data_3GL5
#
_model_server_result.job_id            704efc63mhOa0foWxC7LRQ 
_model_server_result.datetime_utc      '2025-04-23 02:10:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    3GL5 
#
_exptl.entry_id    3GL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GL5 
_cell.length_a            60.36 
_cell.length_b            60.36 
_cell.length_c            132.761 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_646 y+1,x-1,-z+1 0 1 0 1 0 0 0 0 -1 60.36 -60.36 132.761 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 11 1_555 A SG CYS 16 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
disulf ? disulf2 A SG CYS 229 A CYS 227 1_555 A SG CYS 234 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
covale ? covale1 A C HIS 2 A HIS 0 1_555 A N MSE 3 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale2 A C MSE 3 A MSE 1 1_555 A N ARG 4 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C THR 59 A THR 57 1_555 A N MSE 60 A MSE 58 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C THR 59 A THR 57 1_555 A N MSE 60 A MSE 58 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C MSE 60 A MSE 58 1_555 A N LEU 61 A LEU 59 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 60 A MSE 58 1_555 A N LEU 61 A LEU 59 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C GLY 66 A GLY 64 1_555 A N MSE 67 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C MSE 67 A MSE 65 1_555 A N SER 68 A SER 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
metalc ? metalc1 A O GLY 126 A GLY 124 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A O ASN 127 A ASN 125 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc3 A O ASP 130 A ASP 128 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc4 A O ARG 132 A ARG 130 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc5 D O HOH . A HOH 241 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc6 B NA NA . A NA 301 1_555 D O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     3GL5 
_atom_sites.fract_transf_matrix[1][1]    0.016567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016567 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 301 NA NA . 
C 3 ACT A 1 302 302 ACT ACT . 
D 4 HOH A 1 238 1 HOH HOH . 
D 4 HOH A 2 239 2 HOH HOH . 
D 4 HOH A 3 240 3 HOH HOH . 
D 4 HOH A 4 241 4 HOH HOH . 
D 4 HOH A 5 242 5 HOH HOH . 
D 4 HOH A 6 243 6 HOH HOH . 
D 4 HOH A 7 244 7 HOH HOH . 
D 4 HOH A 8 245 8 HOH HOH . 
D 4 HOH A 9 246 9 HOH HOH . 
D 4 HOH A 10 247 10 HOH HOH . 
D 4 HOH A 11 248 11 HOH HOH . 
D 4 HOH A 12 249 12 HOH HOH . 
D 4 HOH A 13 250 13 HOH HOH . 
D 4 HOH A 14 251 14 HOH HOH . 
D 4 HOH A 15 252 15 HOH HOH . 
D 4 HOH A 16 253 16 HOH HOH . 
D 4 HOH A 17 254 17 HOH HOH . 
D 4 HOH A 18 255 18 HOH HOH . 
D 4 HOH A 19 256 19 HOH HOH . 
D 4 HOH A 20 257 20 HOH HOH . 
D 4 HOH A 21 258 21 HOH HOH . 
D 4 HOH A 22 259 22 HOH HOH . 
D 4 HOH A 23 260 23 HOH HOH . 
D 4 HOH A 24 261 24 HOH HOH . 
D 4 HOH A 25 262 25 HOH HOH . 
D 4 HOH A 26 263 26 HOH HOH . 
D 4 HOH A 27 264 27 HOH HOH . 
D 4 HOH A 28 265 28 HOH HOH . 
D 4 HOH A 29 266 29 HOH HOH . 
D 4 HOH A 30 267 30 HOH HOH . 
D 4 HOH A 31 268 31 HOH HOH . 
D 4 HOH A 32 269 32 HOH HOH . 
D 4 HOH A 33 270 33 HOH HOH . 
D 4 HOH A 34 271 34 HOH HOH . 
D 4 HOH A 35 272 35 HOH HOH . 
D 4 HOH A 36 273 36 HOH HOH . 
D 4 HOH A 37 274 37 HOH HOH . 
D 4 HOH A 38 275 38 HOH HOH . 
D 4 HOH A 39 276 39 HOH HOH . 
D 4 HOH A 40 277 40 HOH HOH . 
D 4 HOH A 41 278 41 HOH HOH . 
D 4 HOH A 42 279 42 HOH HOH . 
D 4 HOH A 43 280 43 HOH HOH . 
D 4 HOH A 44 281 44 HOH HOH . 
D 4 HOH A 45 282 45 HOH HOH . 
D 4 HOH A 46 283 46 HOH HOH . 
D 4 HOH A 47 284 47 HOH HOH . 
D 4 HOH A 48 285 48 HOH HOH . 
D 4 HOH A 49 286 49 HOH HOH . 
D 4 HOH A 50 287 50 HOH HOH . 
D 4 HOH A 51 288 51 HOH HOH . 
D 4 HOH A 52 289 52 HOH HOH . 
D 4 HOH A 53 290 53 HOH HOH . 
D 4 HOH A 54 291 54 HOH HOH . 
D 4 HOH A 55 292 55 HOH HOH . 
D 4 HOH A 56 293 56 HOH HOH . 
D 4 HOH A 57 294 57 HOH HOH . 
D 4 HOH A 58 295 58 HOH HOH . 
D 4 HOH A 59 296 59 HOH HOH . 
D 4 HOH A 60 297 60 HOH HOH . 
D 4 HOH A 61 298 61 HOH HOH . 
D 4 HOH A 62 299 62 HOH HOH . 
D 4 HOH A 63 300 63 HOH HOH . 
D 4 HOH A 64 303 64 HOH HOH . 
D 4 HOH A 65 304 65 HOH HOH . 
D 4 HOH A 66 305 66 HOH HOH . 
D 4 HOH A 67 306 67 HOH HOH . 
D 4 HOH A 68 307 68 HOH HOH . 
D 4 HOH A 69 308 69 HOH HOH . 
D 4 HOH A 70 309 70 HOH HOH . 
D 4 HOH A 71 310 71 HOH HOH . 
D 4 HOH A 72 311 72 HOH HOH . 
D 4 HOH A 73 312 73 HOH HOH . 
D 4 HOH A 74 313 74 HOH HOH . 
D 4 HOH A 75 314 75 HOH HOH . 
D 4 HOH A 76 315 76 HOH HOH . 
D 4 HOH A 77 316 77 HOH HOH . 
D 4 HOH A 78 317 78 HOH HOH . 
D 4 HOH A 79 318 79 HOH HOH . 
D 4 HOH A 80 319 80 HOH HOH . 
D 4 HOH A 81 320 81 HOH HOH . 
D 4 HOH A 82 321 82 HOH HOH . 
D 4 HOH A 83 322 83 HOH HOH . 
D 4 HOH A 84 323 84 HOH HOH . 
D 4 HOH A 85 324 85 HOH HOH . 
D 4 HOH A 86 325 86 HOH HOH . 
D 4 HOH A 87 326 87 HOH HOH . 
D 4 HOH A 88 327 88 HOH HOH . 
D 4 HOH A 89 328 89 HOH HOH . 
D 4 HOH A 90 329 90 HOH HOH . 
D 4 HOH A 91 330 91 HOH HOH . 
D 4 HOH A 92 331 92 HOH HOH . 
D 4 HOH A 93 332 93 HOH HOH . 
D 4 HOH A 94 333 94 HOH HOH . 
D 4 HOH A 95 334 95 HOH HOH . 
D 4 HOH A 96 335 96 HOH HOH . 
D 4 HOH A 97 336 97 HOH HOH . 
D 4 HOH A 98 337 98 HOH HOH . 
D 4 HOH A 99 338 99 HOH HOH . 
D 4 HOH A 100 339 100 HOH HOH . 
D 4 HOH A 101 340 101 HOH HOH . 
D 4 HOH A 102 341 102 HOH HOH . 
D 4 HOH A 103 342 103 HOH HOH . 
D 4 HOH A 104 343 104 HOH HOH . 
D 4 HOH A 105 344 105 HOH HOH . 
D 4 HOH A 106 345 106 HOH HOH . 
D 4 HOH A 107 346 107 HOH HOH . 
D 4 HOH A 108 347 108 HOH HOH . 
D 4 HOH A 109 348 109 HOH HOH . 
D 4 HOH A 110 349 110 HOH HOH . 
D 4 HOH A 111 350 111 HOH HOH . 
D 4 HOH A 112 351 112 HOH HOH . 
D 4 HOH A 113 352 113 HOH HOH . 
D 4 HOH A 114 353 114 HOH HOH . 
D 4 HOH A 115 354 115 HOH HOH . 
D 4 HOH A 116 355 116 HOH HOH . 
D 4 HOH A 117 356 117 HOH HOH . 
D 4 HOH A 118 357 118 HOH HOH . 
D 4 HOH A 119 358 119 HOH HOH . 
D 4 HOH A 120 359 120 HOH HOH . 
D 4 HOH A 121 360 121 HOH HOH . 
D 4 HOH A 122 361 122 HOH HOH . 
D 4 HOH A 123 362 123 HOH HOH . 
D 4 HOH A 124 363 124 HOH HOH . 
D 4 HOH A 125 364 125 HOH HOH . 
D 4 HOH A 126 365 126 HOH HOH . 
D 4 HOH A 127 366 127 HOH HOH . 
D 4 HOH A 128 367 128 HOH HOH . 
D 4 HOH A 129 368 129 HOH HOH . 
D 4 HOH A 130 369 130 HOH HOH . 
D 4 HOH A 131 370 131 HOH HOH . 
D 4 HOH A 132 371 132 HOH HOH . 
D 4 HOH A 133 372 133 HOH HOH . 
D 4 HOH A 134 373 134 HOH HOH . 
D 4 HOH A 135 374 135 HOH HOH . 
D 4 HOH A 136 375 136 HOH HOH . 
D 4 HOH A 137 376 137 HOH HOH . 
D 4 HOH A 138 377 138 HOH HOH . 
D 4 HOH A 139 378 139 HOH HOH . 
D 4 HOH A 140 379 140 HOH HOH . 
D 4 HOH A 141 380 141 HOH HOH . 
D 4 HOH A 142 381 142 HOH HOH . 
D 4 HOH A 143 382 143 HOH HOH . 
D 4 HOH A 144 383 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . C 3 31.382 10.357 69.312 1 62.09 ? C ACT 302 A 1 
HETATM 2 O O ACT . . . C 3 32.354 10.811 68.68 1 62.7 ? O ACT 302 A 1 
HETATM 3 O OXT ACT . . . C 3 31.261 10.847 70.439 1 60.82 ? OXT ACT 302 A 1 
HETATM 4 C CH3 ACT . . . C 3 30.45 9.319 68.732 1 62.57 ? CH3 ACT 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#