data_3GK9
#
_model_server_result.job_id            PUjUeKlXDxflJf0S6Q784Q 
_model_server_result.datetime_utc      '2024-11-14 07:15:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gk9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":154}' 
#
_entry.id    3GK9 
#
_exptl.entry_id    3GK9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              131.293 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            XENON 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GK9 
_cell.length_a            88.83 
_cell.length_b            88.83 
_cell.length_c            110.926 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GK9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_455 y-1/3,x+1/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -44.415 25.643012 36.975333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 67 A HIS 64 1_555 G FE HEM . A HEM 200 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 64 1_555 G FE HEM . A HEM 200 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc3 A NE2 HIS 99 A HIS 96 1_555 G FE HEM . A HEM 200 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc4 A NE2 HIS 99 A HIS 96 1_555 G FE HEM . A HEM 200 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           Xe 
_chem_comp.formula_weight    131.293 
_chem_comp.id                XE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              XENON 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3GK9 
_atom_sites.fract_transf_matrix[1][1]    0.011257 
_atom_sites.fract_transf_matrix[1][2]    0.006499 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 XE A 1 152 1 XE XE . 
C 2 XE A 1 153 2 XE XE . 
D 2 XE A 1 154 3 XE XE . 
E 2 XE A 1 155 4 XE XE . 
F 3 SO4 A 1 156 1 SO4 SO4 . 
G 4 HEM A 1 200 200 HEM HEM . 
H 5 HOH A 1 157 1 HOH HOH . 
H 5 HOH A 2 158 2 HOH HOH . 
H 5 HOH A 3 159 3 HOH HOH . 
H 5 HOH A 4 160 4 HOH HOH . 
H 5 HOH A 5 161 5 HOH HOH . 
H 5 HOH A 6 162 6 HOH HOH . 
H 5 HOH A 7 163 7 HOH HOH . 
H 5 HOH A 8 164 8 HOH HOH . 
H 5 HOH A 9 165 9 HOH HOH . 
H 5 HOH A 10 166 10 HOH HOH . 
H 5 HOH A 11 167 11 HOH HOH . 
H 5 HOH A 12 168 12 HOH HOH . 
H 5 HOH A 13 169 13 HOH HOH . 
H 5 HOH A 14 170 14 HOH HOH . 
H 5 HOH A 15 171 15 HOH HOH . 
H 5 HOH A 16 172 16 HOH HOH . 
H 5 HOH A 17 173 17 HOH HOH . 
H 5 HOH A 18 174 18 HOH HOH . 
H 5 HOH A 19 175 19 HOH HOH . 
H 5 HOH A 20 176 20 HOH HOH . 
H 5 HOH A 21 177 21 HOH HOH . 
H 5 HOH A 22 178 22 HOH HOH . 
H 5 HOH A 23 179 23 HOH HOH . 
H 5 HOH A 24 180 24 HOH HOH . 
H 5 HOH A 25 181 25 HOH HOH . 
H 5 HOH A 26 182 26 HOH HOH . 
H 5 HOH A 27 183 27 HOH HOH . 
H 5 HOH A 28 184 28 HOH HOH . 
H 5 HOH A 29 185 29 HOH HOH . 
H 5 HOH A 30 186 30 HOH HOH . 
H 5 HOH A 31 187 31 HOH HOH . 
H 5 HOH A 32 188 32 HOH HOH . 
H 5 HOH A 33 189 33 HOH HOH . 
H 5 HOH A 34 190 34 HOH HOH . 
H 5 HOH A 35 191 35 HOH HOH . 
H 5 HOH A 36 192 36 HOH HOH . 
H 5 HOH A 37 193 37 HOH HOH . 
H 5 HOH A 38 194 38 HOH HOH . 
H 5 HOH A 39 195 39 HOH HOH . 
H 5 HOH A 40 196 40 HOH HOH . 
H 5 HOH A 41 197 41 HOH HOH . 
H 5 HOH A 42 198 42 HOH HOH . 
H 5 HOH A 43 199 43 HOH HOH . 
H 5 HOH A 44 201 44 HOH HOH . 
H 5 HOH A 45 202 45 HOH HOH . 
H 5 HOH A 46 203 46 HOH HOH . 
H 5 HOH A 47 204 47 HOH HOH . 
H 5 HOH A 48 205 48 HOH HOH . 
H 5 HOH A 49 206 49 HOH HOH . 
H 5 HOH A 50 207 50 HOH HOH . 
H 5 HOH A 51 208 51 HOH HOH . 
H 5 HOH A 52 209 52 HOH HOH . 
H 5 HOH A 53 210 53 HOH HOH . 
H 5 HOH A 54 211 54 HOH HOH . 
H 5 HOH A 55 212 55 HOH HOH . 
H 5 HOH A 56 213 56 HOH HOH . 
H 5 HOH A 57 214 57 HOH HOH . 
H 5 HOH A 58 215 58 HOH HOH . 
H 5 HOH A 59 216 59 HOH HOH . 
H 5 HOH A 60 217 60 HOH HOH . 
H 5 HOH A 61 218 61 HOH HOH . 
H 5 HOH A 62 219 62 HOH HOH . 
H 5 HOH A 63 220 63 HOH HOH . 
H 5 HOH A 64 221 64 HOH HOH . 
H 5 HOH A 65 222 65 HOH HOH . 
H 5 HOH A 66 223 66 HOH HOH . 
H 5 HOH A 67 224 67 HOH HOH . 
H 5 HOH A 68 225 68 HOH HOH . 
H 5 HOH A 69 226 69 HOH HOH . 
H 5 HOH A 70 227 70 HOH HOH . 
H 5 HOH A 71 228 71 HOH HOH . 
H 5 HOH A 72 229 72 HOH HOH . 
H 5 HOH A 73 230 73 HOH HOH . 
H 5 HOH A 74 231 74 HOH HOH . 
H 5 HOH A 75 232 75 HOH HOH . 
H 5 HOH A 76 233 76 HOH HOH . 
H 5 HOH A 77 234 77 HOH HOH . 
H 5 HOH A 78 235 78 HOH HOH . 
H 5 HOH A 79 236 79 HOH HOH . 
H 5 HOH A 80 237 80 HOH HOH . 
H 5 HOH A 81 238 81 HOH HOH . 
H 5 HOH A 82 239 82 HOH HOH . 
H 5 HOH A 83 240 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 XE XE XE . A . D 2 -3.355 21.554 18.7 0.45 15.56 ? XE XE 154 A 1 
HETATM 2 XE XE XE . B . D 2 -3.073 22.202 18.235 0.35 12.63 ? XE XE 154 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           45 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           2 
#