data_3GK1 # _model_server_result.job_id tNz3yQZ26zCvVn0nzFUjUg _model_server_result.datetime_utc '2024-11-04 23:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":94}' # _entry.id 3GK1 # _exptl.entry_id 3GK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.358 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(5-hex-1-yn-1-ylfuran-2-yl)carbonyl]-N-methylhydrazinecarbothioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GK1 _cell.length_a 34.666 _cell.length_b 90.778 _cell.length_c 58.994 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc13 B CA CA . A CA 92 1_555 F O HOH . A HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc14 C CA CA . A CA 93 1_555 F O HOH . A HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C13 H17 N3 O2 S' _chem_comp.formula_weight 279.358 _chem_comp.id 32A _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(5-hex-1-yn-1-ylfuran-2-yl)carbonyl]-N-methylhydrazinecarbothioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 32A sing 1 n n C1 C5 32A doub 2 n y C1 O1 32A sing 3 n y C2 N1 32A sing 4 n n C2 O2 32A doub 5 n n C3 N2 32A sing 6 n n C3 N3 32A sing 7 n n C3 S1 32A doub 8 n n C4 C6 32A sing 9 n n C4 C8 32A doub 10 n y C4 O1 32A sing 11 n y C5 C8 32A sing 12 n y C6 C7 32A trip 13 n n C7 C9 32A sing 14 n n N1 N2 32A sing 15 n n N3 C10 32A sing 16 n n C9 C11 32A sing 17 n n C11 C12 32A sing 18 n n C12 C13 32A sing 19 n n C5 H5 32A sing 20 n n N1 HN1 32A sing 21 n n N2 HN2 32A sing 22 n n N3 HN3 32A sing 23 n n C9 H9 32A sing 24 n n C9 H9A 32A sing 25 n n C8 H8 32A sing 26 n n C10 H10 32A sing 27 n n C10 H10A 32A sing 28 n n C10 H10B 32A sing 29 n n C11 H11 32A sing 30 n n C11 H11A 32A sing 31 n n C12 H12 32A sing 32 n n C12 H12A 32A sing 33 n n C13 H13 32A sing 34 n n C13 H13A 32A sing 35 n n C13 H13B 32A sing 36 n n # _atom_sites.entry_id 3GK1 _atom_sites.fract_transf_matrix[1][1] 0.028847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 92 90 CA CA . C 2 CA A 1 93 91 CA CA . D 3 32A A 1 94 1 32A 32A . E 4 CAC A 1 95 1 CAC CAC . F 5 HOH A 1 96 1 HOH HOH . F 5 HOH A 2 97 2 HOH HOH . F 5 HOH A 3 98 3 HOH HOH . F 5 HOH A 4 99 4 HOH HOH . F 5 HOH A 5 100 5 HOH HOH . F 5 HOH A 6 101 6 HOH HOH . F 5 HOH A 7 102 7 HOH HOH . F 5 HOH A 8 103 8 HOH HOH . F 5 HOH A 9 104 9 HOH HOH . F 5 HOH A 10 105 10 HOH HOH . F 5 HOH A 11 106 11 HOH HOH . F 5 HOH A 12 107 12 HOH HOH . F 5 HOH A 13 108 13 HOH HOH . F 5 HOH A 14 109 14 HOH HOH . F 5 HOH A 15 110 15 HOH HOH . F 5 HOH A 16 111 16 HOH HOH . F 5 HOH A 17 112 17 HOH HOH . F 5 HOH A 18 113 18 HOH HOH . F 5 HOH A 19 114 19 HOH HOH . F 5 HOH A 20 115 20 HOH HOH . F 5 HOH A 21 116 21 HOH HOH . F 5 HOH A 22 117 22 HOH HOH . F 5 HOH A 23 118 23 HOH HOH . F 5 HOH A 24 119 24 HOH HOH . F 5 HOH A 25 120 25 HOH HOH . F 5 HOH A 26 121 26 HOH HOH . F 5 HOH A 27 122 27 HOH HOH . F 5 HOH A 28 123 28 HOH HOH . F 5 HOH A 29 124 29 HOH HOH . F 5 HOH A 30 125 30 HOH HOH . F 5 HOH A 31 126 31 HOH HOH . F 5 HOH A 32 127 32 HOH HOH . F 5 HOH A 33 128 33 HOH HOH . F 5 HOH A 34 129 34 HOH HOH . F 5 HOH A 35 130 35 HOH HOH . F 5 HOH A 36 131 36 HOH HOH . F 5 HOH A 37 132 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 32A . . . D 3 5.876 6.757 13.336 1 64.5 ? C1 32A 94 A 1 HETATM 2 C C2 32A . . . D 3 6.469 7.201 12.047 1 65.16 ? C2 32A 94 A 1 HETATM 3 C C3 32A . . . D 3 9.481 8.78 11.027 1 72.13 ? C3 32A 94 A 1 HETATM 4 C C4 32A . . . D 3 4.232 6.199 14.535 0.5 62.42 ? C4 32A 94 A 1 HETATM 5 C C5 32A . . . D 3 6.408 6.458 14.596 1 64.86 ? C5 32A 94 A 1 HETATM 6 C C6 32A . . . D 3 2.972 5.981 14.85 0.5 60.88 ? C6 32A 94 A 1 HETATM 7 C C7 32A . . . D 3 1.831 5.898 15.243 0.5 57.94 ? C7 32A 94 A 1 HETATM 8 N N1 32A . . . D 3 7.487 8.056 12.058 1 67.97 ? N1 32A 94 A 1 HETATM 9 N N2 32A . . . D 3 8.301 8.181 10.913 1 70.42 ? N2 32A 94 A 1 HETATM 10 N N3 32A . . . D 3 10.187 9.126 9.928 1 71.95 ? N3 32A 94 A 1 HETATM 11 C C9 32A . . . D 3 0.423 6.007 15.579 0.5 55.8 ? C9 32A 94 A 1 HETATM 12 C C8 32A . . . D 3 5.326 6.096 15.381 1 64.78 ? C8 32A 94 A 1 HETATM 13 O O2 32A . . . D 3 6 6.763 11.004 1 68.81 ? O2 32A 94 A 1 HETATM 14 C C10 32A . . . D 3 10.816 8.215 8.979 1 70.34 ? C10 32A 94 A 1 HETATM 15 S S1 32A . . . D 3 9.977 9.096 12.494 1 77.86 ? S1 32A 94 A 1 HETATM 16 O O1 32A . . . D 3 4.519 6.615 13.266 0.5 63.17 ? O1 32A 94 A 1 HETATM 17 C C11 32A . . . D 3 -0.292 6.971 14.657 0.5 53.67 ? C11 32A 94 A 1 HETATM 18 C C12 32A . . . D 3 -1.191 6.201 13.7 0.5 53.55 ? C12 32A 94 A 1 HETATM 19 C C13 32A . . . D 3 -2.554 6.85 13.545 0.5 52.32 ? C13 32A 94 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #