data_3GLR # _model_server_result.job_id 47hNYqlhT2cAH-naeZ4nkg _model_server_result.datetime_utc '2024-10-18 08:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3glr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5}' # _entry.id 3GLR # _exptl.entry_id 3GLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GLR _cell.length_a 78.19 _cell.length_b 129.063 _cell.length_c 77.899 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 78.19 0 -38.9495 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 4 B GLY 641 1_555 B N ALY 5 B ALY 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 B C ALY 5 B ALY 642 1_555 B N VAL 6 B VAL 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 142 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A SG CYS 145 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 166 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 169 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 3GLR _atom_sites.fract_transf_matrix[1][1] 0.012789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 4 SO4 A 1 3 3 SO4 SO4 . E 5 BCT A 1 4 4 BCT BCT . F 6 GOL A 1 5 5 GOL GOL . G 4 SO4 B 1 2 2 SO4 SO4 . H 7 HOH A 1 2 2 HOH HOH . H 7 HOH A 2 6 6 HOH HOH . H 7 HOH A 3 8 8 HOH HOH . H 7 HOH A 4 10 10 HOH HOH . H 7 HOH A 5 11 11 HOH HOH . H 7 HOH A 6 12 12 HOH HOH . H 7 HOH A 7 13 13 HOH HOH . H 7 HOH A 8 14 14 HOH HOH . H 7 HOH A 9 16 16 HOH HOH . H 7 HOH A 10 17 17 HOH HOH . H 7 HOH A 11 18 18 HOH HOH . H 7 HOH A 12 20 20 HOH HOH . H 7 HOH A 13 21 21 HOH HOH . H 7 HOH A 14 22 22 HOH HOH . H 7 HOH A 15 23 23 HOH HOH . H 7 HOH A 16 24 24 HOH HOH . H 7 HOH A 17 25 25 HOH HOH . H 7 HOH A 18 26 26 HOH HOH . H 7 HOH A 19 28 28 HOH HOH . H 7 HOH A 20 29 29 HOH HOH . H 7 HOH A 21 30 30 HOH HOH . H 7 HOH A 22 31 31 HOH HOH . H 7 HOH A 23 32 32 HOH HOH . H 7 HOH A 24 33 33 HOH HOH . H 7 HOH A 25 34 34 HOH HOH . H 7 HOH A 26 36 36 HOH HOH . H 7 HOH A 27 37 37 HOH HOH . H 7 HOH A 28 38 38 HOH HOH . H 7 HOH A 29 39 39 HOH HOH . H 7 HOH A 30 40 40 HOH HOH . H 7 HOH A 31 41 41 HOH HOH . H 7 HOH A 32 42 42 HOH HOH . H 7 HOH A 33 43 43 HOH HOH . H 7 HOH A 34 44 44 HOH HOH . H 7 HOH A 35 45 45 HOH HOH . H 7 HOH A 36 46 46 HOH HOH . H 7 HOH A 37 47 47 HOH HOH . H 7 HOH A 38 49 49 HOH HOH . H 7 HOH A 39 50 50 HOH HOH . H 7 HOH A 40 51 51 HOH HOH . H 7 HOH A 41 52 52 HOH HOH . H 7 HOH A 42 54 54 HOH HOH . H 7 HOH A 43 55 55 HOH HOH . H 7 HOH A 44 56 56 HOH HOH . H 7 HOH A 45 57 57 HOH HOH . H 7 HOH A 46 58 58 HOH HOH . H 7 HOH A 47 59 59 HOH HOH . H 7 HOH A 48 60 60 HOH HOH . H 7 HOH A 49 61 61 HOH HOH . H 7 HOH A 50 62 62 HOH HOH . H 7 HOH A 51 63 63 HOH HOH . H 7 HOH A 52 64 64 HOH HOH . H 7 HOH A 53 66 66 HOH HOH . H 7 HOH A 54 67 67 HOH HOH . H 7 HOH A 55 68 68 HOH HOH . H 7 HOH A 56 70 70 HOH HOH . H 7 HOH A 57 71 71 HOH HOH . H 7 HOH A 58 72 72 HOH HOH . H 7 HOH A 59 73 73 HOH HOH . H 7 HOH A 60 74 74 HOH HOH . H 7 HOH A 61 75 75 HOH HOH . H 7 HOH A 62 76 76 HOH HOH . H 7 HOH A 63 77 77 HOH HOH . H 7 HOH A 64 78 78 HOH HOH . H 7 HOH A 65 80 80 HOH HOH . H 7 HOH A 66 81 81 HOH HOH . H 7 HOH A 67 83 83 HOH HOH . H 7 HOH A 68 85 85 HOH HOH . H 7 HOH A 69 86 86 HOH HOH . H 7 HOH A 70 87 87 HOH HOH . H 7 HOH A 71 88 88 HOH HOH . H 7 HOH A 72 89 89 HOH HOH . H 7 HOH A 73 90 90 HOH HOH . H 7 HOH A 74 91 91 HOH HOH . H 7 HOH A 75 93 93 HOH HOH . H 7 HOH A 76 94 94 HOH HOH . H 7 HOH A 77 95 95 HOH HOH . H 7 HOH A 78 96 96 HOH HOH . H 7 HOH A 79 97 97 HOH HOH . H 7 HOH A 80 98 98 HOH HOH . H 7 HOH A 81 99 99 HOH HOH . H 7 HOH A 82 101 101 HOH HOH . H 7 HOH A 83 102 102 HOH HOH . H 7 HOH A 84 103 103 HOH HOH . H 7 HOH A 85 105 105 HOH HOH . H 7 HOH A 86 106 106 HOH HOH . H 7 HOH A 87 107 107 HOH HOH . H 7 HOH A 88 110 110 HOH HOH . H 7 HOH A 89 112 112 HOH HOH . H 7 HOH A 90 114 114 HOH HOH . H 7 HOH A 91 400 400 HOH HOH . H 7 HOH A 92 401 401 HOH HOH . H 7 HOH A 93 402 402 HOH HOH . H 7 HOH A 94 403 403 HOH HOH . H 7 HOH A 95 404 404 HOH HOH . H 7 HOH A 96 405 405 HOH HOH . H 7 HOH A 97 406 406 HOH HOH . H 7 HOH A 98 407 407 HOH HOH . H 7 HOH A 99 408 408 HOH HOH . H 7 HOH A 100 409 409 HOH HOH . H 7 HOH A 101 410 410 HOH HOH . H 7 HOH A 102 411 411 HOH HOH . H 7 HOH A 103 412 412 HOH HOH . H 7 HOH A 104 413 413 HOH HOH . H 7 HOH A 105 414 414 HOH HOH . H 7 HOH A 106 415 415 HOH HOH . H 7 HOH A 107 416 416 HOH HOH . H 7 HOH A 108 417 417 HOH HOH . H 7 HOH A 109 418 418 HOH HOH . H 7 HOH A 110 419 419 HOH HOH . H 7 HOH A 111 420 420 HOH HOH . H 7 HOH A 112 421 421 HOH HOH . H 7 HOH A 113 422 422 HOH HOH . H 7 HOH A 114 423 423 HOH HOH . H 7 HOH A 115 424 424 HOH HOH . H 7 HOH A 116 425 425 HOH HOH . H 7 HOH A 117 426 426 HOH HOH . H 7 HOH A 118 427 427 HOH HOH . H 7 HOH A 119 428 428 HOH HOH . H 7 HOH A 120 429 429 HOH HOH . H 7 HOH A 121 430 430 HOH HOH . H 7 HOH A 122 431 431 HOH HOH . H 7 HOH A 123 432 432 HOH HOH . H 7 HOH A 124 433 433 HOH HOH . H 7 HOH A 125 434 434 HOH HOH . H 7 HOH A 126 435 435 HOH HOH . H 7 HOH A 127 436 436 HOH HOH . H 7 HOH A 128 437 437 HOH HOH . H 7 HOH A 129 438 438 HOH HOH . H 7 HOH A 130 439 439 HOH HOH . H 7 HOH A 131 440 440 HOH HOH . H 7 HOH A 132 441 441 HOH HOH . H 7 HOH A 133 442 442 HOH HOH . H 7 HOH A 134 443 443 HOH HOH . H 7 HOH A 135 444 444 HOH HOH . H 7 HOH A 136 445 445 HOH HOH . H 7 HOH A 137 446 446 HOH HOH . H 7 HOH A 138 447 447 HOH HOH . H 7 HOH A 139 448 448 HOH HOH . H 7 HOH A 140 449 449 HOH HOH . H 7 HOH A 141 450 450 HOH HOH . H 7 HOH A 142 451 451 HOH HOH . H 7 HOH A 143 452 452 HOH HOH . H 7 HOH A 144 453 453 HOH HOH . H 7 HOH A 145 454 454 HOH HOH . H 7 HOH A 146 455 455 HOH HOH . H 7 HOH A 147 456 456 HOH HOH . H 7 HOH A 148 457 457 HOH HOH . H 7 HOH A 149 458 458 HOH HOH . H 7 HOH A 150 459 459 HOH HOH . H 7 HOH A 151 460 460 HOH HOH . H 7 HOH A 152 461 461 HOH HOH . H 7 HOH A 153 462 462 HOH HOH . H 7 HOH A 154 463 463 HOH HOH . H 7 HOH A 155 464 464 HOH HOH . H 7 HOH A 156 465 465 HOH HOH . H 7 HOH A 157 466 466 HOH HOH . H 7 HOH A 158 467 467 HOH HOH . H 7 HOH A 159 468 468 HOH HOH . H 7 HOH A 160 469 469 HOH HOH . H 7 HOH A 161 470 470 HOH HOH . H 7 HOH A 162 471 471 HOH HOH . H 7 HOH A 163 472 472 HOH HOH . H 7 HOH A 164 473 473 HOH HOH . H 7 HOH A 165 474 474 HOH HOH . H 7 HOH A 166 475 475 HOH HOH . H 7 HOH A 167 476 476 HOH HOH . H 7 HOH A 168 477 477 HOH HOH . H 7 HOH A 169 478 478 HOH HOH . H 7 HOH A 170 479 479 HOH HOH . H 7 HOH A 171 480 480 HOH HOH . H 7 HOH A 172 481 481 HOH HOH . H 7 HOH A 173 482 482 HOH HOH . H 7 HOH A 174 483 483 HOH HOH . H 7 HOH A 175 484 484 HOH HOH . H 7 HOH A 176 485 485 HOH HOH . H 7 HOH A 177 486 486 HOH HOH . H 7 HOH A 178 487 487 HOH HOH . H 7 HOH A 179 488 488 HOH HOH . H 7 HOH A 180 489 489 HOH HOH . H 7 HOH A 181 490 490 HOH HOH . H 7 HOH A 182 491 491 HOH HOH . H 7 HOH A 183 492 492 HOH HOH . H 7 HOH A 184 493 493 HOH HOH . H 7 HOH A 185 494 494 HOH HOH . H 7 HOH A 186 495 495 HOH HOH . H 7 HOH A 187 496 496 HOH HOH . H 7 HOH A 188 497 497 HOH HOH . H 7 HOH A 189 498 498 HOH HOH . H 7 HOH A 190 499 499 HOH HOH . H 7 HOH A 191 500 500 HOH HOH . H 7 HOH A 192 501 501 HOH HOH . H 7 HOH A 193 502 502 HOH HOH . H 7 HOH A 194 503 503 HOH HOH . H 7 HOH A 195 504 504 HOH HOH . H 7 HOH A 196 505 505 HOH HOH . H 7 HOH A 197 506 506 HOH HOH . H 7 HOH A 198 507 507 HOH HOH . H 7 HOH A 199 508 508 HOH HOH . H 7 HOH A 200 509 509 HOH HOH . H 7 HOH A 201 510 510 HOH HOH . H 7 HOH A 202 511 511 HOH HOH . H 7 HOH A 203 512 512 HOH HOH . H 7 HOH A 204 513 513 HOH HOH . H 7 HOH A 205 514 514 HOH HOH . H 7 HOH A 206 516 516 HOH HOH . H 7 HOH A 207 517 517 HOH HOH . H 7 HOH A 208 518 518 HOH HOH . H 7 HOH A 209 519 519 HOH HOH . H 7 HOH A 210 520 520 HOH HOH . H 7 HOH A 211 521 521 HOH HOH . H 7 HOH A 212 522 522 HOH HOH . H 7 HOH A 213 523 523 HOH HOH . H 7 HOH A 214 524 524 HOH HOH . H 7 HOH A 215 525 525 HOH HOH . I 7 HOH B 1 3 3 HOH HOH . I 7 HOH B 2 53 53 HOH HOH . I 7 HOH B 3 100 100 HOH HOH . I 7 HOH B 4 176 176 HOH HOH . I 7 HOH B 5 187 187 HOH HOH . I 7 HOH B 6 199 199 HOH HOH . I 7 HOH B 7 242 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 28.321 5.329 -1.213 1 55.49 ? C1 GOL 5 A 1 HETATM 2 O O1 GOL . . . F 6 28.061 5.055 -2.571 1 55.92 ? O1 GOL 5 A 1 HETATM 3 C C2 GOL . . . F 6 27.008 5.752 -0.57 1 55.19 ? C2 GOL 5 A 1 HETATM 4 O O2 GOL . . . F 6 25.945 5.026 -1.154 1 54.04 ? O2 GOL 5 A 1 HETATM 5 C C3 GOL . . . F 6 27.065 5.46 0.918 1 55.72 ? C3 GOL 5 A 1 HETATM 6 O O3 GOL . . . F 6 27.384 6.655 1.591 1 56.37 ? O3 GOL 5 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #