data_3GJB # _model_server_result.job_id xXsS55h79oU1uLo-yuUorQ _model_server_result.datetime_utc '2024-11-07 12:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":325}' # _entry.id 3GJB # _exptl.entry_id 3GJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GJB _cell.length_a 88.988 _cell.length_b 88.988 _cell.length_c 248.442 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,R 1 1 B,J,K,L,M,N,O,P,Q,S 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -124.221 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 118 A HIS 118 1_555 C FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A NE2 HIS 240 A HIS 240 1_555 C FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 C FE FE2 . A FE2 320 1_555 D O2 AKG . A AKG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc4 C FE FE2 . A FE2 320 1_555 D O5 AKG . A AKG 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc5 C FE FE2 . A FE2 320 1_555 R O HOH . A HOH 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 C FE FE2 . A FE2 320 1_555 R O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B NE2 HIS 118 B HIS 118 1_555 J FE FE2 . B FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 B NE2 HIS 240 B HIS 240 1_555 J FE FE2 . B FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 J FE FE2 . B FE2 320 1_555 S O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc10 J FE FE2 . B FE2 320 1_555 S O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc11 J FE FE2 . B FE2 320 1_555 S O HOH . B HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc12 J FE FE2 . B FE2 320 1_555 S O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3GJB _atom_sites.fract_transf_matrix[1][1] 0.011237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 320 320 FE2 FE2 . D 3 AKG A 1 321 321 AKG AKG . E 3 AKG A 1 322 322 AKG AKG . F 4 ACT A 1 323 323 ACT ACT . G 4 ACT A 1 324 324 ACT ACT . H 4 ACT A 1 325 325 ACT ACT . I 5 SO4 A 1 326 326 SO4 SO4 . J 2 FE2 B 1 320 320 FE2 FE2 . K 3 AKG B 1 321 321 AKG AKG . L 4 ACT B 1 322 322 ACT ACT . M 4 ACT B 1 323 323 ACT ACT . N 4 ACT B 1 324 324 ACT ACT . O 4 ACT B 1 325 325 ACT ACT . P 4 ACT B 1 326 326 ACT ACT . Q 5 SO4 B 1 327 327 SO4 SO4 . R 6 HOH A 1 327 327 HOH HOH . R 6 HOH A 2 328 328 HOH HOH . R 6 HOH A 3 329 329 HOH HOH . R 6 HOH A 4 330 330 HOH HOH . R 6 HOH A 5 331 331 HOH HOH . R 6 HOH A 6 332 332 HOH HOH . R 6 HOH A 7 333 333 HOH HOH . R 6 HOH A 8 334 334 HOH HOH . R 6 HOH A 9 335 335 HOH HOH . R 6 HOH A 10 336 336 HOH HOH . R 6 HOH A 11 337 337 HOH HOH . R 6 HOH A 12 338 338 HOH HOH . R 6 HOH A 13 339 339 HOH HOH . R 6 HOH A 14 340 340 HOH HOH . R 6 HOH A 15 341 341 HOH HOH . R 6 HOH A 16 342 342 HOH HOH . R 6 HOH A 17 343 343 HOH HOH . R 6 HOH A 18 344 344 HOH HOH . R 6 HOH A 19 345 345 HOH HOH . R 6 HOH A 20 346 346 HOH HOH . R 6 HOH A 21 347 347 HOH HOH . R 6 HOH A 22 348 348 HOH HOH . R 6 HOH A 23 349 349 HOH HOH . R 6 HOH A 24 350 350 HOH HOH . R 6 HOH A 25 351 351 HOH HOH . R 6 HOH A 26 352 352 HOH HOH . R 6 HOH A 27 353 353 HOH HOH . R 6 HOH A 28 354 354 HOH HOH . R 6 HOH A 29 355 355 HOH HOH . R 6 HOH A 30 356 356 HOH HOH . R 6 HOH A 31 357 357 HOH HOH . R 6 HOH A 32 358 358 HOH HOH . R 6 HOH A 33 359 359 HOH HOH . R 6 HOH A 34 360 360 HOH HOH . R 6 HOH A 35 361 361 HOH HOH . R 6 HOH A 36 362 362 HOH HOH . R 6 HOH A 37 363 363 HOH HOH . R 6 HOH A 38 364 364 HOH HOH . R 6 HOH A 39 365 365 HOH HOH . R 6 HOH A 40 366 366 HOH HOH . R 6 HOH A 41 367 367 HOH HOH . R 6 HOH A 42 368 368 HOH HOH . R 6 HOH A 43 369 369 HOH HOH . R 6 HOH A 44 370 370 HOH HOH . R 6 HOH A 45 371 371 HOH HOH . R 6 HOH A 46 372 372 HOH HOH . R 6 HOH A 47 373 373 HOH HOH . R 6 HOH A 48 374 374 HOH HOH . R 6 HOH A 49 375 375 HOH HOH . R 6 HOH A 50 376 376 HOH HOH . R 6 HOH A 51 377 377 HOH HOH . R 6 HOH A 52 378 378 HOH HOH . R 6 HOH A 53 379 379 HOH HOH . R 6 HOH A 54 380 380 HOH HOH . R 6 HOH A 55 381 381 HOH HOH . R 6 HOH A 56 382 382 HOH HOH . R 6 HOH A 57 383 383 HOH HOH . R 6 HOH A 58 384 384 HOH HOH . R 6 HOH A 59 385 385 HOH HOH . R 6 HOH A 60 386 386 HOH HOH . R 6 HOH A 61 387 387 HOH HOH . R 6 HOH A 62 388 388 HOH HOH . R 6 HOH A 63 389 389 HOH HOH . R 6 HOH A 64 390 390 HOH HOH . R 6 HOH A 65 391 391 HOH HOH . R 6 HOH A 66 392 392 HOH HOH . R 6 HOH A 67 393 393 HOH HOH . R 6 HOH A 68 394 394 HOH HOH . R 6 HOH A 69 395 395 HOH HOH . R 6 HOH A 70 396 396 HOH HOH . R 6 HOH A 71 397 397 HOH HOH . R 6 HOH A 72 398 398 HOH HOH . R 6 HOH A 73 399 399 HOH HOH . R 6 HOH A 74 400 400 HOH HOH . R 6 HOH A 75 401 401 HOH HOH . R 6 HOH A 76 402 402 HOH HOH . R 6 HOH A 77 403 403 HOH HOH . R 6 HOH A 78 404 404 HOH HOH . R 6 HOH A 79 405 405 HOH HOH . R 6 HOH A 80 406 406 HOH HOH . R 6 HOH A 81 407 407 HOH HOH . R 6 HOH A 82 408 408 HOH HOH . R 6 HOH A 83 409 409 HOH HOH . R 6 HOH A 84 410 410 HOH HOH . R 6 HOH A 85 411 411 HOH HOH . R 6 HOH A 86 412 412 HOH HOH . R 6 HOH A 87 413 413 HOH HOH . R 6 HOH A 88 414 414 HOH HOH . R 6 HOH A 89 415 415 HOH HOH . R 6 HOH A 90 416 416 HOH HOH . R 6 HOH A 91 417 417 HOH HOH . R 6 HOH A 92 418 418 HOH HOH . R 6 HOH A 93 419 419 HOH HOH . R 6 HOH A 94 420 420 HOH HOH . R 6 HOH A 95 421 421 HOH HOH . R 6 HOH A 96 422 422 HOH HOH . R 6 HOH A 97 423 423 HOH HOH . R 6 HOH A 98 424 424 HOH HOH . R 6 HOH A 99 425 425 HOH HOH . R 6 HOH A 100 426 426 HOH HOH . R 6 HOH A 101 427 427 HOH HOH . R 6 HOH A 102 428 428 HOH HOH . R 6 HOH A 103 429 429 HOH HOH . R 6 HOH A 104 430 430 HOH HOH . R 6 HOH A 105 431 431 HOH HOH . R 6 HOH A 106 432 432 HOH HOH . R 6 HOH A 107 433 433 HOH HOH . R 6 HOH A 108 434 434 HOH HOH . R 6 HOH A 109 435 435 HOH HOH . R 6 HOH A 110 436 436 HOH HOH . S 6 HOH B 1 328 328 HOH HOH . S 6 HOH B 2 329 329 HOH HOH . S 6 HOH B 3 330 330 HOH HOH . S 6 HOH B 4 331 331 HOH HOH . S 6 HOH B 5 332 332 HOH HOH . S 6 HOH B 6 333 333 HOH HOH . S 6 HOH B 7 334 334 HOH HOH . S 6 HOH B 8 335 335 HOH HOH . S 6 HOH B 9 336 336 HOH HOH . S 6 HOH B 10 337 337 HOH HOH . S 6 HOH B 11 338 338 HOH HOH . S 6 HOH B 12 339 339 HOH HOH . S 6 HOH B 13 340 340 HOH HOH . S 6 HOH B 14 341 341 HOH HOH . S 6 HOH B 15 342 342 HOH HOH . S 6 HOH B 16 343 343 HOH HOH . S 6 HOH B 17 344 344 HOH HOH . S 6 HOH B 18 345 345 HOH HOH . S 6 HOH B 19 346 346 HOH HOH . S 6 HOH B 20 347 347 HOH HOH . S 6 HOH B 21 348 348 HOH HOH . S 6 HOH B 22 349 349 HOH HOH . S 6 HOH B 23 350 350 HOH HOH . S 6 HOH B 24 351 351 HOH HOH . S 6 HOH B 25 352 352 HOH HOH . S 6 HOH B 26 353 353 HOH HOH . S 6 HOH B 27 354 354 HOH HOH . S 6 HOH B 28 355 355 HOH HOH . S 6 HOH B 29 356 356 HOH HOH . S 6 HOH B 30 357 357 HOH HOH . S 6 HOH B 31 358 358 HOH HOH . S 6 HOH B 32 359 359 HOH HOH . S 6 HOH B 33 360 360 HOH HOH . S 6 HOH B 34 361 361 HOH HOH . S 6 HOH B 35 362 362 HOH HOH . S 6 HOH B 36 363 363 HOH HOH . S 6 HOH B 37 364 364 HOH HOH . S 6 HOH B 38 365 365 HOH HOH . S 6 HOH B 39 366 366 HOH HOH . S 6 HOH B 40 367 367 HOH HOH . S 6 HOH B 41 368 368 HOH HOH . S 6 HOH B 42 369 369 HOH HOH . S 6 HOH B 43 370 370 HOH HOH . S 6 HOH B 44 371 371 HOH HOH . S 6 HOH B 45 372 372 HOH HOH . S 6 HOH B 46 373 373 HOH HOH . S 6 HOH B 47 374 374 HOH HOH . S 6 HOH B 48 375 375 HOH HOH . S 6 HOH B 49 376 376 HOH HOH . S 6 HOH B 50 377 377 HOH HOH . S 6 HOH B 51 378 378 HOH HOH . S 6 HOH B 52 379 379 HOH HOH . S 6 HOH B 53 380 380 HOH HOH . S 6 HOH B 54 381 381 HOH HOH . S 6 HOH B 55 382 382 HOH HOH . S 6 HOH B 56 383 383 HOH HOH . S 6 HOH B 57 384 384 HOH HOH . S 6 HOH B 58 385 385 HOH HOH . S 6 HOH B 59 386 386 HOH HOH . S 6 HOH B 60 387 387 HOH HOH . S 6 HOH B 61 388 388 HOH HOH . S 6 HOH B 62 389 389 HOH HOH . S 6 HOH B 63 390 390 HOH HOH . S 6 HOH B 64 391 391 HOH HOH . S 6 HOH B 65 392 392 HOH HOH . S 6 HOH B 66 393 393 HOH HOH . S 6 HOH B 67 394 394 HOH HOH . S 6 HOH B 68 395 395 HOH HOH . S 6 HOH B 69 396 396 HOH HOH . S 6 HOH B 70 397 397 HOH HOH . S 6 HOH B 71 398 398 HOH HOH . S 6 HOH B 72 399 399 HOH HOH . S 6 HOH B 73 400 400 HOH HOH . S 6 HOH B 74 401 401 HOH HOH . S 6 HOH B 75 402 402 HOH HOH . S 6 HOH B 76 403 403 HOH HOH . S 6 HOH B 77 404 404 HOH HOH . S 6 HOH B 78 405 405 HOH HOH . S 6 HOH B 79 406 406 HOH HOH . S 6 HOH B 80 407 407 HOH HOH . S 6 HOH B 81 408 408 HOH HOH . S 6 HOH B 82 409 409 HOH HOH . S 6 HOH B 83 410 410 HOH HOH . S 6 HOH B 84 411 411 HOH HOH . S 6 HOH B 85 412 412 HOH HOH . S 6 HOH B 86 413 413 HOH HOH . S 6 HOH B 87 414 414 HOH HOH . S 6 HOH B 88 415 415 HOH HOH . S 6 HOH B 89 416 416 HOH HOH . S 6 HOH B 90 417 417 HOH HOH . S 6 HOH B 91 418 418 HOH HOH . S 6 HOH B 92 419 419 HOH HOH . S 6 HOH B 93 420 420 HOH HOH . S 6 HOH B 94 421 421 HOH HOH . S 6 HOH B 95 422 422 HOH HOH . S 6 HOH B 96 423 423 HOH HOH . S 6 HOH B 97 424 424 HOH HOH . S 6 HOH B 98 425 425 HOH HOH . S 6 HOH B 99 426 426 HOH HOH . S 6 HOH B 100 427 427 HOH HOH . S 6 HOH B 101 428 428 HOH HOH . S 6 HOH B 102 429 429 HOH HOH . S 6 HOH B 103 430 430 HOH HOH . S 6 HOH B 104 431 431 HOH HOH . S 6 HOH B 105 432 432 HOH HOH . S 6 HOH B 106 433 433 HOH HOH . S 6 HOH B 107 434 434 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . O 4 -3.209 -24.607 -56.562 1 72.06 ? C ACT 325 B 1 HETATM 2 O O ACT . . . O 4 -2.111 -24.776 -57.049 1 71.48 ? O ACT 325 B 1 HETATM 3 O OXT ACT . . . O 4 -3.644 -23.357 -56.311 1 72.19 ? OXT ACT 325 B 1 HETATM 4 C CH3 ACT . . . O 4 -4.075 -25.783 -56.238 1 69.76 ? CH3 ACT 325 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #