data_3GJ4
#
_model_server_result.job_id            rJFj6gsrhIIp-BA2h8LvxA 
_model_server_result.datetime_utc      '2025-03-13 17:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gj4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":300}' 
#
_entry.id    3GJ4 
#
_exptl.entry_id    3GJ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.01 
_cell.angle_gamma         90 
_cell.entry_id            3GJ4 
_cell.length_a            68.422 
_cell.length_b            61.567 
_cell.length_c            72.062 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GJ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 29 A THR 24 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 K O HOH . A HOH 218 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc3 K O HOH . A HOH 219 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc4 K O HOH . A HOH 220 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc5 K O HOH . A HOH 221 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc6 E MG MG . A MG 301 1_555 F O1B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc7 G ZN ZN . B ZN 300 1_555 B SG CYS 11 B CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc8 G ZN ZN . B ZN 300 1_555 B SG CYS 14 B CYS 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc9 G ZN ZN . B ZN 300 1_555 B SG CYS 25 B CYS 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc10 G ZN ZN . B ZN 300 1_555 B SG CYS 28 B CYS 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc11 C OG1 THR 29 C THR 24 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc12 M O HOH . C HOH 217 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc13 M O HOH . C HOH 219 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc14 M O HOH . C HOH 221 1_555 H MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc15 H MG MG . C MG 301 1_555 I O1B GDP . C GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc16 H MG MG . C MG 301 1_555 M O HOH . C HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc17 J ZN ZN . D ZN 300 1_555 D SG CYS 11 D CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc18 J ZN ZN . D ZN 300 1_555 D SG CYS 14 D CYS 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc19 J ZN ZN . D ZN 300 1_555 D SG CYS 25 D CYS 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc20 J ZN ZN . D ZN 300 1_555 D SG CYS 28 D CYS 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3GJ4 
_atom_sites.fract_transf_matrix[1][1]    0.014615 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005322 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 301 301 MG MG . 
F 4 GDP A 1 302 302 GDP GDP . 
G 5 ZN B 1 300 300 ZN ZN . 
H 3 MG C 1 301 301 MG MG . 
I 4 GDP C 1 302 302 GDP GDP . 
J 5 ZN D 1 300 300 ZN ZN . 
K 6 HOH A 1 218 218 HOH HOH . 
K 6 HOH A 2 219 219 HOH HOH . 
K 6 HOH A 3 220 220 HOH HOH . 
K 6 HOH A 4 221 221 HOH HOH . 
K 6 HOH A 5 222 222 HOH HOH . 
K 6 HOH A 6 223 223 HOH HOH . 
K 6 HOH A 7 224 224 HOH HOH . 
K 6 HOH A 8 225 225 HOH HOH . 
K 6 HOH A 9 226 226 HOH HOH . 
K 6 HOH A 10 227 227 HOH HOH . 
K 6 HOH A 11 228 228 HOH HOH . 
K 6 HOH A 12 229 229 HOH HOH . 
K 6 HOH A 13 230 230 HOH HOH . 
K 6 HOH A 14 231 231 HOH HOH . 
K 6 HOH A 15 232 232 HOH HOH . 
K 6 HOH A 16 233 233 HOH HOH . 
K 6 HOH A 17 234 234 HOH HOH . 
K 6 HOH A 18 236 236 HOH HOH . 
K 6 HOH A 19 237 237 HOH HOH . 
K 6 HOH A 20 239 239 HOH HOH . 
K 6 HOH A 21 240 240 HOH HOH . 
K 6 HOH A 22 241 241 HOH HOH . 
K 6 HOH A 23 242 242 HOH HOH . 
K 6 HOH A 24 243 243 HOH HOH . 
K 6 HOH A 25 244 244 HOH HOH . 
K 6 HOH A 26 245 245 HOH HOH . 
K 6 HOH A 27 246 246 HOH HOH . 
K 6 HOH A 28 247 247 HOH HOH . 
K 6 HOH A 29 248 248 HOH HOH . 
K 6 HOH A 30 249 249 HOH HOH . 
K 6 HOH A 31 250 250 HOH HOH . 
K 6 HOH A 32 251 251 HOH HOH . 
K 6 HOH A 33 252 252 HOH HOH . 
K 6 HOH A 34 253 253 HOH HOH . 
K 6 HOH A 35 254 254 HOH HOH . 
K 6 HOH A 36 255 255 HOH HOH . 
K 6 HOH A 37 256 256 HOH HOH . 
K 6 HOH A 38 257 257 HOH HOH . 
K 6 HOH A 39 258 258 HOH HOH . 
K 6 HOH A 40 259 259 HOH HOH . 
K 6 HOH A 41 260 260 HOH HOH . 
K 6 HOH A 42 261 261 HOH HOH . 
K 6 HOH A 43 262 262 HOH HOH . 
K 6 HOH A 44 263 263 HOH HOH . 
K 6 HOH A 45 264 264 HOH HOH . 
K 6 HOH A 46 265 265 HOH HOH . 
K 6 HOH A 47 266 266 HOH HOH . 
K 6 HOH A 48 267 267 HOH HOH . 
K 6 HOH A 49 268 268 HOH HOH . 
K 6 HOH A 50 269 269 HOH HOH . 
K 6 HOH A 51 270 270 HOH HOH . 
K 6 HOH A 52 271 271 HOH HOH . 
K 6 HOH A 53 272 272 HOH HOH . 
K 6 HOH A 54 273 273 HOH HOH . 
K 6 HOH A 55 274 274 HOH HOH . 
K 6 HOH A 56 275 275 HOH HOH . 
K 6 HOH A 57 276 276 HOH HOH . 
K 6 HOH A 58 277 277 HOH HOH . 
K 6 HOH A 59 278 278 HOH HOH . 
K 6 HOH A 60 279 279 HOH HOH . 
K 6 HOH A 61 280 280 HOH HOH . 
K 6 HOH A 62 281 281 HOH HOH . 
K 6 HOH A 63 282 282 HOH HOH . 
K 6 HOH A 64 283 283 HOH HOH . 
K 6 HOH A 65 284 284 HOH HOH . 
K 6 HOH A 66 285 285 HOH HOH . 
K 6 HOH A 67 286 286 HOH HOH . 
K 6 HOH A 68 287 287 HOH HOH . 
K 6 HOH A 69 288 288 HOH HOH . 
K 6 HOH A 70 289 289 HOH HOH . 
K 6 HOH A 71 290 290 HOH HOH . 
K 6 HOH A 72 291 291 HOH HOH . 
K 6 HOH A 73 292 292 HOH HOH . 
K 6 HOH A 74 293 293 HOH HOH . 
K 6 HOH A 75 294 294 HOH HOH . 
K 6 HOH A 76 295 295 HOH HOH . 
K 6 HOH A 77 296 296 HOH HOH . 
K 6 HOH A 78 297 297 HOH HOH . 
K 6 HOH A 79 298 298 HOH HOH . 
K 6 HOH A 80 299 299 HOH HOH . 
K 6 HOH A 81 300 300 HOH HOH . 
K 6 HOH A 82 303 303 HOH HOH . 
K 6 HOH A 83 304 304 HOH HOH . 
K 6 HOH A 84 305 305 HOH HOH . 
K 6 HOH A 85 306 306 HOH HOH . 
K 6 HOH A 86 307 307 HOH HOH . 
K 6 HOH A 87 308 308 HOH HOH . 
K 6 HOH A 88 309 309 HOH HOH . 
K 6 HOH A 89 310 310 HOH HOH . 
K 6 HOH A 90 311 311 HOH HOH . 
K 6 HOH A 91 312 312 HOH HOH . 
K 6 HOH A 92 313 313 HOH HOH . 
K 6 HOH A 93 314 314 HOH HOH . 
K 6 HOH A 94 315 315 HOH HOH . 
K 6 HOH A 95 317 317 HOH HOH . 
K 6 HOH A 96 319 319 HOH HOH . 
K 6 HOH A 97 321 321 HOH HOH . 
L 6 HOH B 1 14 14 HOH HOH . 
L 6 HOH B 2 104 104 HOH HOH . 
L 6 HOH B 3 144 144 HOH HOH . 
L 6 HOH B 4 160 160 HOH HOH . 
L 6 HOH B 5 167 167 HOH HOH . 
L 6 HOH B 6 201 201 HOH HOH . 
M 6 HOH C 1 217 217 HOH HOH . 
M 6 HOH C 2 218 218 HOH HOH . 
M 6 HOH C 3 219 219 HOH HOH . 
M 6 HOH C 4 220 51 HOH HOH . 
M 6 HOH C 5 221 221 HOH HOH . 
M 6 HOH C 6 222 222 HOH HOH . 
M 6 HOH C 7 223 223 HOH HOH . 
M 6 HOH C 8 224 224 HOH HOH . 
M 6 HOH C 9 225 225 HOH HOH . 
M 6 HOH C 10 226 226 HOH HOH . 
M 6 HOH C 11 227 227 HOH HOH . 
M 6 HOH C 12 228 228 HOH HOH . 
M 6 HOH C 13 229 229 HOH HOH . 
M 6 HOH C 14 230 230 HOH HOH . 
M 6 HOH C 15 232 232 HOH HOH . 
M 6 HOH C 16 233 233 HOH HOH . 
M 6 HOH C 17 234 234 HOH HOH . 
M 6 HOH C 18 235 235 HOH HOH . 
M 6 HOH C 19 236 236 HOH HOH . 
M 6 HOH C 20 237 237 HOH HOH . 
M 6 HOH C 21 238 238 HOH HOH . 
M 6 HOH C 22 239 239 HOH HOH . 
M 6 HOH C 23 241 241 HOH HOH . 
M 6 HOH C 24 243 243 HOH HOH . 
M 6 HOH C 25 244 244 HOH HOH . 
M 6 HOH C 26 245 245 HOH HOH . 
M 6 HOH C 27 246 246 HOH HOH . 
M 6 HOH C 28 247 247 HOH HOH . 
M 6 HOH C 29 248 248 HOH HOH . 
M 6 HOH C 30 249 249 HOH HOH . 
M 6 HOH C 31 250 250 HOH HOH . 
M 6 HOH C 32 251 251 HOH HOH . 
M 6 HOH C 33 252 252 HOH HOH . 
M 6 HOH C 34 253 253 HOH HOH . 
M 6 HOH C 35 254 254 HOH HOH . 
M 6 HOH C 36 255 255 HOH HOH . 
M 6 HOH C 37 256 256 HOH HOH . 
M 6 HOH C 38 257 257 HOH HOH . 
M 6 HOH C 39 258 258 HOH HOH . 
M 6 HOH C 40 259 259 HOH HOH . 
M 6 HOH C 41 260 260 HOH HOH . 
M 6 HOH C 42 261 261 HOH HOH . 
M 6 HOH C 43 262 262 HOH HOH . 
M 6 HOH C 44 263 263 HOH HOH . 
M 6 HOH C 45 264 264 HOH HOH . 
M 6 HOH C 46 265 265 HOH HOH . 
M 6 HOH C 47 266 266 HOH HOH . 
M 6 HOH C 48 267 267 HOH HOH . 
M 6 HOH C 49 268 268 HOH HOH . 
M 6 HOH C 50 269 269 HOH HOH . 
M 6 HOH C 51 270 270 HOH HOH . 
M 6 HOH C 52 271 271 HOH HOH . 
M 6 HOH C 53 272 272 HOH HOH . 
M 6 HOH C 54 273 273 HOH HOH . 
M 6 HOH C 55 274 274 HOH HOH . 
M 6 HOH C 56 275 275 HOH HOH . 
M 6 HOH C 57 276 276 HOH HOH . 
M 6 HOH C 58 277 277 HOH HOH . 
M 6 HOH C 59 278 278 HOH HOH . 
M 6 HOH C 60 279 279 HOH HOH . 
M 6 HOH C 61 280 280 HOH HOH . 
M 6 HOH C 62 281 281 HOH HOH . 
M 6 HOH C 63 282 282 HOH HOH . 
M 6 HOH C 64 283 283 HOH HOH . 
M 6 HOH C 65 284 284 HOH HOH . 
M 6 HOH C 66 285 285 HOH HOH . 
M 6 HOH C 67 286 286 HOH HOH . 
M 6 HOH C 68 287 287 HOH HOH . 
M 6 HOH C 69 288 288 HOH HOH . 
M 6 HOH C 70 289 289 HOH HOH . 
M 6 HOH C 71 290 290 HOH HOH . 
M 6 HOH C 72 291 291 HOH HOH . 
M 6 HOH C 73 292 292 HOH HOH . 
M 6 HOH C 74 293 293 HOH HOH . 
M 6 HOH C 75 294 294 HOH HOH . 
M 6 HOH C 76 295 295 HOH HOH . 
M 6 HOH C 77 296 296 HOH HOH . 
M 6 HOH C 78 297 297 HOH HOH . 
M 6 HOH C 79 298 298 HOH HOH . 
M 6 HOH C 80 299 299 HOH HOH . 
M 6 HOH C 81 300 300 HOH HOH . 
M 6 HOH C 82 303 303 HOH HOH . 
M 6 HOH C 83 304 304 HOH HOH . 
M 6 HOH C 84 305 305 HOH HOH . 
M 6 HOH C 85 306 306 HOH HOH . 
M 6 HOH C 86 307 307 HOH HOH . 
M 6 HOH C 87 308 308 HOH HOH . 
M 6 HOH C 88 309 309 HOH HOH . 
M 6 HOH C 89 310 310 HOH HOH . 
M 6 HOH C 90 311 311 HOH HOH . 
M 6 HOH C 91 312 312 HOH HOH . 
M 6 HOH C 92 313 313 HOH HOH . 
M 6 HOH C 93 315 315 HOH HOH . 
M 6 HOH C 94 316 316 HOH HOH . 
M 6 HOH C 95 317 317 HOH HOH . 
M 6 HOH C 96 318 318 HOH HOH . 
M 6 HOH C 97 319 319 HOH HOH . 
M 6 HOH C 98 320 320 HOH HOH . 
N 6 HOH D 1 16 16 HOH HOH . 
N 6 HOH D 2 22 22 HOH HOH . 
N 6 HOH D 3 179 179 HOH HOH . 
N 6 HOH D 4 195 195 HOH HOH . 
N 6 HOH D 5 221 221 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               46.584 
_atom_site.Cartn_y               -1.159 
_atom_site.Cartn_z               -2.437 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#