data_3GMI # _model_server_result.job_id KVJlaoNNpyl4Vr81tfZ18A _model_server_result.datetime_utc '2024-10-18 18:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3GMI # _exptl.entry_id 3GMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GMI _cell.length_a 70.935 _cell.length_b 73.988 _cell.length_c 85.024 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 161 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 179 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 177 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.581 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GMI _atom_sites.fract_transf_matrix[1][1] 0.014097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 401 1 MLI MLI . C 3 HOH A 1 356 1 HOH HOH . C 3 HOH A 2 357 2 HOH HOH . C 3 HOH A 3 358 4 HOH HOH . C 3 HOH A 4 359 5 HOH HOH . C 3 HOH A 5 360 6 HOH HOH . C 3 HOH A 6 361 7 HOH HOH . C 3 HOH A 7 362 8 HOH HOH . C 3 HOH A 8 363 10 HOH HOH . C 3 HOH A 9 364 11 HOH HOH . C 3 HOH A 10 365 12 HOH HOH . C 3 HOH A 11 366 13 HOH HOH . C 3 HOH A 12 367 14 HOH HOH . C 3 HOH A 13 368 15 HOH HOH . C 3 HOH A 14 369 16 HOH HOH . C 3 HOH A 15 370 17 HOH HOH . C 3 HOH A 16 371 18 HOH HOH . C 3 HOH A 17 372 19 HOH HOH . C 3 HOH A 18 373 20 HOH HOH . C 3 HOH A 19 374 21 HOH HOH . C 3 HOH A 20 375 22 HOH HOH . C 3 HOH A 21 376 23 HOH HOH . C 3 HOH A 22 377 24 HOH HOH . C 3 HOH A 23 378 25 HOH HOH . C 3 HOH A 24 379 26 HOH HOH . C 3 HOH A 25 380 27 HOH HOH . C 3 HOH A 26 381 28 HOH HOH . C 3 HOH A 27 382 29 HOH HOH . C 3 HOH A 28 383 30 HOH HOH . C 3 HOH A 29 384 31 HOH HOH . C 3 HOH A 30 385 32 HOH HOH . C 3 HOH A 31 386 33 HOH HOH . C 3 HOH A 32 387 34 HOH HOH . C 3 HOH A 33 388 35 HOH HOH . C 3 HOH A 34 389 36 HOH HOH . C 3 HOH A 35 390 37 HOH HOH . C 3 HOH A 36 391 38 HOH HOH . C 3 HOH A 37 392 39 HOH HOH . C 3 HOH A 38 393 40 HOH HOH . C 3 HOH A 39 394 41 HOH HOH . C 3 HOH A 40 395 42 HOH HOH . C 3 HOH A 41 396 43 HOH HOH . C 3 HOH A 42 397 44 HOH HOH . C 3 HOH A 43 398 45 HOH HOH . C 3 HOH A 44 399 46 HOH HOH . C 3 HOH A 45 400 47 HOH HOH . C 3 HOH A 46 402 48 HOH HOH . C 3 HOH A 47 403 49 HOH HOH . C 3 HOH A 48 404 50 HOH HOH . C 3 HOH A 49 405 51 HOH HOH . C 3 HOH A 50 406 52 HOH HOH . C 3 HOH A 51 407 53 HOH HOH . C 3 HOH A 52 408 54 HOH HOH . C 3 HOH A 53 409 55 HOH HOH . C 3 HOH A 54 410 56 HOH HOH . C 3 HOH A 55 411 57 HOH HOH . C 3 HOH A 56 412 58 HOH HOH . C 3 HOH A 57 413 59 HOH HOH . C 3 HOH A 58 414 60 HOH HOH . C 3 HOH A 59 415 61 HOH HOH . C 3 HOH A 60 416 62 HOH HOH . C 3 HOH A 61 417 63 HOH HOH . C 3 HOH A 62 418 64 HOH HOH . C 3 HOH A 63 419 65 HOH HOH . C 3 HOH A 64 420 66 HOH HOH . C 3 HOH A 65 421 67 HOH HOH . C 3 HOH A 66 422 68 HOH HOH . C 3 HOH A 67 423 69 HOH HOH . C 3 HOH A 68 424 70 HOH HOH . C 3 HOH A 69 425 71 HOH HOH . C 3 HOH A 70 426 72 HOH HOH . C 3 HOH A 71 427 73 HOH HOH . C 3 HOH A 72 428 74 HOH HOH . C 3 HOH A 73 429 75 HOH HOH . C 3 HOH A 74 430 76 HOH HOH . C 3 HOH A 75 431 77 HOH HOH . C 3 HOH A 76 432 78 HOH HOH . C 3 HOH A 77 433 79 HOH HOH . C 3 HOH A 78 434 80 HOH HOH . C 3 HOH A 79 435 81 HOH HOH . C 3 HOH A 80 436 82 HOH HOH . C 3 HOH A 81 437 83 HOH HOH . C 3 HOH A 82 438 84 HOH HOH . C 3 HOH A 83 439 85 HOH HOH . C 3 HOH A 84 440 86 HOH HOH . C 3 HOH A 85 441 87 HOH HOH . C 3 HOH A 86 442 88 HOH HOH . C 3 HOH A 87 443 89 HOH HOH . C 3 HOH A 88 444 90 HOH HOH . C 3 HOH A 89 445 91 HOH HOH . C 3 HOH A 90 446 92 HOH HOH . C 3 HOH A 91 447 93 HOH HOH . C 3 HOH A 92 448 94 HOH HOH . C 3 HOH A 93 449 95 HOH HOH . C 3 HOH A 94 450 96 HOH HOH . C 3 HOH A 95 451 97 HOH HOH . C 3 HOH A 96 452 98 HOH HOH . C 3 HOH A 97 453 99 HOH HOH . C 3 HOH A 98 454 100 HOH HOH . C 3 HOH A 99 455 101 HOH HOH . C 3 HOH A 100 456 102 HOH HOH . C 3 HOH A 101 457 103 HOH HOH . C 3 HOH A 102 458 104 HOH HOH . C 3 HOH A 103 459 105 HOH HOH . C 3 HOH A 104 460 106 HOH HOH . C 3 HOH A 105 461 107 HOH HOH . C 3 HOH A 106 462 108 HOH HOH . C 3 HOH A 107 463 109 HOH HOH . C 3 HOH A 108 464 110 HOH HOH . C 3 HOH A 109 465 111 HOH HOH . C 3 HOH A 110 466 112 HOH HOH . C 3 HOH A 111 467 113 HOH HOH . C 3 HOH A 112 468 114 HOH HOH . C 3 HOH A 113 469 115 HOH HOH . C 3 HOH A 114 470 116 HOH HOH . C 3 HOH A 115 471 117 HOH HOH . C 3 HOH A 116 472 118 HOH HOH . C 3 HOH A 117 473 119 HOH HOH . C 3 HOH A 118 474 120 HOH HOH . C 3 HOH A 119 475 121 HOH HOH . C 3 HOH A 120 476 122 HOH HOH . C 3 HOH A 121 477 124 HOH HOH . C 3 HOH A 122 478 125 HOH HOH . C 3 HOH A 123 479 126 HOH HOH . C 3 HOH A 124 480 127 HOH HOH . C 3 HOH A 125 481 128 HOH HOH . C 3 HOH A 126 482 129 HOH HOH . C 3 HOH A 127 483 130 HOH HOH . C 3 HOH A 128 484 131 HOH HOH . C 3 HOH A 129 485 133 HOH HOH . C 3 HOH A 130 486 134 HOH HOH . C 3 HOH A 131 487 135 HOH HOH . C 3 HOH A 132 488 136 HOH HOH . C 3 HOH A 133 489 137 HOH HOH . C 3 HOH A 134 490 138 HOH HOH . C 3 HOH A 135 491 139 HOH HOH . C 3 HOH A 136 492 140 HOH HOH . C 3 HOH A 137 493 141 HOH HOH . C 3 HOH A 138 494 142 HOH HOH . C 3 HOH A 139 495 143 HOH HOH . C 3 HOH A 140 496 144 HOH HOH . C 3 HOH A 141 497 145 HOH HOH . C 3 HOH A 142 498 146 HOH HOH . C 3 HOH A 143 499 147 HOH HOH . C 3 HOH A 144 500 148 HOH HOH . C 3 HOH A 145 501 149 HOH HOH . C 3 HOH A 146 502 150 HOH HOH . C 3 HOH A 147 503 151 HOH HOH . C 3 HOH A 148 504 152 HOH HOH . C 3 HOH A 149 505 153 HOH HOH . C 3 HOH A 150 506 154 HOH HOH . C 3 HOH A 151 507 155 HOH HOH . C 3 HOH A 152 508 156 HOH HOH . C 3 HOH A 153 509 157 HOH HOH . C 3 HOH A 154 510 158 HOH HOH . C 3 HOH A 155 511 159 HOH HOH . C 3 HOH A 156 512 160 HOH HOH . C 3 HOH A 157 513 161 HOH HOH . C 3 HOH A 158 514 163 HOH HOH . C 3 HOH A 159 515 164 HOH HOH . C 3 HOH A 160 516 165 HOH HOH . C 3 HOH A 161 517 166 HOH HOH . C 3 HOH A 162 518 167 HOH HOH . C 3 HOH A 163 519 168 HOH HOH . C 3 HOH A 164 520 169 HOH HOH . C 3 HOH A 165 521 171 HOH HOH . C 3 HOH A 166 522 172 HOH HOH . C 3 HOH A 167 523 174 HOH HOH . C 3 HOH A 168 524 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 30.398 10.07 4.094 1 28.81 ? C1 MLI 401 A 1 HETATM 2 C C2 MLI . . . B 2 30.843 10.516 5.504 1 29.85 ? C2 MLI 401 A 1 HETATM 3 C C3 MLI . . . B 2 31.346 9.082 3.402 1 28.7 ? C3 MLI 401 A 1 HETATM 4 O O6 MLI . . . B 2 30.837 11.733 5.822 1 28.19 ? O6 MLI 401 A 1 HETATM 5 O O7 MLI . . . B 2 31.206 9.656 6.313 1 28 ? O7 MLI 401 A 1 HETATM 6 O O8 MLI . . . B 2 30.912 7.991 3.008 1 27.48 ? O8 MLI 401 A 1 HETATM 7 O O9 MLI . . . B 2 32.542 9.356 3.246 1 27.99 ? O9 MLI 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #