data_3GJ3 # _model_server_result.job_id GyrKa8vsOzpLR9zY6Jopkg _model_server_result.datetime_utc '2024-12-07 02:08:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3GJ3 # _exptl.entry_id 3GJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GJ3 _cell.length_a 59.709 _cell.length_b 80.236 _cell.length_c 57.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 29 A THR 24 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 C MG MG . A MG 301 1_555 D O1B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 C MG MG . A MG 301 1_555 F O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 C MG MG . A MG 301 1_555 F O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 C MG MG . A MG 301 1_555 F O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 C MG MG . A MG 301 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 E ZN ZN . B ZN 300 1_555 B SG CYS 10 B CYS 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 E ZN ZN . B ZN 300 1_555 B SG CYS 13 B CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc9 E ZN ZN . B ZN 300 1_555 B SG CYS 24 B CYS 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 E ZN ZN . B ZN 300 1_555 B SG CYS 27 B CYS 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GJ3 _atom_sites.fract_transf_matrix[1][1] 0.016748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 301 MG MG . D 4 GDP A 1 302 302 GDP GDP . E 5 ZN B 1 300 300 ZN ZN . F 6 HOH A 1 218 218 HOH HOH . F 6 HOH A 2 219 219 HOH HOH . F 6 HOH A 3 220 220 HOH HOH . F 6 HOH A 4 221 221 HOH HOH . F 6 HOH A 5 222 222 HOH HOH . F 6 HOH A 6 223 223 HOH HOH . F 6 HOH A 7 224 224 HOH HOH . F 6 HOH A 8 225 225 HOH HOH . F 6 HOH A 9 226 226 HOH HOH . F 6 HOH A 10 227 227 HOH HOH . F 6 HOH A 11 228 228 HOH HOH . F 6 HOH A 12 229 229 HOH HOH . F 6 HOH A 13 230 230 HOH HOH . F 6 HOH A 14 231 231 HOH HOH . F 6 HOH A 15 232 232 HOH HOH . F 6 HOH A 16 233 233 HOH HOH . F 6 HOH A 17 235 235 HOH HOH . F 6 HOH A 18 237 237 HOH HOH . F 6 HOH A 19 238 238 HOH HOH . F 6 HOH A 20 239 239 HOH HOH . F 6 HOH A 21 240 240 HOH HOH . F 6 HOH A 22 241 241 HOH HOH . F 6 HOH A 23 242 242 HOH HOH . F 6 HOH A 24 243 243 HOH HOH . F 6 HOH A 25 244 244 HOH HOH . F 6 HOH A 26 245 245 HOH HOH . F 6 HOH A 27 246 246 HOH HOH . F 6 HOH A 28 247 247 HOH HOH . F 6 HOH A 29 248 248 HOH HOH . F 6 HOH A 30 249 249 HOH HOH . F 6 HOH A 31 250 250 HOH HOH . F 6 HOH A 32 251 251 HOH HOH . F 6 HOH A 33 252 252 HOH HOH . F 6 HOH A 34 253 253 HOH HOH . F 6 HOH A 35 254 254 HOH HOH . F 6 HOH A 36 255 255 HOH HOH . F 6 HOH A 37 256 256 HOH HOH . F 6 HOH A 38 257 257 HOH HOH . F 6 HOH A 39 258 258 HOH HOH . F 6 HOH A 40 262 262 HOH HOH . F 6 HOH A 41 263 263 HOH HOH . F 6 HOH A 42 264 264 HOH HOH . F 6 HOH A 43 266 266 HOH HOH . F 6 HOH A 44 267 267 HOH HOH . F 6 HOH A 45 268 268 HOH HOH . F 6 HOH A 46 270 270 HOH HOH . F 6 HOH A 47 271 271 HOH HOH . F 6 HOH A 48 272 272 HOH HOH . F 6 HOH A 49 273 273 HOH HOH . F 6 HOH A 50 274 274 HOH HOH . F 6 HOH A 51 276 276 HOH HOH . F 6 HOH A 52 277 277 HOH HOH . F 6 HOH A 53 278 278 HOH HOH . F 6 HOH A 54 279 279 HOH HOH . F 6 HOH A 55 281 281 HOH HOH . F 6 HOH A 56 282 282 HOH HOH . F 6 HOH A 57 283 283 HOH HOH . F 6 HOH A 58 284 284 HOH HOH . F 6 HOH A 59 285 285 HOH HOH . F 6 HOH A 60 286 286 HOH HOH . F 6 HOH A 61 288 288 HOH HOH . F 6 HOH A 62 289 289 HOH HOH . F 6 HOH A 63 290 290 HOH HOH . F 6 HOH A 64 291 291 HOH HOH . F 6 HOH A 65 292 292 HOH HOH . F 6 HOH A 66 293 293 HOH HOH . F 6 HOH A 67 294 294 HOH HOH . F 6 HOH A 68 295 295 HOH HOH . F 6 HOH A 69 296 296 HOH HOH . F 6 HOH A 70 297 297 HOH HOH . F 6 HOH A 71 298 298 HOH HOH . F 6 HOH A 72 299 299 HOH HOH . F 6 HOH A 73 300 300 HOH HOH . F 6 HOH A 74 303 303 HOH HOH . F 6 HOH A 75 304 304 HOH HOH . F 6 HOH A 76 305 305 HOH HOH . F 6 HOH A 77 306 306 HOH HOH . F 6 HOH A 78 307 307 HOH HOH . F 6 HOH A 79 308 308 HOH HOH . F 6 HOH A 80 309 309 HOH HOH . F 6 HOH A 81 310 310 HOH HOH . F 6 HOH A 82 311 311 HOH HOH . F 6 HOH A 83 312 312 HOH HOH . F 6 HOH A 84 313 313 HOH HOH . F 6 HOH A 85 314 314 HOH HOH . F 6 HOH A 86 315 315 HOH HOH . F 6 HOH A 87 316 316 HOH HOH . F 6 HOH A 88 317 317 HOH HOH . F 6 HOH A 89 318 318 HOH HOH . F 6 HOH A 90 319 319 HOH HOH . F 6 HOH A 91 320 320 HOH HOH . F 6 HOH A 92 321 321 HOH HOH . F 6 HOH A 93 322 322 HOH HOH . F 6 HOH A 94 323 323 HOH HOH . F 6 HOH A 95 324 324 HOH HOH . F 6 HOH A 96 325 325 HOH HOH . F 6 HOH A 97 326 326 HOH HOH . F 6 HOH A 98 327 327 HOH HOH . F 6 HOH A 99 328 328 HOH HOH . F 6 HOH A 100 329 329 HOH HOH . F 6 HOH A 101 330 330 HOH HOH . F 6 HOH A 102 331 331 HOH HOH . F 6 HOH A 103 332 332 HOH HOH . F 6 HOH A 104 333 333 HOH HOH . F 6 HOH A 105 334 334 HOH HOH . F 6 HOH A 106 335 335 HOH HOH . F 6 HOH A 107 336 336 HOH HOH . F 6 HOH A 108 337 337 HOH HOH . F 6 HOH A 109 338 338 HOH HOH . F 6 HOH A 110 339 339 HOH HOH . F 6 HOH A 111 340 340 HOH HOH . F 6 HOH A 112 341 341 HOH HOH . F 6 HOH A 113 342 342 HOH HOH . F 6 HOH A 114 343 343 HOH HOH . F 6 HOH A 115 344 344 HOH HOH . F 6 HOH A 116 345 345 HOH HOH . F 6 HOH A 117 346 346 HOH HOH . F 6 HOH A 118 347 347 HOH HOH . F 6 HOH A 119 348 348 HOH HOH . F 6 HOH A 120 349 349 HOH HOH . F 6 HOH A 121 350 350 HOH HOH . F 6 HOH A 122 351 351 HOH HOH . F 6 HOH A 123 352 352 HOH HOH . F 6 HOH A 124 353 353 HOH HOH . F 6 HOH A 125 354 354 HOH HOH . F 6 HOH A 126 355 355 HOH HOH . F 6 HOH A 127 356 356 HOH HOH . F 6 HOH A 128 357 357 HOH HOH . F 6 HOH A 129 358 358 HOH HOH . F 6 HOH A 130 359 359 HOH HOH . F 6 HOH A 131 360 360 HOH HOH . F 6 HOH A 132 361 361 HOH HOH . F 6 HOH A 133 362 362 HOH HOH . F 6 HOH A 134 363 363 HOH HOH . F 6 HOH A 135 364 364 HOH HOH . F 6 HOH A 136 365 365 HOH HOH . F 6 HOH A 137 366 366 HOH HOH . F 6 HOH A 138 367 367 HOH HOH . F 6 HOH A 139 368 368 HOH HOH . F 6 HOH A 140 369 369 HOH HOH . F 6 HOH A 141 370 370 HOH HOH . F 6 HOH A 142 371 371 HOH HOH . F 6 HOH A 143 372 372 HOH HOH . F 6 HOH A 144 373 373 HOH HOH . F 6 HOH A 145 374 374 HOH HOH . F 6 HOH A 146 375 375 HOH HOH . F 6 HOH A 147 376 376 HOH HOH . F 6 HOH A 148 377 377 HOH HOH . F 6 HOH A 149 378 378 HOH HOH . F 6 HOH A 150 379 379 HOH HOH . F 6 HOH A 151 380 380 HOH HOH . F 6 HOH A 152 381 381 HOH HOH . F 6 HOH A 153 382 382 HOH HOH . F 6 HOH A 154 383 383 HOH HOH . F 6 HOH A 155 384 384 HOH HOH . F 6 HOH A 156 385 385 HOH HOH . F 6 HOH A 157 386 386 HOH HOH . F 6 HOH A 158 387 387 HOH HOH . F 6 HOH A 159 388 388 HOH HOH . F 6 HOH A 160 389 389 HOH HOH . F 6 HOH A 161 390 390 HOH HOH . F 6 HOH A 162 391 391 HOH HOH . F 6 HOH A 163 392 392 HOH HOH . F 6 HOH A 164 393 393 HOH HOH . F 6 HOH A 165 394 394 HOH HOH . F 6 HOH A 166 395 395 HOH HOH . F 6 HOH A 167 396 396 HOH HOH . F 6 HOH A 168 397 397 HOH HOH . F 6 HOH A 169 398 398 HOH HOH . F 6 HOH A 170 399 399 HOH HOH . F 6 HOH A 171 400 400 HOH HOH . F 6 HOH A 172 401 401 HOH HOH . F 6 HOH A 173 402 402 HOH HOH . F 6 HOH A 174 403 403 HOH HOH . F 6 HOH A 175 404 404 HOH HOH . F 6 HOH A 176 405 405 HOH HOH . F 6 HOH A 177 406 406 HOH HOH . F 6 HOH A 178 407 407 HOH HOH . F 6 HOH A 179 408 408 HOH HOH . F 6 HOH A 180 409 409 HOH HOH . F 6 HOH A 181 410 410 HOH HOH . F 6 HOH A 182 411 411 HOH HOH . F 6 HOH A 183 412 412 HOH HOH . F 6 HOH A 184 413 413 HOH HOH . F 6 HOH A 185 414 414 HOH HOH . F 6 HOH A 186 415 415 HOH HOH . F 6 HOH A 187 416 416 HOH HOH . F 6 HOH A 188 417 417 HOH HOH . F 6 HOH A 189 419 419 HOH HOH . F 6 HOH A 190 420 420 HOH HOH . F 6 HOH A 191 421 421 HOH HOH . F 6 HOH A 192 422 422 HOH HOH . F 6 HOH A 193 423 423 HOH HOH . F 6 HOH A 194 424 424 HOH HOH . F 6 HOH A 195 425 425 HOH HOH . F 6 HOH A 196 426 426 HOH HOH . F 6 HOH A 197 427 427 HOH HOH . F 6 HOH A 198 428 428 HOH HOH . F 6 HOH A 199 429 429 HOH HOH . F 6 HOH A 200 430 430 HOH HOH . F 6 HOH A 201 431 431 HOH HOH . F 6 HOH A 202 432 432 HOH HOH . F 6 HOH A 203 433 433 HOH HOH . F 6 HOH A 204 434 434 HOH HOH . F 6 HOH A 205 435 435 HOH HOH . F 6 HOH A 206 436 436 HOH HOH . F 6 HOH A 207 437 437 HOH HOH . F 6 HOH A 208 438 438 HOH HOH . F 6 HOH A 209 439 439 HOH HOH . F 6 HOH A 210 440 440 HOH HOH . F 6 HOH A 211 441 441 HOH HOH . F 6 HOH A 212 442 442 HOH HOH . F 6 HOH A 213 443 443 HOH HOH . F 6 HOH A 214 444 444 HOH HOH . F 6 HOH A 215 445 445 HOH HOH . F 6 HOH A 216 446 446 HOH HOH . F 6 HOH A 217 447 447 HOH HOH . F 6 HOH A 218 448 448 HOH HOH . F 6 HOH A 219 449 449 HOH HOH . F 6 HOH A 220 450 450 HOH HOH . F 6 HOH A 221 451 451 HOH HOH . F 6 HOH A 222 452 452 HOH HOH . F 6 HOH A 223 453 453 HOH HOH . F 6 HOH A 224 454 454 HOH HOH . G 6 HOH B 1 8 8 HOH HOH . G 6 HOH B 2 10 10 HOH HOH . G 6 HOH B 3 31 31 HOH HOH . G 6 HOH B 4 39 39 HOH HOH . G 6 HOH B 5 52 52 HOH HOH . G 6 HOH B 6 53 53 HOH HOH . G 6 HOH B 7 81 81 HOH HOH . G 6 HOH B 8 85 85 HOH HOH . G 6 HOH B 9 98 98 HOH HOH . G 6 HOH B 10 108 108 HOH HOH . G 6 HOH B 11 111 111 HOH HOH . G 6 HOH B 12 114 114 HOH HOH . G 6 HOH B 13 124 124 HOH HOH . G 6 HOH B 14 127 127 HOH HOH . G 6 HOH B 15 130 130 HOH HOH . G 6 HOH B 16 159 159 HOH HOH . G 6 HOH B 17 160 160 HOH HOH . G 6 HOH B 18 169 169 HOH HOH . G 6 HOH B 19 173 173 HOH HOH . G 6 HOH B 20 182 182 HOH HOH . G 6 HOH B 21 201 201 HOH HOH . G 6 HOH B 22 217 217 HOH HOH . G 6 HOH B 23 231 231 HOH HOH . G 6 HOH B 24 232 232 HOH HOH . G 6 HOH B 25 253 253 HOH HOH . G 6 HOH B 26 270 270 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.086 _atom_site.Cartn_y 19.604 _atom_site.Cartn_z 4.914 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #