data_3GJC
#
_model_server_result.job_id            HypOnSaVxWqQL5tD8DNdkg 
_model_server_result.datetime_utc      '2024-11-09 02:10:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gjc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":515}' 
#
_entry.id    3GJC 
#
_exptl.entry_id    3GJC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              131.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LEUCINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.22 
_cell.angle_gamma         90 
_cell.entry_id            3GJC 
_cell.length_a            83.79 
_cell.length_b            93.51 
_cell.length_c            87.46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GJC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc3 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc4 A OG SER 355 A SER 355 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc5 B O GLY 20 B GLY 20 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc6 B O VAL 23 B VAL 23 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc7 B O ALA 351 B ALA 351 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc8 B OG1 THR 354 B THR 354 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
#
_chem_comp.formula           'C6 H13 N O2' 
_chem_comp.formula_weight    131.173 
_chem_comp.id                LEU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LEUCINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LEU sing 208 n n 
N H LEU sing 209 n n 
N H2 LEU sing 210 n n 
CA C LEU sing 211 n n 
CA CB LEU sing 212 n n 
CA HA LEU sing 213 n n 
C O LEU doub 214 n n 
C OXT LEU sing 215 n n 
CB CG LEU sing 216 n n 
CB HB2 LEU sing 217 n n 
CB HB3 LEU sing 218 n n 
CG CD1 LEU sing 219 n n 
CG CD2 LEU sing 220 n n 
CG HG LEU sing 221 n n 
CD1 HD11 LEU sing 222 n n 
CD1 HD12 LEU sing 223 n n 
CD1 HD13 LEU sing 224 n n 
CD2 HD21 LEU sing 225 n n 
CD2 HD22 LEU sing 226 n n 
CD2 HD23 LEU sing 227 n n 
OXT HXT LEU sing 228 n n 
#
_atom_sites.entry_id                     3GJC 
_atom_sites.fract_transf_matrix[1][1]    0.011935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000881 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010694 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 514 1 NA NA . 
D 3 LEU A 1 515 2 LEU LEU . 
E 4 BOG A 1 701 701 BOG BOG . 
F 4 BOG A 1 702 702 BOG BOG . 
G 4 BOG A 1 704 704 BOG BOG . 
H 4 BOG A 1 703 703 BOG BOG . 
I 4 BOG B 1 703 703 BOG BOG . 
J 2 NA B 1 514 1 NA NA . 
K 3 LEU B 1 515 2 LEU LEU . 
L 4 BOG B 1 701 701 BOG BOG . 
M 4 BOG B 1 702 702 BOG BOG . 
N 4 BOG B 1 704 704 BOG BOG . 
O 5 HOH A 1 516 2 HOH HOH . 
O 5 HOH A 2 517 3 HOH HOH . 
O 5 HOH A 3 518 4 HOH HOH . 
O 5 HOH A 4 519 5 HOH HOH . 
O 5 HOH A 5 520 6 HOH HOH . 
O 5 HOH A 6 521 7 HOH HOH . 
O 5 HOH A 7 522 8 HOH HOH . 
O 5 HOH A 8 523 11 HOH HOH . 
O 5 HOH A 9 524 15 HOH HOH . 
O 5 HOH A 10 525 17 HOH HOH . 
O 5 HOH A 11 526 18 HOH HOH . 
O 5 HOH A 12 527 19 HOH HOH . 
O 5 HOH A 13 528 22 HOH HOH . 
O 5 HOH A 14 529 24 HOH HOH . 
O 5 HOH A 15 530 25 HOH HOH . 
O 5 HOH A 16 531 26 HOH HOH . 
O 5 HOH A 17 532 28 HOH HOH . 
O 5 HOH A 18 533 30 HOH HOH . 
O 5 HOH A 19 534 31 HOH HOH . 
O 5 HOH A 20 535 34 HOH HOH . 
P 5 HOH B 1 516 1 HOH HOH . 
P 5 HOH B 2 517 10 HOH HOH . 
P 5 HOH B 3 518 12 HOH HOH . 
P 5 HOH B 4 519 14 HOH HOH . 
P 5 HOH B 5 520 16 HOH HOH . 
P 5 HOH B 6 521 20 HOH HOH . 
P 5 HOH B 7 522 21 HOH HOH . 
P 5 HOH B 8 523 23 HOH HOH . 
P 5 HOH B 9 524 27 HOH HOH . 
P 5 HOH B 10 525 29 HOH HOH . 
P 5 HOH B 11 526 32 HOH HOH . 
P 5 HOH B 12 527 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LEU . . . D 3 21.314 12.196 -6.94 1 41.01 ? N LEU 515 A 1 
HETATM 2 C CA LEU . . . D 3 21.315 13.054 -8.118 1 17.05 ? CA LEU 515 A 1 
HETATM 3 C C LEU . . . D 3 21.975 14.378 -7.794 1 30.2 ? C LEU 515 A 1 
HETATM 4 O O LEU . . . D 3 22.217 15.193 -8.684 1 57.85 ? O LEU 515 A 1 
HETATM 5 C CB LEU . . . D 3 19.889 13.312 -8.604 1 25.45 ? CB LEU 515 A 1 
HETATM 6 C CG LEU . . . D 3 18.97 12.114 -8.83 1 37.53 ? CG LEU 515 A 1 
HETATM 7 C CD1 LEU . . . D 3 17.659 12.596 -9.417 1 26.16 ? CD1 LEU 515 A 1 
HETATM 8 C CD2 LEU . . . D 3 19.644 11.104 -9.744 1 83.45 ? CD2 LEU 515 A 1 
HETATM 9 O OXT LEU . . . D 3 22.267 14.656 -6.633 1 42.54 ? OXT LEU 515 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#