data_3GK1
#
_model_server_result.job_id            DiQhNcxgGOwLU0uBAKIJ_g 
_model_server_result.datetime_utc      '2024-12-01 07:15:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":94}' 
#
_entry.id    3GK1 
#
_exptl.entry_id    3GK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              279.358 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(5-hex-1-yn-1-ylfuran-2-yl)carbonyl]-N-methylhydrazinecarbothioamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GK1 
_cell.length_a            34.666 
_cell.length_b            90.778 
_cell.length_c            58.994 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 19 A SER 18 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc2 A O GLU 22 A GLU 21 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc3 A O ASP 24 A ASP 23 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc4 A O LYS 27 A LYS 26 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc10 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc13 B CA CA . A CA 92 1_555 F O HOH . A HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc14 C CA CA . A CA 93 1_555 F O HOH . A HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C13 H17 N3 O2 S' 
_chem_comp.formula_weight    279.358 
_chem_comp.id                32A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(5-hex-1-yn-1-ylfuran-2-yl)carbonyl]-N-methylhydrazinecarbothioamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 32A sing 1 n n 
C1 C5 32A doub 2 n y 
C1 O1 32A sing 3 n y 
C2 N1 32A sing 4 n n 
C2 O2 32A doub 5 n n 
C3 N2 32A sing 6 n n 
C3 N3 32A sing 7 n n 
C3 S1 32A doub 8 n n 
C4 C6 32A sing 9 n n 
C4 C8 32A doub 10 n y 
C4 O1 32A sing 11 n y 
C5 C8 32A sing 12 n y 
C6 C7 32A trip 13 n n 
C7 C9 32A sing 14 n n 
N1 N2 32A sing 15 n n 
N3 C10 32A sing 16 n n 
C9 C11 32A sing 17 n n 
C11 C12 32A sing 18 n n 
C12 C13 32A sing 19 n n 
C5 H5 32A sing 20 n n 
N1 HN1 32A sing 21 n n 
N2 HN2 32A sing 22 n n 
N3 HN3 32A sing 23 n n 
C9 H9 32A sing 24 n n 
C9 H9A 32A sing 25 n n 
C8 H8 32A sing 26 n n 
C10 H10 32A sing 27 n n 
C10 H10A 32A sing 28 n n 
C10 H10B 32A sing 29 n n 
C11 H11 32A sing 30 n n 
C11 H11A 32A sing 31 n n 
C12 H12 32A sing 32 n n 
C12 H12A 32A sing 33 n n 
C13 H13 32A sing 34 n n 
C13 H13A 32A sing 35 n n 
C13 H13B 32A sing 36 n n 
#
_atom_sites.entry_id                     3GK1 
_atom_sites.fract_transf_matrix[1][1]    0.028847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 92 90 CA CA . 
C 2 CA A 1 93 91 CA CA . 
D 3 32A A 1 94 1 32A 32A . 
E 4 CAC A 1 95 1 CAC CAC . 
F 5 HOH A 1 96 1 HOH HOH . 
F 5 HOH A 2 97 2 HOH HOH . 
F 5 HOH A 3 98 3 HOH HOH . 
F 5 HOH A 4 99 4 HOH HOH . 
F 5 HOH A 5 100 5 HOH HOH . 
F 5 HOH A 6 101 6 HOH HOH . 
F 5 HOH A 7 102 7 HOH HOH . 
F 5 HOH A 8 103 8 HOH HOH . 
F 5 HOH A 9 104 9 HOH HOH . 
F 5 HOH A 10 105 10 HOH HOH . 
F 5 HOH A 11 106 11 HOH HOH . 
F 5 HOH A 12 107 12 HOH HOH . 
F 5 HOH A 13 108 13 HOH HOH . 
F 5 HOH A 14 109 14 HOH HOH . 
F 5 HOH A 15 110 15 HOH HOH . 
F 5 HOH A 16 111 16 HOH HOH . 
F 5 HOH A 17 112 17 HOH HOH . 
F 5 HOH A 18 113 18 HOH HOH . 
F 5 HOH A 19 114 19 HOH HOH . 
F 5 HOH A 20 115 20 HOH HOH . 
F 5 HOH A 21 116 21 HOH HOH . 
F 5 HOH A 22 117 22 HOH HOH . 
F 5 HOH A 23 118 23 HOH HOH . 
F 5 HOH A 24 119 24 HOH HOH . 
F 5 HOH A 25 120 25 HOH HOH . 
F 5 HOH A 26 121 26 HOH HOH . 
F 5 HOH A 27 122 27 HOH HOH . 
F 5 HOH A 28 123 28 HOH HOH . 
F 5 HOH A 29 124 29 HOH HOH . 
F 5 HOH A 30 125 30 HOH HOH . 
F 5 HOH A 31 126 31 HOH HOH . 
F 5 HOH A 32 127 32 HOH HOH . 
F 5 HOH A 33 128 33 HOH HOH . 
F 5 HOH A 34 129 34 HOH HOH . 
F 5 HOH A 35 130 35 HOH HOH . 
F 5 HOH A 36 131 36 HOH HOH . 
F 5 HOH A 37 132 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 32A . . . D 3 5.876 6.757 13.336 1 64.5 ? C1 32A 94 A 1 
HETATM 2 C C2 32A . . . D 3 6.469 7.201 12.047 1 65.16 ? C2 32A 94 A 1 
HETATM 3 C C3 32A . . . D 3 9.481 8.78 11.027 1 72.13 ? C3 32A 94 A 1 
HETATM 4 C C4 32A . . . D 3 4.232 6.199 14.535 0.5 62.42 ? C4 32A 94 A 1 
HETATM 5 C C5 32A . . . D 3 6.408 6.458 14.596 1 64.86 ? C5 32A 94 A 1 
HETATM 6 C C6 32A . . . D 3 2.972 5.981 14.85 0.5 60.88 ? C6 32A 94 A 1 
HETATM 7 C C7 32A . . . D 3 1.831 5.898 15.243 0.5 57.94 ? C7 32A 94 A 1 
HETATM 8 N N1 32A . . . D 3 7.487 8.056 12.058 1 67.97 ? N1 32A 94 A 1 
HETATM 9 N N2 32A . . . D 3 8.301 8.181 10.913 1 70.42 ? N2 32A 94 A 1 
HETATM 10 N N3 32A . . . D 3 10.187 9.126 9.928 1 71.95 ? N3 32A 94 A 1 
HETATM 11 C C9 32A . . . D 3 0.423 6.007 15.579 0.5 55.8 ? C9 32A 94 A 1 
HETATM 12 C C8 32A . . . D 3 5.326 6.096 15.381 1 64.78 ? C8 32A 94 A 1 
HETATM 13 O O2 32A . . . D 3 6 6.763 11.004 1 68.81 ? O2 32A 94 A 1 
HETATM 14 C C10 32A . . . D 3 10.816 8.215 8.979 1 70.34 ? C10 32A 94 A 1 
HETATM 15 S S1 32A . . . D 3 9.977 9.096 12.494 1 77.86 ? S1 32A 94 A 1 
HETATM 16 O O1 32A . . . D 3 4.519 6.615 13.266 0.5 63.17 ? O1 32A 94 A 1 
HETATM 17 C C11 32A . . . D 3 -0.292 6.971 14.657 0.5 53.67 ? C11 32A 94 A 1 
HETATM 18 C C12 32A . . . D 3 -1.191 6.201 13.7 0.5 53.55 ? C12 32A 94 A 1 
HETATM 19 C C13 32A . . . D 3 -2.554 6.85 13.545 0.5 52.32 ? C13 32A 94 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#