data_3GKY # _model_server_result.job_id jBNLPXJGpz6UzgL5fSIGFg _model_server_result.datetime_utc '2024-10-12 15:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 3GKY # _exptl.entry_id 3GKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GKY _cell.length_a 78.225 _cell.length_b 78.225 _cell.length_c 36.712 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.1125 67.744837 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -39.1125 67.744837 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 D NE2 HIS 10 D HIS 10 1_555 H ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 158 n y C1 C6 IPH sing 159 n y C1 O1 IPH sing 160 n n C2 C3 IPH sing 161 n y C2 H2 IPH sing 162 n n C3 C4 IPH doub 163 n y C3 H3 IPH sing 164 n n C4 C5 IPH sing 165 n y C4 H4 IPH sing 166 n n C5 C6 IPH doub 167 n y C5 H5 IPH sing 168 n n C6 H6 IPH sing 169 n n O1 HO1 IPH sing 170 n n # _atom_sites.entry_id 3GKY _atom_sites.fract_transf_matrix[1][1] 0.012784 _atom_sites.fract_transf_matrix[1][2] 0.007381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 31 31 ZN ZN . F 4 CL B 1 32 32 CL CL . G 5 IPH C 1 100 100 IPH IPH . H 3 ZN D 1 31 31 ZN ZN . I 4 CL D 1 32 32 CL CL . J 6 HOH A 1 22 22 HOH HOH . J 6 HOH A 2 23 23 HOH HOH . J 6 HOH A 3 24 24 HOH HOH . J 6 HOH A 4 27 27 HOH HOH . J 6 HOH A 5 36 36 HOH HOH . J 6 HOH A 6 55 55 HOH HOH . J 6 HOH A 7 58 58 HOH HOH . J 6 HOH A 8 59 59 HOH HOH . J 6 HOH A 9 63 63 HOH HOH . J 6 HOH A 10 65 65 HOH HOH . J 6 HOH A 11 68 68 HOH HOH . J 6 HOH A 12 70 70 HOH HOH . J 6 HOH A 13 75 75 HOH HOH . J 6 HOH A 14 80 80 HOH HOH . J 6 HOH A 15 83 83 HOH HOH . J 6 HOH A 16 85 85 HOH HOH . J 6 HOH A 17 86 86 HOH HOH . J 6 HOH A 18 88 88 HOH HOH . J 6 HOH A 19 91 91 HOH HOH . J 6 HOH A 20 94 94 HOH HOH . J 6 HOH A 21 95 95 HOH HOH . J 6 HOH A 22 98 98 HOH HOH . J 6 HOH A 23 103 103 HOH HOH . J 6 HOH A 24 106 106 HOH HOH . J 6 HOH A 25 108 108 HOH HOH . J 6 HOH A 26 109 109 HOH HOH . J 6 HOH A 27 117 117 HOH HOH . J 6 HOH A 28 119 119 HOH HOH . J 6 HOH A 29 122 122 HOH HOH . J 6 HOH A 30 125 125 HOH HOH . K 6 HOH B 1 33 33 HOH HOH . K 6 HOH B 2 34 34 HOH HOH . K 6 HOH B 3 35 35 HOH HOH . K 6 HOH B 4 36 36 HOH HOH . K 6 HOH B 5 37 37 HOH HOH . K 6 HOH B 6 38 38 HOH HOH . K 6 HOH B 7 39 39 HOH HOH . K 6 HOH B 8 40 40 HOH HOH . K 6 HOH B 9 41 41 HOH HOH . K 6 HOH B 10 42 42 HOH HOH . K 6 HOH B 11 43 43 HOH HOH . K 6 HOH B 12 44 44 HOH HOH . K 6 HOH B 13 45 45 HOH HOH . K 6 HOH B 14 46 46 HOH HOH . K 6 HOH B 15 47 47 HOH HOH . K 6 HOH B 16 48 48 HOH HOH . K 6 HOH B 17 49 49 HOH HOH . K 6 HOH B 18 50 50 HOH HOH . K 6 HOH B 19 51 51 HOH HOH . K 6 HOH B 20 52 52 HOH HOH . K 6 HOH B 21 53 53 HOH HOH . K 6 HOH B 22 54 54 HOH HOH . K 6 HOH B 23 56 56 HOH HOH . K 6 HOH B 24 71 71 HOH HOH . K 6 HOH B 25 72 72 HOH HOH . K 6 HOH B 26 76 76 HOH HOH . K 6 HOH B 27 78 78 HOH HOH . K 6 HOH B 28 84 84 HOH HOH . K 6 HOH B 29 87 87 HOH HOH . K 6 HOH B 30 89 89 HOH HOH . K 6 HOH B 31 93 93 HOH HOH . K 6 HOH B 32 99 99 HOH HOH . K 6 HOH B 33 100 100 HOH HOH . K 6 HOH B 34 107 107 HOH HOH . K 6 HOH B 35 116 116 HOH HOH . K 6 HOH B 36 120 120 HOH HOH . K 6 HOH B 37 124 124 HOH HOH . L 6 HOH C 1 22 22 HOH HOH . L 6 HOH C 2 23 23 HOH HOH . L 6 HOH C 3 26 26 HOH HOH . L 6 HOH C 4 32 32 HOH HOH . L 6 HOH C 5 40 40 HOH HOH . L 6 HOH C 6 43 43 HOH HOH . L 6 HOH C 7 47 47 HOH HOH . L 6 HOH C 8 49 49 HOH HOH . L 6 HOH C 9 50 50 HOH HOH . L 6 HOH C 10 51 51 HOH HOH . L 6 HOH C 11 52 52 HOH HOH . L 6 HOH C 12 62 62 HOH HOH . L 6 HOH C 13 64 64 HOH HOH . L 6 HOH C 14 67 67 HOH HOH . L 6 HOH C 15 73 73 HOH HOH . L 6 HOH C 16 77 77 HOH HOH . L 6 HOH C 17 79 79 HOH HOH . L 6 HOH C 18 81 81 HOH HOH . L 6 HOH C 19 82 82 HOH HOH . L 6 HOH C 20 92 92 HOH HOH . L 6 HOH C 21 96 96 HOH HOH . L 6 HOH C 22 97 97 HOH HOH . L 6 HOH C 23 104 104 HOH HOH . L 6 HOH C 24 110 110 HOH HOH . L 6 HOH C 25 118 118 HOH HOH . L 6 HOH C 26 123 123 HOH HOH . M 6 HOH D 1 33 33 HOH HOH . M 6 HOH D 2 34 34 HOH HOH . M 6 HOH D 3 35 35 HOH HOH . M 6 HOH D 4 36 36 HOH HOH . M 6 HOH D 5 37 37 HOH HOH . M 6 HOH D 6 38 38 HOH HOH . M 6 HOH D 7 39 39 HOH HOH . M 6 HOH D 8 40 40 HOH HOH . M 6 HOH D 9 41 41 HOH HOH . M 6 HOH D 10 42 42 HOH HOH . M 6 HOH D 11 43 43 HOH HOH . M 6 HOH D 12 44 44 HOH HOH . M 6 HOH D 13 45 45 HOH HOH . M 6 HOH D 14 46 46 HOH HOH . M 6 HOH D 15 47 47 HOH HOH . M 6 HOH D 16 48 48 HOH HOH . M 6 HOH D 17 57 57 HOH HOH . M 6 HOH D 18 60 60 HOH HOH . M 6 HOH D 19 61 61 HOH HOH . M 6 HOH D 20 66 66 HOH HOH . M 6 HOH D 21 69 69 HOH HOH . M 6 HOH D 22 74 74 HOH HOH . M 6 HOH D 23 90 90 HOH HOH . M 6 HOH D 24 101 101 HOH HOH . M 6 HOH D 25 102 102 HOH HOH . M 6 HOH D 26 105 105 HOH HOH . M 6 HOH D 27 111 111 HOH HOH . M 6 HOH D 28 112 112 HOH HOH . M 6 HOH D 29 113 113 HOH HOH . M 6 HOH D 30 114 114 HOH HOH . M 6 HOH D 31 115 115 HOH HOH . M 6 HOH D 32 121 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . G 5 -9.225 50.188 9.779 1 37.86 ? C1 IPH 100 C 1 HETATM 2 C C2 IPH . . . G 5 -7.843 49.812 9.842 1 38.83 ? C2 IPH 100 C 1 HETATM 3 C C3 IPH . . . G 5 -7.22 49.484 8.582 1 37.99 ? C3 IPH 100 C 1 HETATM 4 C C4 IPH . . . G 5 -7.97 49.542 7.376 1 37.88 ? C4 IPH 100 C 1 HETATM 5 C C5 IPH . . . G 5 -9.335 49.919 7.36 1 38.52 ? C5 IPH 100 C 1 HETATM 6 C C6 IPH . . . G 5 -10.001 50.258 8.611 1 37.09 ? C6 IPH 100 C 1 HETATM 7 O O1 IPH . . . G 5 -9.862 50.51 10.963 1 35.12 ? O1 IPH 100 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #