C28 S1A . . . C 2 -32.829 -22.301 40.736 1 21.58 ? C28 S1A 1000 A 1 HETATM 28 C C29 S1A . . . C 2 -32.142 -22.177 41.972 1 18.52 ? C29 S1A 1000 A 1 HETATM 29 C C30 S1A . . . C 2 -31.09 -21.238 42.106 1 21.12 ? C30 S1A 1000 A 1 HETATM 30 O O1 S1A . . . C 2 -27.085 -20.565 41.058 1 20.18 ? O1 S1A 1000 A 1 HETATM 31 O O3 S1A . . . C 2 -26.54 -17.946 38.278 1 19.96 ? O3 S1A 1000 A 1 HETATM 32 O O4 S1A . . . C 2 -24.611 -20.786 36.823 1 21.63 ? O4 S1A 1000 A 1 HETATM 33 O O5 S1A . . . C 2 -24.448 -17.034 36.665 1 18.64 ? O5 S1A 1000 A 1 HETATM 34 O O7 S1A . . . C 2 -24.857 -19.155 39.453 1 21.04 ? O7 S1A 1000 A 1 HETATM 35 O O11 S1A . . . C 2 -24.64 -16.067 44.758 1 31.48 ? O11 S1A 1000 A 1 HETATM 36 O O12 S1A . . . C 2 -25.52 -14.044 43.083 1 24.75 ? O12 S1A 1000 A 1 HETATM 37 O O18 S1A . . . C 2 -28.706 -19.37 39.967 1 22.57 ? O18 S1A 1000 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #