data_3GM0 # _model_server_result.job_id JPy1GqxjYFnbtrWoktR24w _model_server_result.datetime_utc '2024-11-05 23:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 3GM0 # _exptl.entry_id 3GM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.242 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-(1,3-benzodioxol-5-yl)-N-methylpropan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.97 _cell.angle_gamma 90 _cell.entry_id 3GM0 _cell.length_a 34.72 _cell.length_b 64.806 _cell.length_c 48.322 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 163 A CYS 163 1_555 A SG CYS 229 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C11 H15 N O2' _chem_comp.formula_weight 193.242 _chem_comp.id B41 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-(1,3-benzodioxol-5-yl)-N-methylpropan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3,4 methylenedioxy-n-methylamphetamine;MDMA;Ecstasy' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 CT B41 sing 70 n n O1 CE1 B41 sing 71 n n CT O2 B41 sing 72 n n O2 CZ B41 sing 73 n n CM N B41 sing 74 n n N CA B41 sing 75 n n N HN B41 sing 76 n n C CA B41 sing 77 n n CA CB B41 sing 78 n n CA HA B41 sing 79 n n C H B41 sing 80 n n C HB B41 sing 81 n n C HC B41 sing 82 n n CB CG B41 sing 83 n n CB HBA B41 sing 84 n n CB HBB B41 sing 85 n n CD1 CG B41 doub 86 n y CG CD2 B41 sing 87 n y CD1 CE1 B41 sing 88 n y CD1 HD1 B41 sing 89 n n CD2 CE2 B41 doub 90 n y CD2 HD2 B41 sing 91 n n CE1 CZ B41 doub 92 n y CZ CE2 B41 sing 93 n y CE2 HE2 B41 sing 94 n n CM HM B41 sing 95 n n CM HMA B41 sing 96 n n CM HMB B41 sing 97 n n CT HT B41 sing 98 n n CT HTA B41 sing 99 n n # _atom_sites.entry_id 3GM0 _atom_sites.fract_transf_matrix[1][1] 0.028802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B41 A 1 600 600 B41 B41 . C 3 HOH A 1 258 1 HOH HOH . C 3 HOH A 2 259 2 HOH HOH . C 3 HOH A 3 260 3 HOH HOH . C 3 HOH A 4 261 4 HOH HOH . C 3 HOH A 5 262 5 HOH HOH . C 3 HOH A 6 263 6 HOH HOH . C 3 HOH A 7 264 7 HOH HOH . C 3 HOH A 8 265 8 HOH HOH . C 3 HOH A 9 266 9 HOH HOH . C 3 HOH A 10 267 10 HOH HOH . C 3 HOH A 11 268 11 HOH HOH . C 3 HOH A 12 269 12 HOH HOH . C 3 HOH A 13 270 13 HOH HOH . C 3 HOH A 14 271 14 HOH HOH . C 3 HOH A 15 272 15 HOH HOH . C 3 HOH A 16 273 16 HOH HOH . C 3 HOH A 17 274 17 HOH HOH . C 3 HOH A 18 275 18 HOH HOH . C 3 HOH A 19 276 19 HOH HOH . C 3 HOH A 20 277 20 HOH HOH . C 3 HOH A 21 278 21 HOH HOH . C 3 HOH A 22 279 22 HOH HOH . C 3 HOH A 23 280 23 HOH HOH . C 3 HOH A 24 281 24 HOH HOH . C 3 HOH A 25 282 25 HOH HOH . C 3 HOH A 26 283 26 HOH HOH . C 3 HOH A 27 284 27 HOH HOH . C 3 HOH A 28 285 28 HOH HOH . C 3 HOH A 29 286 29 HOH HOH . C 3 HOH A 30 287 30 HOH HOH . C 3 HOH A 31 288 31 HOH HOH . C 3 HOH A 32 289 32 HOH HOH . C 3 HOH A 33 290 33 HOH HOH . C 3 HOH A 34 291 34 HOH HOH . C 3 HOH A 35 292 35 HOH HOH . C 3 HOH A 36 293 36 HOH HOH . C 3 HOH A 37 294 37 HOH HOH . C 3 HOH A 38 295 38 HOH HOH . C 3 HOH A 39 296 39 HOH HOH . C 3 HOH A 40 297 40 HOH HOH . C 3 HOH A 41 298 41 HOH HOH . C 3 HOH A 42 299 42 HOH HOH . C 3 HOH A 43 300 43 HOH HOH . C 3 HOH A 44 301 44 HOH HOH . C 3 HOH A 45 302 45 HOH HOH . C 3 HOH A 46 303 46 HOH HOH . C 3 HOH A 47 304 47 HOH HOH . C 3 HOH A 48 305 48 HOH HOH . C 3 HOH A 49 306 49 HOH HOH . C 3 HOH A 50 307 50 HOH HOH . C 3 HOH A 51 308 51 HOH HOH . C 3 HOH A 52 309 52 HOH HOH . C 3 HOH A 53 310 53 HOH HOH . C 3 HOH A 54 311 54 HOH HOH . C 3 HOH A 55 312 55 HOH HOH . C 3 HOH A 56 313 56 HOH HOH . C 3 HOH A 57 314 57 HOH HOH . C 3 HOH A 58 315 58 HOH HOH . C 3 HOH A 59 316 59 HOH HOH . C 3 HOH A 60 317 60 HOH HOH . C 3 HOH A 61 318 61 HOH HOH . C 3 HOH A 62 319 62 HOH HOH . C 3 HOH A 63 320 63 HOH HOH . C 3 HOH A 64 321 64 HOH HOH . C 3 HOH A 65 322 65 HOH HOH . C 3 HOH A 66 323 66 HOH HOH . C 3 HOH A 67 324 67 HOH HOH . C 3 HOH A 68 325 68 HOH HOH . C 3 HOH A 69 326 69 HOH HOH . C 3 HOH A 70 327 70 HOH HOH . C 3 HOH A 71 328 71 HOH HOH . C 3 HOH A 72 329 72 HOH HOH . C 3 HOH A 73 330 73 HOH HOH . C 3 HOH A 74 331 74 HOH HOH . C 3 HOH A 75 332 75 HOH HOH . C 3 HOH A 76 333 76 HOH HOH . C 3 HOH A 77 334 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B41 . . . B 2 -7.834 -5.867 16.542 1 33.73 ? O1 B41 600 A 1 HETATM 2 O O2 B41 . . . B 2 -7.054 -7.935 17.121 1 33.22 ? O2 B41 600 A 1 HETATM 3 N N B41 . . . B 2 -2.66 -1.901 15.506 1 24.67 ? N B41 600 A 1 HETATM 4 C CA B41 . . . B 2 -3.179 -3.279 15.626 1 26.94 ? CA B41 600 A 1 HETATM 5 C C B41 . . . B 2 -2.136 -4.264 15.071 1 25.46 ? C B41 600 A 1 HETATM 6 C CB B41 . . . B 2 -3.481 -3.602 17.106 1 26.3 ? CB B41 600 A 1 HETATM 7 C CG B41 . . . B 2 -4.412 -4.792 17.263 1 28.86 ? CG B41 600 A 1 HETATM 8 C CD1 B41 . . . B 2 -5.81 -4.614 17.106 1 31.45 ? CD1 B41 600 A 1 HETATM 9 C CD2 B41 . . . B 2 -3.902 -6.076 17.579 1 28.67 ? CD2 B41 600 A 1 HETATM 10 C CE1 B41 . . . B 2 -6.683 -5.712 17.267 1 31.12 ? CE1 B41 600 A 1 HETATM 11 C CE2 B41 . . . B 2 -4.788 -7.171 17.731 1 31.9 ? CE2 B41 600 A 1 HETATM 12 C CZ B41 . . . B 2 -6.18 -6.971 17.577 1 31.63 ? CZ B41 600 A 1 HETATM 13 C CM B41 . . . B 2 -3.765 -0.951 15.377 1 24.98 ? CM B41 600 A 1 HETATM 14 C CT B41 . . . B 2 -8.284 -7.222 16.823 1 31.8 ? CT B41 600 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #