data_3GMV # _model_server_result.job_id G3PVp9DdpyW3FgePeqpx5g _model_server_result.datetime_utc '2024-11-29 10:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3GMV # _exptl.entry_id 3GMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.58 _cell.angle_gamma 90 _cell.entry_id 3GMV _cell.length_a 98.735 _cell.length_b 44.071 _cell.length_c 45.291 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 X CYS 31 1_555 A SG CYS 42 X CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 105 X CYS 106 1_555 A SG CYS 127 X CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 290 n n C C2 TAM sing 291 n n C C3 TAM sing 292 n n C N TAM sing 293 n n C1 C4 TAM sing 294 n n C1 H11 TAM sing 295 n n C1 H12 TAM sing 296 n n C2 C5 TAM sing 297 n n C2 H21 TAM sing 298 n n C2 H22 TAM sing 299 n n C3 C6 TAM sing 300 n n C3 H31 TAM sing 301 n n C3 H32 TAM sing 302 n n C4 O4 TAM sing 303 n n C4 H41 TAM sing 304 n n C4 H42 TAM sing 305 n n C5 O5 TAM sing 306 n n C5 H51 TAM sing 307 n n C5 H52 TAM sing 308 n n C6 O6 TAM sing 309 n n C6 H61 TAM sing 310 n n C6 H62 TAM sing 311 n n N HN1 TAM sing 312 n n N HN2 TAM sing 313 n n O4 HO4 TAM sing 314 n n O5 HO5 TAM sing 315 n n O6 HO6 TAM sing 316 n n # _atom_sites.entry_id 3GMV _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TAM X 1 1 1 TAM TAM . C 3 HOH X 1 158 158 HOH HOH . C 3 HOH X 2 159 159 HOH HOH . C 3 HOH X 3 160 160 HOH HOH . C 3 HOH X 4 161 161 HOH HOH . C 3 HOH X 5 162 162 HOH HOH . C 3 HOH X 6 163 163 HOH HOH . C 3 HOH X 7 164 164 HOH HOH . C 3 HOH X 8 165 165 HOH HOH . C 3 HOH X 9 166 166 HOH HOH . C 3 HOH X 10 167 167 HOH HOH . C 3 HOH X 11 168 168 HOH HOH . C 3 HOH X 12 169 1 HOH HOH . C 3 HOH X 13 170 170 HOH HOH . C 3 HOH X 14 171 171 HOH HOH . C 3 HOH X 15 172 172 HOH HOH . C 3 HOH X 16 173 173 HOH HOH . C 3 HOH X 17 174 174 HOH HOH . C 3 HOH X 18 175 175 HOH HOH . C 3 HOH X 19 176 176 HOH HOH . C 3 HOH X 20 177 177 HOH HOH . C 3 HOH X 21 178 178 HOH HOH . C 3 HOH X 22 179 179 HOH HOH . C 3 HOH X 23 180 180 HOH HOH . C 3 HOH X 24 181 181 HOH HOH . C 3 HOH X 25 182 182 HOH HOH . C 3 HOH X 26 183 183 HOH HOH . C 3 HOH X 27 184 184 HOH HOH . C 3 HOH X 28 185 185 HOH HOH . C 3 HOH X 29 186 186 HOH HOH . C 3 HOH X 30 187 187 HOH HOH . C 3 HOH X 31 188 188 HOH HOH . C 3 HOH X 32 189 189 HOH HOH . C 3 HOH X 33 190 190 HOH HOH . C 3 HOH X 34 191 191 HOH HOH . C 3 HOH X 35 192 192 HOH HOH . C 3 HOH X 36 193 193 HOH HOH . C 3 HOH X 37 194 194 HOH HOH . C 3 HOH X 38 195 195 HOH HOH . C 3 HOH X 39 196 196 HOH HOH . C 3 HOH X 40 197 197 HOH HOH . C 3 HOH X 41 198 198 HOH HOH . C 3 HOH X 42 199 199 HOH HOH . C 3 HOH X 43 200 200 HOH HOH . C 3 HOH X 44 201 201 HOH HOH . C 3 HOH X 45 202 202 HOH HOH . C 3 HOH X 46 203 203 HOH HOH . C 3 HOH X 47 204 2 HOH HOH . C 3 HOH X 48 205 3 HOH HOH . C 3 HOH X 49 206 4 HOH HOH . C 3 HOH X 50 207 5 HOH HOH . C 3 HOH X 51 208 6 HOH HOH . C 3 HOH X 52 209 7 HOH HOH . C 3 HOH X 53 210 8 HOH HOH . C 3 HOH X 54 211 9 HOH HOH . C 3 HOH X 55 212 10 HOH HOH . C 3 HOH X 56 213 11 HOH HOH . C 3 HOH X 57 214 12 HOH HOH . C 3 HOH X 58 215 13 HOH HOH . C 3 HOH X 59 216 14 HOH HOH . C 3 HOH X 60 217 15 HOH HOH . C 3 HOH X 61 218 16 HOH HOH . C 3 HOH X 62 219 17 HOH HOH . C 3 HOH X 63 220 18 HOH HOH . C 3 HOH X 64 221 19 HOH HOH . C 3 HOH X 65 222 20 HOH HOH . C 3 HOH X 66 223 21 HOH HOH . C 3 HOH X 67 224 22 HOH HOH . C 3 HOH X 68 225 23 HOH HOH . C 3 HOH X 69 226 24 HOH HOH . C 3 HOH X 70 227 25 HOH HOH . C 3 HOH X 71 228 26 HOH HOH . C 3 HOH X 72 229 27 HOH HOH . C 3 HOH X 73 230 28 HOH HOH . C 3 HOH X 74 231 29 HOH HOH . C 3 HOH X 75 232 30 HOH HOH . C 3 HOH X 76 233 31 HOH HOH . C 3 HOH X 77 234 32 HOH HOH . C 3 HOH X 78 235 33 HOH HOH . C 3 HOH X 79 236 34 HOH HOH . C 3 HOH X 80 237 35 HOH HOH . C 3 HOH X 81 238 36 HOH HOH . C 3 HOH X 82 239 37 HOH HOH . C 3 HOH X 83 240 38 HOH HOH . C 3 HOH X 84 241 39 HOH HOH . C 3 HOH X 85 242 40 HOH HOH . C 3 HOH X 86 243 41 HOH HOH . C 3 HOH X 87 244 42 HOH HOH . C 3 HOH X 88 245 43 HOH HOH . C 3 HOH X 89 246 44 HOH HOH . C 3 HOH X 90 247 45 HOH HOH . C 3 HOH X 91 248 46 HOH HOH . C 3 HOH X 92 249 47 HOH HOH . C 3 HOH X 93 250 48 HOH HOH . C 3 HOH X 94 251 49 HOH HOH . C 3 HOH X 95 252 50 HOH HOH . C 3 HOH X 96 253 51 HOH HOH . C 3 HOH X 97 254 52 HOH HOH . C 3 HOH X 98 255 53 HOH HOH . C 3 HOH X 99 256 54 HOH HOH . C 3 HOH X 100 257 55 HOH HOH . C 3 HOH X 101 258 56 HOH HOH . C 3 HOH X 102 259 57 HOH HOH . C 3 HOH X 103 260 58 HOH HOH . C 3 HOH X 104 261 59 HOH HOH . C 3 HOH X 105 262 60 HOH HOH . C 3 HOH X 106 263 61 HOH HOH . C 3 HOH X 107 264 62 HOH HOH . C 3 HOH X 108 265 63 HOH HOH . C 3 HOH X 109 266 64 HOH HOH . C 3 HOH X 110 267 65 HOH HOH . C 3 HOH X 111 268 66 HOH HOH . C 3 HOH X 112 269 67 HOH HOH . C 3 HOH X 113 270 68 HOH HOH . C 3 HOH X 114 271 69 HOH HOH . C 3 HOH X 115 272 70 HOH HOH . C 3 HOH X 116 273 71 HOH HOH . C 3 HOH X 117 274 72 HOH HOH . C 3 HOH X 118 275 73 HOH HOH . C 3 HOH X 119 276 74 HOH HOH . C 3 HOH X 120 277 75 HOH HOH . C 3 HOH X 121 278 76 HOH HOH . C 3 HOH X 122 279 77 HOH HOH . C 3 HOH X 123 280 78 HOH HOH . C 3 HOH X 124 281 79 HOH HOH . C 3 HOH X 125 282 80 HOH HOH . C 3 HOH X 126 283 81 HOH HOH . C 3 HOH X 127 284 82 HOH HOH . C 3 HOH X 128 285 84 HOH HOH . C 3 HOH X 129 286 85 HOH HOH . C 3 HOH X 130 287 86 HOH HOH . C 3 HOH X 131 288 87 HOH HOH . C 3 HOH X 132 289 88 HOH HOH . C 3 HOH X 133 290 89 HOH HOH . C 3 HOH X 134 291 90 HOH HOH . C 3 HOH X 135 292 91 HOH HOH . C 3 HOH X 136 293 92 HOH HOH . C 3 HOH X 137 294 93 HOH HOH . C 3 HOH X 138 295 94 HOH HOH . C 3 HOH X 139 296 95 HOH HOH . C 3 HOH X 140 297 96 HOH HOH . C 3 HOH X 141 298 97 HOH HOH . C 3 HOH X 142 299 98 HOH HOH . C 3 HOH X 143 300 99 HOH HOH . C 3 HOH X 144 301 100 HOH HOH . C 3 HOH X 145 302 101 HOH HOH . C 3 HOH X 146 303 102 HOH HOH . C 3 HOH X 147 304 103 HOH HOH . C 3 HOH X 148 305 104 HOH HOH . C 3 HOH X 149 306 105 HOH HOH . C 3 HOH X 150 307 106 HOH HOH . C 3 HOH X 151 308 107 HOH HOH . C 3 HOH X 152 309 108 HOH HOH . C 3 HOH X 153 310 109 HOH HOH . C 3 HOH X 154 311 110 HOH HOH . C 3 HOH X 155 312 111 HOH HOH . C 3 HOH X 156 313 112 HOH HOH . C 3 HOH X 157 314 113 HOH HOH . C 3 HOH X 158 315 114 HOH HOH . C 3 HOH X 159 316 115 HOH HOH . C 3 HOH X 160 317 116 HOH HOH . C 3 HOH X 161 318 117 HOH HOH . C 3 HOH X 162 319 118 HOH HOH . C 3 HOH X 163 320 119 HOH HOH . C 3 HOH X 164 321 120 HOH HOH . C 3 HOH X 165 322 121 HOH HOH . C 3 HOH X 166 323 122 HOH HOH . C 3 HOH X 167 324 123 HOH HOH . C 3 HOH X 168 325 124 HOH HOH . C 3 HOH X 169 326 125 HOH HOH . C 3 HOH X 170 327 126 HOH HOH . C 3 HOH X 171 328 127 HOH HOH . C 3 HOH X 172 329 128 HOH HOH . C 3 HOH X 173 330 129 HOH HOH . C 3 HOH X 174 331 130 HOH HOH . C 3 HOH X 175 332 131 HOH HOH . C 3 HOH X 176 333 132 HOH HOH . C 3 HOH X 177 334 133 HOH HOH . C 3 HOH X 178 335 134 HOH HOH . C 3 HOH X 179 336 135 HOH HOH . C 3 HOH X 180 337 136 HOH HOH . C 3 HOH X 181 338 137 HOH HOH . C 3 HOH X 182 339 138 HOH HOH . C 3 HOH X 183 340 139 HOH HOH . C 3 HOH X 184 341 140 HOH HOH . C 3 HOH X 185 342 141 HOH HOH . C 3 HOH X 186 343 142 HOH HOH . C 3 HOH X 187 344 143 HOH HOH . C 3 HOH X 188 345 144 HOH HOH . C 3 HOH X 189 346 145 HOH HOH . C 3 HOH X 190 347 146 HOH HOH . C 3 HOH X 191 348 147 HOH HOH . C 3 HOH X 192 349 148 HOH HOH . C 3 HOH X 193 350 149 HOH HOH . C 3 HOH X 194 351 150 HOH HOH . C 3 HOH X 195 352 151 HOH HOH . C 3 HOH X 196 353 152 HOH HOH . C 3 HOH X 197 354 153 HOH HOH . C 3 HOH X 198 355 154 HOH HOH . C 3 HOH X 199 356 155 HOH HOH . C 3 HOH X 200 357 156 HOH HOH . C 3 HOH X 201 358 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . B 2 11.974 5.704 28.477 1 40.14 ? C TAM 1 X 1 HETATM 2 C C1 TAM . . . B 2 12.631 6.664 27.508 1 40.41 ? C1 TAM 1 X 1 HETATM 3 C C2 TAM . . . B 2 10.469 5.629 28.23 1 40.59 ? C2 TAM 1 X 1 HETATM 4 C C3 TAM . . . B 2 12.249 6.154 29.897 1 40.1 ? C3 TAM 1 X 1 HETATM 5 C C4 TAM . . . B 2 12.58 6.114 26.092 1 39.73 ? C4 TAM 1 X 1 HETATM 6 C C5 TAM . . . B 2 10.128 5.737 26.746 1 41.39 ? C5 TAM 1 X 1 HETATM 7 C C6 TAM . . . B 2 11.881 5.069 30.904 1 39.48 ? C6 TAM 1 X 1 HETATM 8 N N TAM . . . B 2 12.56 4.384 28.29 1 40.27 ? N TAM 1 X 1 HETATM 9 O O4 TAM . . . B 2 13.263 7.037 25.224 1 38.68 ? O4 TAM 1 X 1 HETATM 10 O O5 TAM . . . B 2 9.317 6.905 26.503 1 43.22 ? O5 TAM 1 X 1 HETATM 11 O O6 TAM . . . B 2 11.231 3.977 30.244 1 37.15 ? O6 TAM 1 X 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #