data_3GK1 # _model_server_result.job_id 3lsJCsfMfoGHi9Q6PW0t3Q _model_server_result.datetime_utc '2024-12-01 07:13:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":92}' # _entry.id 3GK1 # _exptl.entry_id 3GK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GK1 _cell.length_a 34.666 _cell.length_b 90.778 _cell.length_c 58.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 B CA CA . A CA 92 1_555 F O HOH . A HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 C CA CA . A CA 93 1_555 F O HOH . A HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GK1 _atom_sites.fract_transf_matrix[1][1] 0.028847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 92 90 CA CA . C 2 CA A 1 93 91 CA CA . D 3 32A A 1 94 1 32A 32A . E 4 CAC A 1 95 1 CAC CAC . F 5 HOH A 1 96 1 HOH HOH . F 5 HOH A 2 97 2 HOH HOH . F 5 HOH A 3 98 3 HOH HOH . F 5 HOH A 4 99 4 HOH HOH . F 5 HOH A 5 100 5 HOH HOH . F 5 HOH A 6 101 6 HOH HOH . F 5 HOH A 7 102 7 HOH HOH . F 5 HOH A 8 103 8 HOH HOH . F 5 HOH A 9 104 9 HOH HOH . F 5 HOH A 10 105 10 HOH HOH . F 5 HOH A 11 106 11 HOH HOH . F 5 HOH A 12 107 12 HOH HOH . F 5 HOH A 13 108 13 HOH HOH . F 5 HOH A 14 109 14 HOH HOH . F 5 HOH A 15 110 15 HOH HOH . F 5 HOH A 16 111 16 HOH HOH . F 5 HOH A 17 112 17 HOH HOH . F 5 HOH A 18 113 18 HOH HOH . F 5 HOH A 19 114 19 HOH HOH . F 5 HOH A 20 115 20 HOH HOH . F 5 HOH A 21 116 21 HOH HOH . F 5 HOH A 22 117 22 HOH HOH . F 5 HOH A 23 118 23 HOH HOH . F 5 HOH A 24 119 24 HOH HOH . F 5 HOH A 25 120 25 HOH HOH . F 5 HOH A 26 121 26 HOH HOH . F 5 HOH A 27 122 27 HOH HOH . F 5 HOH A 28 123 28 HOH HOH . F 5 HOH A 29 124 29 HOH HOH . F 5 HOH A 30 125 30 HOH HOH . F 5 HOH A 31 126 31 HOH HOH . F 5 HOH A 32 127 32 HOH HOH . F 5 HOH A 33 128 33 HOH HOH . F 5 HOH A 34 129 34 HOH HOH . F 5 HOH A 35 130 35 HOH HOH . F 5 HOH A 36 131 36 HOH HOH . F 5 HOH A 37 132 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.052 _atom_site.Cartn_y 17.409 _atom_site.Cartn_z -10.516 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 92 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #