data_3GM5 # _model_server_result.job_id HuMcp86IQDsq7Ui3HvK84g _model_server_result.datetime_utc '2025-03-04 16:02:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":379}' # _entry.id 3GM5 # _exptl.entry_id 3GM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GM5 _cell.length_a 54.022 _cell.length_b 54.022 _cell.length_c 104.798 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 104.798 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3GM5 _atom_sites.fract_transf_matrix[1][1] 0.018511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 379 379 CIT CIT . C 3 SO4 A 1 151 1 SO4 SO4 . D 3 SO4 A 1 152 2 SO4 SO4 . E 4 HOH A 1 153 1 HOH HOH . E 4 HOH A 2 154 2 HOH HOH . E 4 HOH A 3 155 3 HOH HOH . E 4 HOH A 4 156 4 HOH HOH . E 4 HOH A 5 157 5 HOH HOH . E 4 HOH A 6 158 6 HOH HOH . E 4 HOH A 7 159 7 HOH HOH . E 4 HOH A 8 160 8 HOH HOH . E 4 HOH A 9 161 9 HOH HOH . E 4 HOH A 10 162 10 HOH HOH . E 4 HOH A 11 163 11 HOH HOH . E 4 HOH A 12 164 12 HOH HOH . E 4 HOH A 13 165 13 HOH HOH . E 4 HOH A 14 166 14 HOH HOH . E 4 HOH A 15 167 15 HOH HOH . E 4 HOH A 16 168 16 HOH HOH . E 4 HOH A 17 169 17 HOH HOH . E 4 HOH A 18 170 18 HOH HOH . E 4 HOH A 19 171 19 HOH HOH . E 4 HOH A 20 172 20 HOH HOH . E 4 HOH A 21 173 21 HOH HOH . E 4 HOH A 22 174 22 HOH HOH . E 4 HOH A 23 175 23 HOH HOH . E 4 HOH A 24 176 24 HOH HOH . E 4 HOH A 25 177 25 HOH HOH . E 4 HOH A 26 178 26 HOH HOH . E 4 HOH A 27 179 27 HOH HOH . E 4 HOH A 28 180 28 HOH HOH . E 4 HOH A 29 181 29 HOH HOH . E 4 HOH A 30 182 30 HOH HOH . E 4 HOH A 31 183 31 HOH HOH . E 4 HOH A 32 184 32 HOH HOH . E 4 HOH A 33 185 33 HOH HOH . E 4 HOH A 34 186 34 HOH HOH . E 4 HOH A 35 187 35 HOH HOH . E 4 HOH A 36 188 36 HOH HOH . E 4 HOH A 37 189 37 HOH HOH . E 4 HOH A 38 190 38 HOH HOH . E 4 HOH A 39 191 39 HOH HOH . E 4 HOH A 40 192 40 HOH HOH . E 4 HOH A 41 193 41 HOH HOH . E 4 HOH A 42 194 42 HOH HOH . E 4 HOH A 43 195 43 HOH HOH . E 4 HOH A 44 196 44 HOH HOH . E 4 HOH A 45 197 45 HOH HOH . E 4 HOH A 46 198 46 HOH HOH . E 4 HOH A 47 199 47 HOH HOH . E 4 HOH A 48 200 48 HOH HOH . E 4 HOH A 49 201 49 HOH HOH . E 4 HOH A 50 202 50 HOH HOH . E 4 HOH A 51 203 51 HOH HOH . E 4 HOH A 52 204 52 HOH HOH . E 4 HOH A 53 205 53 HOH HOH . E 4 HOH A 54 206 54 HOH HOH . E 4 HOH A 55 207 55 HOH HOH . E 4 HOH A 56 208 56 HOH HOH . E 4 HOH A 57 209 57 HOH HOH . E 4 HOH A 58 210 58 HOH HOH . E 4 HOH A 59 211 59 HOH HOH . E 4 HOH A 60 212 60 HOH HOH . E 4 HOH A 61 213 61 HOH HOH . E 4 HOH A 62 214 62 HOH HOH . E 4 HOH A 63 215 63 HOH HOH . E 4 HOH A 64 216 64 HOH HOH . E 4 HOH A 65 217 65 HOH HOH . E 4 HOH A 66 218 66 HOH HOH . E 4 HOH A 67 219 67 HOH HOH . E 4 HOH A 68 220 68 HOH HOH . E 4 HOH A 69 221 69 HOH HOH . E 4 HOH A 70 222 70 HOH HOH . E 4 HOH A 71 223 71 HOH HOH . E 4 HOH A 72 224 72 HOH HOH . E 4 HOH A 73 225 73 HOH HOH . E 4 HOH A 74 226 74 HOH HOH . E 4 HOH A 75 227 75 HOH HOH . E 4 HOH A 76 228 76 HOH HOH . E 4 HOH A 77 229 77 HOH HOH . E 4 HOH A 78 230 78 HOH HOH . E 4 HOH A 79 231 79 HOH HOH . E 4 HOH A 80 232 80 HOH HOH . E 4 HOH A 81 233 81 HOH HOH . E 4 HOH A 82 234 82 HOH HOH . E 4 HOH A 83 235 83 HOH HOH . E 4 HOH A 84 236 84 HOH HOH . E 4 HOH A 85 237 85 HOH HOH . E 4 HOH A 86 238 86 HOH HOH . E 4 HOH A 87 239 87 HOH HOH . E 4 HOH A 88 240 88 HOH HOH . E 4 HOH A 89 241 89 HOH HOH . E 4 HOH A 90 242 90 HOH HOH . E 4 HOH A 91 243 91 HOH HOH . E 4 HOH A 92 244 92 HOH HOH . E 4 HOH A 93 245 93 HOH HOH . E 4 HOH A 94 246 94 HOH HOH . E 4 HOH A 95 247 95 HOH HOH . E 4 HOH A 96 248 96 HOH HOH . E 4 HOH A 97 249 97 HOH HOH . E 4 HOH A 98 250 98 HOH HOH . E 4 HOH A 99 251 99 HOH HOH . E 4 HOH A 100 252 100 HOH HOH . E 4 HOH A 101 253 101 HOH HOH . E 4 HOH A 102 254 102 HOH HOH . E 4 HOH A 103 255 103 HOH HOH . E 4 HOH A 104 256 104 HOH HOH . E 4 HOH A 105 257 105 HOH HOH . E 4 HOH A 106 258 106 HOH HOH . E 4 HOH A 107 259 107 HOH HOH . E 4 HOH A 108 260 108 HOH HOH . E 4 HOH A 109 261 109 HOH HOH . E 4 HOH A 110 262 110 HOH HOH . E 4 HOH A 111 263 111 HOH HOH . E 4 HOH A 112 264 112 HOH HOH . E 4 HOH A 113 265 113 HOH HOH . E 4 HOH A 114 266 114 HOH HOH . E 4 HOH A 115 267 115 HOH HOH . E 4 HOH A 116 268 116 HOH HOH . E 4 HOH A 117 269 117 HOH HOH . E 4 HOH A 118 270 118 HOH HOH . E 4 HOH A 119 271 119 HOH HOH . E 4 HOH A 120 272 120 HOH HOH . E 4 HOH A 121 273 121 HOH HOH . E 4 HOH A 122 274 122 HOH HOH . E 4 HOH A 123 275 123 HOH HOH . E 4 HOH A 124 276 124 HOH HOH . E 4 HOH A 125 277 125 HOH HOH . E 4 HOH A 126 278 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 12.19 27.061 44.393 1 14.23 ? C1 CIT 379 A 1 HETATM 2 O O1 CIT . . . B 2 11.773 25.919 44.003 1 13.17 ? O1 CIT 379 A 1 HETATM 3 O O2 CIT . . . B 2 13.148 27.162 45.203 1 12.36 ? O2 CIT 379 A 1 HETATM 4 C C2 CIT . . . B 2 11.532 28.338 43.886 1 12.11 ? C2 CIT 379 A 1 HETATM 5 C C3 CIT . . . B 2 12.411 29.133 42.907 1 18.77 ? C3 CIT 379 A 1 HETATM 6 O O7 CIT . . . B 2 12.785 28.293 41.76 1 14.02 ? O7 CIT 379 A 1 HETATM 7 C C4 CIT . . . B 2 11.557 30.356 42.521 1 24.41 ? C4 CIT 379 A 1 HETATM 8 C C5 CIT . . . B 2 11.796 31.151 41.262 1 17.79 ? C5 CIT 379 A 1 HETATM 9 O O3 CIT . . . B 2 12.175 32.334 41.318 1 36.44 ? O3 CIT 379 A 1 HETATM 10 O O4 CIT . . . B 2 11.606 30.66 40.163 1 29.78 ? O4 CIT 379 A 1 HETATM 11 C C6 CIT . . . B 2 13.694 29.633 43.626 1 15.64 ? C6 CIT 379 A 1 HETATM 12 O O5 CIT . . . B 2 14.813 29.304 43.215 1 16.41 ? O5 CIT 379 A 1 HETATM 13 O O6 CIT . . . B 2 13.656 30.367 44.632 1 12.8 ? O6 CIT 379 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #