data_3GK4 # _model_server_result.job_id Gm1YKVmtv19ZeImhpe7g2g _model_server_result.datetime_utc '2024-12-01 07:49:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":92}' # _entry.id 3GK4 # _exptl.entry_id 3GK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GK4 _cell.length_a 34.459 _cell.length_b 89.532 _cell.length_c 59.234 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 X SER 18 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O GLU 22 X GLU 21 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A O ASP 24 X ASP 23 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A O LYS 27 X LYS 26 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 A O GLU 68 X GLU 67 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc13 B CA CA . X CA 92 1_555 E O HOH . X HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc14 C CA CA . X CA 93 1_555 E O HOH . X HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GK4 _atom_sites.fract_transf_matrix[1][1] 0.02902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA X 1 92 90 CA CA . C 2 CA X 1 93 91 CA CA . D 3 53A X 1 94 1 53A 53A . E 4 HOH X 1 95 1 HOH HOH . E 4 HOH X 2 96 2 HOH HOH . E 4 HOH X 3 97 3 HOH HOH . E 4 HOH X 4 98 4 HOH HOH . E 4 HOH X 5 99 5 HOH HOH . E 4 HOH X 6 100 6 HOH HOH . E 4 HOH X 7 101 7 HOH HOH . E 4 HOH X 8 102 8 HOH HOH . E 4 HOH X 9 103 9 HOH HOH . E 4 HOH X 10 104 10 HOH HOH . E 4 HOH X 11 105 11 HOH HOH . E 4 HOH X 12 106 12 HOH HOH . E 4 HOH X 13 107 13 HOH HOH . E 4 HOH X 14 108 14 HOH HOH . E 4 HOH X 15 109 15 HOH HOH . E 4 HOH X 16 110 16 HOH HOH . E 4 HOH X 17 111 17 HOH HOH . E 4 HOH X 18 112 19 HOH HOH . E 4 HOH X 19 113 21 HOH HOH . E 4 HOH X 20 114 22 HOH HOH . E 4 HOH X 21 115 23 HOH HOH . E 4 HOH X 22 116 24 HOH HOH . E 4 HOH X 23 117 25 HOH HOH . E 4 HOH X 24 118 26 HOH HOH . E 4 HOH X 25 119 27 HOH HOH . E 4 HOH X 26 120 28 HOH HOH . E 4 HOH X 27 121 29 HOH HOH . E 4 HOH X 28 122 30 HOH HOH . E 4 HOH X 29 123 31 HOH HOH . E 4 HOH X 30 124 32 HOH HOH . E 4 HOH X 31 125 33 HOH HOH . E 4 HOH X 32 126 34 HOH HOH . E 4 HOH X 33 127 35 HOH HOH . E 4 HOH X 34 128 36 HOH HOH . E 4 HOH X 35 129 37 HOH HOH . E 4 HOH X 36 130 38 HOH HOH . E 4 HOH X 37 131 39 HOH HOH . E 4 HOH X 38 132 40 HOH HOH . E 4 HOH X 39 133 41 HOH HOH . E 4 HOH X 40 134 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.113 _atom_site.Cartn_y -17.126 _atom_site.Cartn_z -10.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 92 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #