data_3GJC
#
_model_server_result.job_id            S5A4A4apaso0_sDLhvtXnA 
_model_server_result.datetime_utc      '2024-11-09 02:17:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gjc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":701}' 
#
_entry.id    3GJC 
#
_exptl.entry_id    3GJC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.22 
_cell.angle_gamma         90 
_cell.entry_id            3GJC 
_cell.length_a            83.79 
_cell.length_b            93.51 
_cell.length_c            87.46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GJC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A O VAL 23 A VAL 23 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc3 A O ALA 351 A ALA 351 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc4 A OG SER 355 A SER 355 1_555 C NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc5 B O GLY 20 B GLY 20 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc6 B O VAL 23 B VAL 23 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc7 B O ALA 351 B ALA 351 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc8 B OG1 THR 354 B THR 354 1_555 J NA NA . B NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 70 n n 
C1 C2 BOG sing 71 n n 
C1 O5 BOG sing 72 n n 
C1 H1 BOG sing 73 n n 
O1 C1' BOG sing 74 n n 
C2 O2 BOG sing 75 n n 
C2 C3 BOG sing 76 n n 
C2 H2 BOG sing 77 n n 
O2 HO2 BOG sing 78 n n 
C3 O3 BOG sing 79 n n 
C3 C4 BOG sing 80 n n 
C3 H3 BOG sing 81 n n 
O3 HO3 BOG sing 82 n n 
C4 O4 BOG sing 83 n n 
C4 C5 BOG sing 84 n n 
C4 H4 BOG sing 85 n n 
O4 HO4 BOG sing 86 n n 
C5 O5 BOG sing 87 n n 
C5 C6 BOG sing 88 n n 
C5 H5 BOG sing 89 n n 
C6 O6 BOG sing 90 n n 
C6 H61 BOG sing 91 n n 
C6 H62 BOG sing 92 n n 
O6 HO6 BOG sing 93 n n 
C1' C2' BOG sing 94 n n 
C1' "H1'1" BOG sing 95 n n 
C1' "H1'2" BOG sing 96 n n 
C2' C3' BOG sing 97 n n 
C2' "H2'1" BOG sing 98 n n 
C2' "H2'2" BOG sing 99 n n 
C3' C4' BOG sing 100 n n 
C3' "H3'1" BOG sing 101 n n 
C3' "H3'2" BOG sing 102 n n 
C4' C5' BOG sing 103 n n 
C4' "H4'1" BOG sing 104 n n 
C4' "H4'2" BOG sing 105 n n 
C5' C6' BOG sing 106 n n 
C5' "H5'1" BOG sing 107 n n 
C5' "H5'2" BOG sing 108 n n 
C6' C7' BOG sing 109 n n 
C6' "H6'1" BOG sing 110 n n 
C6' "H6'2" BOG sing 111 n n 
C7' C8' BOG sing 112 n n 
C7' "H7'1" BOG sing 113 n n 
C7' "H7'2" BOG sing 114 n n 
C8' "H8'1" BOG sing 115 n n 
C8' "H8'2" BOG sing 116 n n 
C8' "H8'3" BOG sing 117 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3GJC 
_atom_sites.fract_transf_matrix[1][1]    0.011935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000881 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010694 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 514 1 NA NA . 
D 3 LEU A 1 515 2 LEU LEU . 
E 4 BOG A 1 701 701 BOG BOG . 
F 4 BOG A 1 702 702 BOG BOG . 
G 4 BOG A 1 704 704 BOG BOG . 
H 4 BOG A 1 703 703 BOG BOG . 
I 4 BOG B 1 703 703 BOG BOG . 
J 2 NA B 1 514 1 NA NA . 
K 3 LEU B 1 515 2 LEU LEU . 
L 4 BOG B 1 701 701 BOG BOG . 
M 4 BOG B 1 702 702 BOG BOG . 
N 4 BOG B 1 704 704 BOG BOG . 
O 5 HOH A 1 516 2 HOH HOH . 
O 5 HOH A 2 517 3 HOH HOH . 
O 5 HOH A 3 518 4 HOH HOH . 
O 5 HOH A 4 519 5 HOH HOH . 
O 5 HOH A 5 520 6 HOH HOH . 
O 5 HOH A 6 521 7 HOH HOH . 
O 5 HOH A 7 522 8 HOH HOH . 
O 5 HOH A 8 523 11 HOH HOH . 
O 5 HOH A 9 524 15 HOH HOH . 
O 5 HOH A 10 525 17 HOH HOH . 
O 5 HOH A 11 526 18 HOH HOH . 
O 5 HOH A 12 527 19 HOH HOH . 
O 5 HOH A 13 528 22 HOH HOH . 
O 5 HOH A 14 529 24 HOH HOH . 
O 5 HOH A 15 530 25 HOH HOH . 
O 5 HOH A 16 531 26 HOH HOH . 
O 5 HOH A 17 532 28 HOH HOH . 
O 5 HOH A 18 533 30 HOH HOH . 
O 5 HOH A 19 534 31 HOH HOH . 
O 5 HOH A 20 535 34 HOH HOH . 
P 5 HOH B 1 516 1 HOH HOH . 
P 5 HOH B 2 517 10 HOH HOH . 
P 5 HOH B 3 518 12 HOH HOH . 
P 5 HOH B 4 519 14 HOH HOH . 
P 5 HOH B 5 520 16 HOH HOH . 
P 5 HOH B 6 521 20 HOH HOH . 
P 5 HOH B 7 522 21 HOH HOH . 
P 5 HOH B 8 523 23 HOH HOH . 
P 5 HOH B 9 524 27 HOH HOH . 
P 5 HOH B 10 525 29 HOH HOH . 
P 5 HOH B 11 526 32 HOH HOH . 
P 5 HOH B 12 527 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . L 4 -28.34 3.66 -62.951 1 157.24 ? C1 BOG 701 B 1 
HETATM 2 O O1 BOG . . . L 4 -27.928 4.829 -62.288 1 145.06 ? O1 BOG 701 B 1 
HETATM 3 C C2 BOG . . . L 4 -28.293 3.885 -64.475 1 152.99 ? C2 BOG 701 B 1 
HETATM 4 O O2 BOG . . . L 4 -29.373 4.711 -64.834 1 145.46 ? O2 BOG 701 B 1 
HETATM 5 C C3 BOG . . . L 4 -28.367 2.587 -65.315 1 144.37 ? C3 BOG 701 B 1 
HETATM 6 O O3 BOG . . . L 4 -27.617 2.794 -66.483 1 113.62 ? O3 BOG 701 B 1 
HETATM 7 C C4 BOG . . . L 4 -27.82 1.313 -64.63 1 151.21 ? C4 BOG 701 B 1 
HETATM 8 O O4 BOG . . . L 4 -28.574 0.214 -65.071 1 117.2 ? O4 BOG 701 B 1 
HETATM 9 C C5 BOG . . . L 4 -27.858 1.325 -63.089 1 168.32 ? C5 BOG 701 B 1 
HETATM 10 O O5 BOG . . . L 4 -27.5 2.586 -62.518 1 170.62 ? O5 BOG 701 B 1 
HETATM 11 C C6 BOG . . . L 4 -26.902 0.25 -62.554 1 169.27 ? C6 BOG 701 B 1 
HETATM 12 O O6 BOG . . . L 4 -25.586 0.736 -62.62 1 170.39 ? O6 BOG 701 B 1 
HETATM 13 C C1' BOG . . . L 4 -27.951 4.842 -60.883 1 117.78 ? C1' BOG 701 B 1 
HETATM 14 C C2' BOG . . . L 4 -27.819 6.282 -60.371 1 79.46 ? C2' BOG 701 B 1 
HETATM 15 C C3' BOG . . . L 4 -26.345 6.622 -60.095 1 35.14 ? C3' BOG 701 B 1 
HETATM 16 C C4' BOG . . . L 4 -26.258 8.109 -59.719 1 59.77 ? C4' BOG 701 B 1 
HETATM 17 C C5' BOG . . . L 4 -25.015 8.369 -58.856 1 72.03 ? C5' BOG 701 B 1 
HETATM 18 C C6' BOG . . . L 4 -23.91 8.99 -59.724 1 78.79 ? C6' BOG 701 B 1 
HETATM 19 C C7' BOG . . . L 4 -22.552 8.801 -59.024 1 112.66 ? C7' BOG 701 B 1 
HETATM 20 C C8' BOG . . . L 4 -21.546 9.787 -59.628 1 127.59 ? C8' BOG 701 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#