data_3GK4 # _model_server_result.job_id 1n31ILFIK8dICubYSvbEPg _model_server_result.datetime_utc '2024-11-06 01:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":94}' # _entry.id 3GK4 # _exptl.entry_id 3GK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.44 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 5-{[(1R)-1-(ethoxycarbonyl)-2-oxopropyl]sulfanyl}-1,2-dihydro[1,2,3]triazolo[1,5-a]quinazoline-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GK4 _cell.length_a 34.459 _cell.length_b 89.532 _cell.length_c 59.234 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 X SER 18 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A O GLU 22 X GLU 21 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A O ASP 24 X ASP 23 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A O LYS 27 X LYS 26 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 B CA CA . X CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 A O GLU 68 X GLU 67 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 C CA CA . X CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc13 B CA CA . X CA 92 1_555 E O HOH . X HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc14 C CA CA . X CA 93 1_555 E O HOH . X HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? # _chem_comp.formula 'C18 H20 N4 O5 S' _chem_comp.formula_weight 404.44 _chem_comp.id 53A _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 5-{[(1R)-1-(ethoxycarbonyl)-2-oxopropyl]sulfanyl}-1,2-dihydro[1,2,3]triazolo[1,5-a]quinazoline-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N3 53A sing 1 n n N1 C6 53A sing 2 n n N1 C1 53A sing 3 n n N3 N4 53A sing 4 n n C4 C5 53A sing 5 n n C4 S1 53A sing 6 n n C4 N2 53A doub 7 n n C5 C6 53A doub 8 n y C5 C11 53A sing 9 n y C6 C12 53A sing 10 n y O2 C9 53A doub 11 n n N4 C3 53A sing 12 n n O3 C10 53A doub 13 n n C10 C13 53A sing 14 n n C10 C7 53A sing 15 n n C7 C9 53A sing 16 n n C7 S1 53A sing 17 n n C9 O5 53A sing 18 n n O5 C15 53A sing 19 n n C15 C19 53A sing 20 n n N2 C1 53A sing 21 n n C11 C16 53A doub 22 n y C16 C17 53A sing 23 n y C17 C12 53A doub 24 n y C3 C1 53A doub 25 n n C3 C8 53A sing 26 n n C8 O1 53A doub 27 n n C8 O4 53A sing 28 n n O4 C14 53A sing 29 n n C14 C18 53A sing 30 n n N3 HN3 53A sing 31 n n N4 HN4 53A sing 32 n n C13 H13 53A sing 33 n n C13 H13A 53A sing 34 n n C13 H13B 53A sing 35 n n C7 H7 53A sing 36 n n C15 H15 53A sing 37 n n C15 H15A 53A sing 38 n n C19 H19 53A sing 39 n n C19 H19A 53A sing 40 n n C19 H19B 53A sing 41 n n C11 H11 53A sing 42 n n C16 H16 53A sing 43 n n C17 H17 53A sing 44 n n C12 H12 53A sing 45 n n C14 H14 53A sing 46 n n C14 H14A 53A sing 47 n n C18 H18 53A sing 48 n n C18 H18A 53A sing 49 n n C18 H18B 53A sing 50 n n # _atom_sites.entry_id 3GK4 _atom_sites.fract_transf_matrix[1][1] 0.02902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA X 1 92 90 CA CA . C 2 CA X 1 93 91 CA CA . D 3 53A X 1 94 1 53A 53A . E 4 HOH X 1 95 1 HOH HOH . E 4 HOH X 2 96 2 HOH HOH . E 4 HOH X 3 97 3 HOH HOH . E 4 HOH X 4 98 4 HOH HOH . E 4 HOH X 5 99 5 HOH HOH . E 4 HOH X 6 100 6 HOH HOH . E 4 HOH X 7 101 7 HOH HOH . E 4 HOH X 8 102 8 HOH HOH . E 4 HOH X 9 103 9 HOH HOH . E 4 HOH X 10 104 10 HOH HOH . E 4 HOH X 11 105 11 HOH HOH . E 4 HOH X 12 106 12 HOH HOH . E 4 HOH X 13 107 13 HOH HOH . E 4 HOH X 14 108 14 HOH HOH . E 4 HOH X 15 109 15 HOH HOH . E 4 HOH X 16 110 16 HOH HOH . E 4 HOH X 17 111 17 HOH HOH . E 4 HOH X 18 112 19 HOH HOH . E 4 HOH X 19 113 21 HOH HOH . E 4 HOH X 20 114 22 HOH HOH . E 4 HOH X 21 115 23 HOH HOH . E 4 HOH X 22 116 24 HOH HOH . E 4 HOH X 23 117 25 HOH HOH . E 4 HOH X 24 118 26 HOH HOH . E 4 HOH X 25 119 27 HOH HOH . E 4 HOH X 26 120 28 HOH HOH . E 4 HOH X 27 121 29 HOH HOH . E 4 HOH X 28 122 30 HOH HOH . E 4 HOH X 29 123 31 HOH HOH . E 4 HOH X 30 124 32 HOH HOH . E 4 HOH X 31 125 33 HOH HOH . E 4 HOH X 32 126 34 HOH HOH . E 4 HOH X 33 127 35 HOH HOH . E 4 HOH X 34 128 36 HOH HOH . E 4 HOH X 35 129 37 HOH HOH . E 4 HOH X 36 130 38 HOH HOH . E 4 HOH X 37 131 39 HOH HOH . E 4 HOH X 38 132 40 HOH HOH . E 4 HOH X 39 133 41 HOH HOH . E 4 HOH X 40 134 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 53A . . . D 3 3.029 -13.526 14.882 0.5 62.84 ? N1 53A 94 X 1 HETATM 2 N N3 53A . . . D 3 3.942 -14.577 15.039 0.5 62.67 ? N3 53A 94 X 1 HETATM 3 C C4 53A . . . D 3 0.825 -11.773 14.654 0.5 62.96 ? C4 53A 94 X 1 HETATM 4 C C5 53A . . . D 3 2.21 -11.237 14.458 0.5 62.38 ? C5 53A 94 X 1 HETATM 5 C C6 53A . . . D 3 3.345 -12.195 14.589 0.5 62.9 ? C6 53A 94 X 1 HETATM 6 O O2 53A . . . D 3 -1.631 -13.96 13.247 0.5 65.85 ? O2 53A 94 X 1 HETATM 7 N N4 53A . . . D 3 3.145 -15.72 15.308 0.5 62.86 ? N4 53A 94 X 1 HETATM 8 O O3 53A . . . D 3 -4.237 -11.653 13.844 0.5 66.76 ? O3 53A 94 X 1 HETATM 9 C C10 53A . . . D 3 -3.213 -11.001 14.003 0.5 66.32 ? C10 53A 94 X 1 HETATM 10 C C13 53A . . . D 3 -3.29 -9.569 14.462 0.5 66.52 ? C13 53A 94 X 1 HETATM 11 C C7 53A . . . D 3 -1.881 -11.649 13.708 0.5 65.54 ? C7 53A 94 X 1 HETATM 12 C C9 53A . . . D 3 -1.893 -13.106 14.083 0.5 66.18 ? C9 53A 94 X 1 HETATM 13 O O5 53A . . . D 3 -2.194 -13.505 15.456 0.5 67.54 ? O5 53A 94 X 1 HETATM 14 C C15 53A . . . D 3 -3.428 -14.134 15.816 0.5 67.53 ? C15 53A 94 X 1 HETATM 15 C C19 53A . . . D 3 -3.907 -13.61 17.152 0.5 67.53 ? C19 53A 94 X 1 HETATM 16 S S1 53A . . . D 3 -0.564 -10.798 14.54 0.5 63.76 ? S1 53A 94 X 1 HETATM 17 N N2 53A . . . D 3 0.678 -13.087 14.936 0.5 62.61 ? N2 53A 94 X 1 HETATM 18 C C11 53A . . . D 3 2.482 -9.9 14.171 0.5 62.53 ? C11 53A 94 X 1 HETATM 19 C C16 53A . . . D 3 3.809 -9.483 14.008 0.5 62.68 ? C16 53A 94 X 1 HETATM 20 C C17 53A . . . D 3 4.872 -10.383 14.13 0.5 62.77 ? C17 53A 94 X 1 HETATM 21 C C12 53A . . . D 3 4.653 -11.735 14.417 0.5 62.98 ? C12 53A 94 X 1 HETATM 22 C C3 53A . . . D 3 1.843 -15.343 15.313 0.5 62.71 ? C3 53A 94 X 1 HETATM 23 C C1 53A . . . D 3 1.765 -13.893 15.032 0.5 62.81 ? C1 53A 94 X 1 HETATM 24 C C8 53A . . . D 3 0.561 -16.061 15.539 0.5 62.71 ? C8 53A 94 X 1 HETATM 25 O O1 53A . . . D 3 -0.332 -15.516 16.153 0.5 62.53 ? O1 53A 94 X 1 HETATM 26 O O4 53A . . . D 3 0.371 -17.424 15.045 0.5 63.59 ? O4 53A 94 X 1 HETATM 27 C C14 53A . . . D 3 -0.891 -18.106 15.143 0.5 63.09 ? C14 53A 94 X 1 HETATM 28 C C18 53A . . . D 3 -2.048 -17.256 14.651 0.5 62.28 ? C18 53A 94 X 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #