data_3GKV # _model_server_result.job_id VjcfXJOWrNkYp3A3xCgsnA _model_server_result.datetime_utc '2024-10-23 15:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":199}' # _entry.id 3GKV # _exptl.entry_id 3GKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 28.01 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBON MONOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.17 _cell.angle_gamma 90 _cell.entry_id 3GKV _cell.length_a 86.88 _cell.length_b 87.647 _cell.length_c 55.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 D C CMO . A CMO 199 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc3 C FE HEM . A HEM 200 1_555 G O HOH . A HOH 1291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc5 F C CMO . B CMO 399 1_555 E FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? # _chem_comp.formula 'C O' _chem_comp.formula_weight 28.01 _chem_comp.id CMO _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBON MONOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id CMO _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 76 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 3GKV _atom_sites.fract_transf_matrix[1][1] 0.01151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002066 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 200 200 HEM HEM . D 4 CMO A 1 199 199 CMO CMO . E 3 HEM B 1 400 400 HEM HEM . F 4 CMO B 1 399 399 CMO CMO . G 5 HOH A 1 1001 1001 HOH HOH . G 5 HOH A 2 1002 1002 HOH HOH . G 5 HOH A 3 1003 1003 HOH HOH . G 5 HOH A 4 1004 1004 HOH HOH . G 5 HOH A 5 1005 1005 HOH HOH . G 5 HOH A 6 1006 1006 HOH HOH . G 5 HOH A 7 1008 1008 HOH HOH . G 5 HOH A 8 1009 1009 HOH HOH . G 5 HOH A 9 1010 1010 HOH HOH . G 5 HOH A 10 1013 1013 HOH HOH . G 5 HOH A 11 1014 1014 HOH HOH . G 5 HOH A 12 1015 1015 HOH HOH . G 5 HOH A 13 1019 1019 HOH HOH . G 5 HOH A 14 1020 1020 HOH HOH . G 5 HOH A 15 1021 1021 HOH HOH . G 5 HOH A 16 1026 1026 HOH HOH . G 5 HOH A 17 1027 1027 HOH HOH . G 5 HOH A 18 1028 1028 HOH HOH . G 5 HOH A 19 1030 1030 HOH HOH . G 5 HOH A 20 1032 1032 HOH HOH . G 5 HOH A 21 1035 1035 HOH HOH . G 5 HOH A 22 1039 1039 HOH HOH . G 5 HOH A 23 1040 1040 HOH HOH . G 5 HOH A 24 1041 1041 HOH HOH . G 5 HOH A 25 1042 1042 HOH HOH . G 5 HOH A 26 1043 1043 HOH HOH . G 5 HOH A 27 1045 1045 HOH HOH . G 5 HOH A 28 1047 1047 HOH HOH . G 5 HOH A 29 1048 1048 HOH HOH . G 5 HOH A 30 1051 1051 HOH HOH . G 5 HOH A 31 1054 1054 HOH HOH . G 5 HOH A 32 1061 1061 HOH HOH . G 5 HOH A 33 1062 1062 HOH HOH . G 5 HOH A 34 1063 1063 HOH HOH . G 5 HOH A 35 1065 1065 HOH HOH . G 5 HOH A 36 1066 1066 HOH HOH . G 5 HOH A 37 1072 1072 HOH HOH . G 5 HOH A 38 1074 1074 HOH HOH . G 5 HOH A 39 1079 1079 HOH HOH . G 5 HOH A 40 1080 1080 HOH HOH . G 5 HOH A 41 1081 1081 HOH HOH . G 5 HOH A 42 1083 1083 HOH HOH . G 5 HOH A 43 1084 1084 HOH HOH . G 5 HOH A 44 1085 1085 HOH HOH . G 5 HOH A 45 1087 1087 HOH HOH . G 5 HOH A 46 1088 1088 HOH HOH . G 5 HOH A 47 1089 1089 HOH HOH . G 5 HOH A 48 1090 1090 HOH HOH . G 5 HOH A 49 1092 1092 HOH HOH . G 5 HOH A 50 1096 1096 HOH HOH . G 5 HOH A 51 1097 1097 HOH HOH . G 5 HOH A 52 1098 1098 HOH HOH . G 5 HOH A 53 1100 1100 HOH HOH . G 5 HOH A 54 1103 1103 HOH HOH . G 5 HOH A 55 1104 1104 HOH HOH . G 5 HOH A 56 1106 1106 HOH HOH . G 5 HOH A 57 1108 1108 HOH HOH . G 5 HOH A 58 1109 1109 HOH HOH . G 5 HOH A 59 1117 1117 HOH HOH . G 5 HOH A 60 1119 1119 HOH HOH . G 5 HOH A 61 1125 1125 HOH HOH . G 5 HOH A 62 1126 1126 HOH HOH . G 5 HOH A 63 1129 1129 HOH HOH . G 5 HOH A 64 1130 1130 HOH HOH . G 5 HOH A 65 1132 1132 HOH HOH . G 5 HOH A 66 1136 1136 HOH HOH . G 5 HOH A 67 1140 1140 HOH HOH . G 5 HOH A 68 1151 1151 HOH HOH . G 5 HOH A 69 1153 1153 HOH HOH . G 5 HOH A 70 1155 1155 HOH HOH . G 5 HOH A 71 1156 1156 HOH HOH . G 5 HOH A 72 1158 1158 HOH HOH . G 5 HOH A 73 1159 1159 HOH HOH . G 5 HOH A 74 1160 1160 HOH HOH . G 5 HOH A 75 1162 1162 HOH HOH . G 5 HOH A 76 1163 1163 HOH HOH . G 5 HOH A 77 1164 1164 HOH HOH . G 5 HOH A 78 1165 1165 HOH HOH . G 5 HOH A 79 1167 1167 HOH HOH . G 5 HOH A 80 1168 1168 HOH HOH . G 5 HOH A 81 1170 1170 HOH HOH . G 5 HOH A 82 1171 1171 HOH HOH . G 5 HOH A 83 1174 1174 HOH HOH . G 5 HOH A 84 1175 1175 HOH HOH . G 5 HOH A 85 1176 1176 HOH HOH . G 5 HOH A 86 1181 1181 HOH HOH . G 5 HOH A 87 1182 1182 HOH HOH . G 5 HOH A 88 1184 1184 HOH HOH . G 5 HOH A 89 1185 1185 HOH HOH . G 5 HOH A 90 1186 1186 HOH HOH . G 5 HOH A 91 1187 1187 HOH HOH . G 5 HOH A 92 1188 1188 HOH HOH . G 5 HOH A 93 1189 1189 HOH HOH . G 5 HOH A 94 1190 1190 HOH HOH . G 5 HOH A 95 1191 1191 HOH HOH . G 5 HOH A 96 1194 1194 HOH HOH . G 5 HOH A 97 1195 1195 HOH HOH . G 5 HOH A 98 1197 1197 HOH HOH . G 5 HOH A 99 1198 1198 HOH HOH . G 5 HOH A 100 1199 1199 HOH HOH . G 5 HOH A 101 1200 1200 HOH HOH . G 5 HOH A 102 1204 1204 HOH HOH . G 5 HOH A 103 1206 1206 HOH HOH . G 5 HOH A 104 1207 1207 HOH HOH . G 5 HOH A 105 1208 1208 HOH HOH . G 5 HOH A 106 1209 1209 HOH HOH . G 5 HOH A 107 1212 1212 HOH HOH . G 5 HOH A 108 1213 1213 HOH HOH . G 5 HOH A 109 1214 1214 HOH HOH . G 5 HOH A 110 1216 1216 HOH HOH . G 5 HOH A 111 1217 1217 HOH HOH . G 5 HOH A 112 1218 1218 HOH HOH . G 5 HOH A 113 1219 1219 HOH HOH . G 5 HOH A 114 1222 1222 HOH HOH . G 5 HOH A 115 1223 1223 HOH HOH . G 5 HOH A 116 1225 1225 HOH HOH . G 5 HOH A 117 1226 1226 HOH HOH . G 5 HOH A 118 1228 1228 HOH HOH . G 5 HOH A 119 1231 1231 HOH HOH . G 5 HOH A 120 1234 1234 HOH HOH . G 5 HOH A 121 1235 1235 HOH HOH . G 5 HOH A 122 1238 1238 HOH HOH . G 5 HOH A 123 1239 1239 HOH HOH . G 5 HOH A 124 1240 1240 HOH HOH . G 5 HOH A 125 1241 1241 HOH HOH . G 5 HOH A 126 1242 1242 HOH HOH . G 5 HOH A 127 1243 1243 HOH HOH . G 5 HOH A 128 1245 1245 HOH HOH . G 5 HOH A 129 1251 1251 HOH HOH . G 5 HOH A 130 1260 1260 HOH HOH . G 5 HOH A 131 1261 1261 HOH HOH . G 5 HOH A 132 1262 1262 HOH HOH . G 5 HOH A 133 1280 1280 HOH HOH . G 5 HOH A 134 1282 1282 HOH HOH . G 5 HOH A 135 1284 1284 HOH HOH . G 5 HOH A 136 1285 1285 HOH HOH . G 5 HOH A 137 1286 1286 HOH HOH . G 5 HOH A 138 1290 1290 HOH HOH . G 5 HOH A 139 1291 1291 HOH HOH . G 5 HOH A 140 1292 1292 HOH HOH . G 5 HOH A 141 1293 1293 HOH HOH . H 5 HOH B 1 1007 1007 HOH HOH . H 5 HOH B 2 1011 1011 HOH HOH . H 5 HOH B 3 1012 1012 HOH HOH . H 5 HOH B 4 1017 1017 HOH HOH . H 5 HOH B 5 1018 1018 HOH HOH . H 5 HOH B 6 1023 1023 HOH HOH . H 5 HOH B 7 1024 1024 HOH HOH . H 5 HOH B 8 1025 1025 HOH HOH . H 5 HOH B 9 1029 1029 HOH HOH . H 5 HOH B 10 1031 1031 HOH HOH . H 5 HOH B 11 1033 1033 HOH HOH . H 5 HOH B 12 1034 1034 HOH HOH . H 5 HOH B 13 1036 1036 HOH HOH . H 5 HOH B 14 1037 1037 HOH HOH . H 5 HOH B 15 1038 1038 HOH HOH . H 5 HOH B 16 1044 1044 HOH HOH . H 5 HOH B 17 1046 1046 HOH HOH . H 5 HOH B 18 1049 1049 HOH HOH . H 5 HOH B 19 1050 1050 HOH HOH . H 5 HOH B 20 1052 1052 HOH HOH . H 5 HOH B 21 1053 1053 HOH HOH . H 5 HOH B 22 1055 1055 HOH HOH . H 5 HOH B 23 1056 1056 HOH HOH . H 5 HOH B 24 1057 1057 HOH HOH . H 5 HOH B 25 1059 1059 HOH HOH . H 5 HOH B 26 1060 1060 HOH HOH . H 5 HOH B 27 1064 1064 HOH HOH . H 5 HOH B 28 1067 1067 HOH HOH . H 5 HOH B 29 1068 1068 HOH HOH . H 5 HOH B 30 1069 1069 HOH HOH . H 5 HOH B 31 1070 1070 HOH HOH . H 5 HOH B 32 1071 1071 HOH HOH . H 5 HOH B 33 1073 1073 HOH HOH . H 5 HOH B 34 1075 1075 HOH HOH . H 5 HOH B 35 1076 1076 HOH HOH . H 5 HOH B 36 1078 1078 HOH HOH . H 5 HOH B 37 1082 1082 HOH HOH . H 5 HOH B 38 1086 1086 HOH HOH . H 5 HOH B 39 1091 1091 HOH HOH . H 5 HOH B 40 1094 1094 HOH HOH . H 5 HOH B 41 1095 1095 HOH HOH . H 5 HOH B 42 1099 1099 HOH HOH . H 5 HOH B 43 1101 1101 HOH HOH . H 5 HOH B 44 1102 1102 HOH HOH . H 5 HOH B 45 1110 1110 HOH HOH . H 5 HOH B 46 1111 1111 HOH HOH . H 5 HOH B 47 1112 1112 HOH HOH . H 5 HOH B 48 1113 1113 HOH HOH . H 5 HOH B 49 1116 1116 HOH HOH . H 5 HOH B 50 1118 1118 HOH HOH . H 5 HOH B 51 1120 1120 HOH HOH . H 5 HOH B 52 1121 1121 HOH HOH . H 5 HOH B 53 1124 1124 HOH HOH . H 5 HOH B 54 1127 1127 HOH HOH . H 5 HOH B 55 1128 1128 HOH HOH . H 5 HOH B 56 1133 1133 HOH HOH . H 5 HOH B 57 1141 1141 HOH HOH . H 5 HOH B 58 1142 1142 HOH HOH . H 5 HOH B 59 1147 1147 HOH HOH . H 5 HOH B 60 1152 1152 HOH HOH . H 5 HOH B 61 1161 1161 HOH HOH . H 5 HOH B 62 1166 1166 HOH HOH . H 5 HOH B 63 1169 1169 HOH HOH . H 5 HOH B 64 1172 1172 HOH HOH . H 5 HOH B 65 1173 1173 HOH HOH . H 5 HOH B 66 1177 1177 HOH HOH . H 5 HOH B 67 1178 1178 HOH HOH . H 5 HOH B 68 1179 1179 HOH HOH . H 5 HOH B 69 1180 1180 HOH HOH . H 5 HOH B 70 1183 1183 HOH HOH . H 5 HOH B 71 1192 1192 HOH HOH . H 5 HOH B 72 1196 1196 HOH HOH . H 5 HOH B 73 1201 1201 HOH HOH . H 5 HOH B 74 1202 1202 HOH HOH . H 5 HOH B 75 1203 1203 HOH HOH . H 5 HOH B 76 1205 1205 HOH HOH . H 5 HOH B 77 1210 1210 HOH HOH . H 5 HOH B 78 1211 1211 HOH HOH . H 5 HOH B 79 1215 1215 HOH HOH . H 5 HOH B 80 1227 1227 HOH HOH . H 5 HOH B 81 1229 1229 HOH HOH . H 5 HOH B 82 1236 1236 HOH HOH . H 5 HOH B 83 1237 1237 HOH HOH . H 5 HOH B 84 1244 1244 HOH HOH . H 5 HOH B 85 1248 1248 HOH HOH . H 5 HOH B 86 1253 1253 HOH HOH . H 5 HOH B 87 1264 1264 HOH HOH . H 5 HOH B 88 1265 1265 HOH HOH . H 5 HOH B 89 1266 1266 HOH HOH . H 5 HOH B 90 1267 1267 HOH HOH . H 5 HOH B 91 1269 1269 HOH HOH . H 5 HOH B 92 1270 1270 HOH HOH . H 5 HOH B 93 1271 1271 HOH HOH . H 5 HOH B 94 1273 1273 HOH HOH . H 5 HOH B 95 1274 1274 HOH HOH . H 5 HOH B 96 1276 1276 HOH HOH . H 5 HOH B 97 1278 1278 HOH HOH . H 5 HOH B 98 1283 1283 HOH HOH . H 5 HOH B 99 1287 1287 HOH HOH . H 5 HOH B 100 1289 1289 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CMO . . . D 4 11.364 -8.557 15.31 0.52 13.58 ? C CMO 199 A 1 HETATM 2 O O CMO . . . D 4 12.073 -7.682 15.264 0.52 14.8 ? O CMO 199 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 2 #