data_3GKI # _model_server_result.job_id FFkd_by_jc3LsDP2a8xN8A _model_server_result.datetime_utc '2024-11-09 02:30:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":253}' # _entry.id 3GKI # _exptl.entry_id 3GKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GKI _cell.length_a 65.691 _cell.length_b 65.691 _cell.length_c 82.367 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 25 1_555 A SG CYS 54 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 11 A CYS 31 1_555 A SG CYS 22 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 43 A CYS 63 1_555 A SG CYS 89 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 55 A CYS 75 1_555 A SG CYS 93 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 A SG CYS 77 A CYS 97 1_555 A SG CYS 218 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 80 A CYS 100 1_555 A SG CYS 140 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf7 A SG CYS 157 A CYS 177 1_555 A SG CYS 164 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 A SG CYS 207 A CYS 227 1_555 A SG CYS 223 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf9 A SG CYS 220 A CYS 240 1_555 A SG CYS 227 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 C C1 NAG . A NAG 3 1_555 A ND2 ASN 138 A ASN 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 202 A ASN 222 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GKI _atom_sites.fract_transf_matrix[1][1] 0.015223 _atom_sites.fract_transf_matrix[1][2] 0.008789 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 3 3 NAG NAG . D 4 CLR A 1 253 1 CLR CLR . E 5 HOH A 1 4 4 HOH HOH . E 5 HOH A 2 5 5 HOH HOH . E 5 HOH A 3 6 6 HOH HOH . E 5 HOH A 4 7 7 HOH HOH . E 5 HOH A 5 8 8 HOH HOH . E 5 HOH A 6 9 9 HOH HOH . E 5 HOH A 7 10 10 HOH HOH . E 5 HOH A 8 11 11 HOH HOH . E 5 HOH A 9 12 12 HOH HOH . E 5 HOH A 10 13 13 HOH HOH . E 5 HOH A 11 14 14 HOH HOH . E 5 HOH A 12 15 15 HOH HOH . E 5 HOH A 13 16 16 HOH HOH . E 5 HOH A 14 17 17 HOH HOH . E 5 HOH A 15 18 18 HOH HOH . E 5 HOH A 16 19 19 HOH HOH . E 5 HOH A 17 20 20 HOH HOH . E 5 HOH A 18 254 1 HOH HOH . E 5 HOH A 19 255 2 HOH HOH . E 5 HOH A 20 256 3 HOH HOH . E 5 HOH A 21 257 21 HOH HOH . E 5 HOH A 22 258 22 HOH HOH . E 5 HOH A 23 259 23 HOH HOH . E 5 HOH A 24 260 24 HOH HOH . E 5 HOH A 25 261 25 HOH HOH . E 5 HOH A 26 262 26 HOH HOH . E 5 HOH A 27 263 27 HOH HOH . E 5 HOH A 28 264 28 HOH HOH . E 5 HOH A 29 265 29 HOH HOH . E 5 HOH A 30 266 30 HOH HOH . E 5 HOH A 31 267 31 HOH HOH . E 5 HOH A 32 268 32 HOH HOH . E 5 HOH A 33 269 33 HOH HOH . E 5 HOH A 34 270 34 HOH HOH . E 5 HOH A 35 271 35 HOH HOH . E 5 HOH A 36 272 36 HOH HOH . E 5 HOH A 37 273 37 HOH HOH . E 5 HOH A 38 274 38 HOH HOH . E 5 HOH A 39 275 39 HOH HOH . E 5 HOH A 40 276 40 HOH HOH . E 5 HOH A 41 277 41 HOH HOH . E 5 HOH A 42 278 42 HOH HOH . E 5 HOH A 43 279 43 HOH HOH . E 5 HOH A 44 280 44 HOH HOH . E 5 HOH A 45 281 45 HOH HOH . E 5 HOH A 46 282 46 HOH HOH . E 5 HOH A 47 283 47 HOH HOH . E 5 HOH A 48 284 48 HOH HOH . E 5 HOH A 49 285 49 HOH HOH . E 5 HOH A 50 286 50 HOH HOH . E 5 HOH A 51 287 51 HOH HOH . E 5 HOH A 52 288 52 HOH HOH . E 5 HOH A 53 289 53 HOH HOH . E 5 HOH A 54 290 54 HOH HOH . E 5 HOH A 55 291 55 HOH HOH . E 5 HOH A 56 292 56 HOH HOH . E 5 HOH A 57 293 57 HOH HOH . E 5 HOH A 58 294 58 HOH HOH . E 5 HOH A 59 295 59 HOH HOH . E 5 HOH A 60 296 60 HOH HOH . E 5 HOH A 61 297 61 HOH HOH . E 5 HOH A 62 298 62 HOH HOH . E 5 HOH A 63 299 63 HOH HOH . E 5 HOH A 64 300 64 HOH HOH . E 5 HOH A 65 301 65 HOH HOH . E 5 HOH A 66 302 66 HOH HOH . E 5 HOH A 67 303 67 HOH HOH . E 5 HOH A 68 304 68 HOH HOH . E 5 HOH A 69 305 69 HOH HOH . E 5 HOH A 70 306 70 HOH HOH . E 5 HOH A 71 307 71 HOH HOH . E 5 HOH A 72 308 72 HOH HOH . E 5 HOH A 73 309 73 HOH HOH . E 5 HOH A 74 310 74 HOH HOH . E 5 HOH A 75 311 75 HOH HOH . E 5 HOH A 76 312 76 HOH HOH . E 5 HOH A 77 313 77 HOH HOH . E 5 HOH A 78 314 78 HOH HOH . E 5 HOH A 79 315 79 HOH HOH . E 5 HOH A 80 316 80 HOH HOH . E 5 HOH A 81 317 81 HOH HOH . E 5 HOH A 82 318 82 HOH HOH . E 5 HOH A 83 319 83 HOH HOH . E 5 HOH A 84 320 84 HOH HOH . E 5 HOH A 85 321 85 HOH HOH . E 5 HOH A 86 322 86 HOH HOH . E 5 HOH A 87 323 87 HOH HOH . E 5 HOH A 88 324 88 HOH HOH . E 5 HOH A 89 325 89 HOH HOH . E 5 HOH A 90 326 90 HOH HOH . E 5 HOH A 91 327 91 HOH HOH . E 5 HOH A 92 328 92 HOH HOH . E 5 HOH A 93 329 93 HOH HOH . E 5 HOH A 94 330 94 HOH HOH . E 5 HOH A 95 331 95 HOH HOH . E 5 HOH A 96 332 96 HOH HOH . E 5 HOH A 97 333 97 HOH HOH . E 5 HOH A 98 334 98 HOH HOH . E 5 HOH A 99 335 99 HOH HOH . E 5 HOH A 100 336 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 4 -38.431 -30.367 5.954 1 43.51 ? C1 CLR 253 A 1 HETATM 2 C C2 CLR . . . D 4 -39.129 -30.546 7.335 1 41.38 ? C2 CLR 253 A 1 HETATM 3 C C3 CLR . . . D 4 -37.997 -30.542 8.381 1 43.06 ? C3 CLR 253 A 1 HETATM 4 C C4 CLR . . . D 4 -37.371 -29.154 8.425 1 41.41 ? C4 CLR 253 A 1 HETATM 5 C C5 CLR . . . D 4 -36.743 -28.895 7.066 1 43.17 ? C5 CLR 253 A 1 HETATM 6 C C6 CLR . . . D 4 -35.464 -28.474 7.066 1 42.21 ? C6 CLR 253 A 1 HETATM 7 C C7 CLR . . . D 4 -34.654 -28.23 5.833 1 43.21 ? C7 CLR 253 A 1 HETATM 8 C C8 CLR . . . D 4 -35.606 -27.956 4.68 1 43.11 ? C8 CLR 253 A 1 HETATM 9 C C9 CLR . . . D 4 -36.607 -29.132 4.594 1 43.2 ? C9 CLR 253 A 1 HETATM 10 C C10 CLR . . . D 4 -37.57 -29.094 5.807 1 42.44 ? C10 CLR 253 A 1 HETATM 11 C C11 CLR . . . D 4 -37.305 -29.235 3.224 1 42.55 ? C11 CLR 253 A 1 HETATM 12 C C12 CLR . . . D 4 -36.36 -29.036 2.02 1 43.62 ? C12 CLR 253 A 1 HETATM 13 C C13 CLR . . . D 4 -35.663 -27.665 2.11 1 43.19 ? C13 CLR 253 A 1 HETATM 14 C C14 CLR . . . D 4 -34.819 -27.729 3.389 1 43.49 ? C14 CLR 253 A 1 HETATM 15 C C15 CLR . . . D 4 -33.869 -26.524 3.328 1 43.42 ? C15 CLR 253 A 1 HETATM 16 C C16 CLR . . . D 4 -33.649 -26.374 1.812 1 43.01 ? C16 CLR 253 A 1 HETATM 17 C C17 CLR . . . D 4 -34.565 -27.371 1.074 1 43.91 ? C17 CLR 253 A 1 HETATM 18 C C18 CLR . . . D 4 -36.643 -26.489 2.09 1 44.02 ? C18 CLR 253 A 1 HETATM 19 C C19 CLR . . . D 4 -38.514 -27.913 5.694 1 43.95 ? C19 CLR 253 A 1 HETATM 20 C C20 CLR . . . D 4 -34.941 -26.907 -0.338 1 43.25 ? C20 CLR 253 A 1 HETATM 21 C C21 CLR . . . D 4 -36.067 -27.727 -0.962 1 44.9 ? C21 CLR 253 A 1 HETATM 22 C C22 CLR . . . D 4 -33.728 -27.032 -1.246 1 42.63 ? C22 CLR 253 A 1 HETATM 23 C C23 CLR . . . D 4 -33.874 -26.247 -2.544 1 43.63 ? C23 CLR 253 A 1 HETATM 24 C C24 CLR . . . D 4 -34.068 -24.765 -2.259 1 45.48 ? C24 CLR 253 A 1 HETATM 25 C C25 CLR . . . D 4 -33.797 -23.96 -3.52 1 46.23 ? C25 CLR 253 A 1 HETATM 26 C C26 CLR . . . D 4 -34.029 -22.466 -3.3 1 47.6 ? C26 CLR 253 A 1 HETATM 27 C C27 CLR . . . D 4 -32.376 -24.234 -3.975 1 47.65 ? C27 CLR 253 A 1 HETATM 28 O O1 CLR . . . D 4 -38.461 -30.888 9.692 1 42.58 ? O1 CLR 253 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #