data_3GN7 # _model_server_result.job_id SY36WBxi910nCJzpqI2oWg _model_server_result.datetime_utc '2024-11-08 06:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 3GN7 # _exptl.entry_id 3GN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.292 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2S)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GN7 _cell.length_a 94.349 _cell.length_b 94.349 _cell.length_c 68.204 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H16 N4 O' _chem_comp.formula_weight 244.292 _chem_comp.id 3GN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2S)-2-methylpyrrolidin-2-yl]-1H-benzimidazole-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 3GN doub 1 n y C4 C3 3GN sing 2 n y C4 N9 3GN sing 3 n y C5 C6 3GN sing 4 n y C5 C10 3GN sing 5 n n C6 C1 3GN doub 6 n y C8 C13 3GN sing 7 n n C8 N7 3GN doub 8 n y C8 N9 3GN sing 9 n y C10 N11 3GN sing 10 n n C10 O12 3GN doub 11 n n C13 C17 3GN sing 12 n n C13 N14 3GN sing 13 n n C13 C18 3GN sing 14 n n C15 N14 3GN sing 15 n n C15 C16 3GN sing 16 n n C17 C16 3GN sing 17 n n C1 C2 3GN sing 18 n y C2 C3 3GN doub 19 n y C3 N7 3GN sing 20 n y C6 H6 3GN sing 21 n n C15 H15 3GN sing 22 n n C15 H15A 3GN sing 23 n n C17 H17 3GN sing 24 n n C17 H17A 3GN sing 25 n n C1 H1 3GN sing 26 n n C2 H2 3GN sing 27 n n N9 HN9 3GN sing 28 n n N11 HN11 3GN sing 29 n n N11 HN1A 3GN sing 30 n n N14 HN14 3GN sing 31 n n C16 H16 3GN sing 32 n n C16 H16A 3GN sing 33 n n C18 H18 3GN sing 34 n n C18 H18A 3GN sing 35 n n C18 H18B 3GN sing 36 n n # _atom_sites.entry_id 3GN7 _atom_sites.fract_transf_matrix[1][1] 0.010599 _atom_sites.fract_transf_matrix[1][2] 0.006119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3GN A 1 900 900 3GN 3GN . C 3 HOH A 1 351 1 HOH HOH . C 3 HOH A 2 352 2 HOH HOH . C 3 HOH A 3 353 3 HOH HOH . C 3 HOH A 4 354 4 HOH HOH . C 3 HOH A 5 355 5 HOH HOH . C 3 HOH A 6 356 6 HOH HOH . C 3 HOH A 7 357 7 HOH HOH . C 3 HOH A 8 358 8 HOH HOH . C 3 HOH A 9 359 9 HOH HOH . C 3 HOH A 10 360 10 HOH HOH . C 3 HOH A 11 361 11 HOH HOH . C 3 HOH A 12 362 12 HOH HOH . C 3 HOH A 13 363 13 HOH HOH . C 3 HOH A 14 364 14 HOH HOH . C 3 HOH A 15 365 15 HOH HOH . C 3 HOH A 16 366 16 HOH HOH . C 3 HOH A 17 367 17 HOH HOH . C 3 HOH A 18 368 18 HOH HOH . C 3 HOH A 19 369 19 HOH HOH . C 3 HOH A 20 370 20 HOH HOH . C 3 HOH A 21 371 21 HOH HOH . C 3 HOH A 22 372 22 HOH HOH . C 3 HOH A 23 373 23 HOH HOH . C 3 HOH A 24 374 24 HOH HOH . C 3 HOH A 25 375 25 HOH HOH . C 3 HOH A 26 376 26 HOH HOH . C 3 HOH A 27 377 27 HOH HOH . C 3 HOH A 28 378 28 HOH HOH . C 3 HOH A 29 379 29 HOH HOH . C 3 HOH A 30 380 30 HOH HOH . C 3 HOH A 31 381 31 HOH HOH . C 3 HOH A 32 382 32 HOH HOH . C 3 HOH A 33 383 33 HOH HOH . C 3 HOH A 34 384 34 HOH HOH . C 3 HOH A 35 385 35 HOH HOH . C 3 HOH A 36 386 36 HOH HOH . C 3 HOH A 37 387 37 HOH HOH . C 3 HOH A 38 388 38 HOH HOH . C 3 HOH A 39 389 39 HOH HOH . C 3 HOH A 40 390 40 HOH HOH . C 3 HOH A 41 391 41 HOH HOH . C 3 HOH A 42 392 42 HOH HOH . C 3 HOH A 43 393 43 HOH HOH . C 3 HOH A 44 394 44 HOH HOH . C 3 HOH A 45 395 45 HOH HOH . C 3 HOH A 46 396 46 HOH HOH . C 3 HOH A 47 397 47 HOH HOH . C 3 HOH A 48 398 48 HOH HOH . C 3 HOH A 49 399 49 HOH HOH . C 3 HOH A 50 400 50 HOH HOH . C 3 HOH A 51 401 51 HOH HOH . C 3 HOH A 52 402 52 HOH HOH . C 3 HOH A 53 403 53 HOH HOH . C 3 HOH A 54 404 54 HOH HOH . C 3 HOH A 55 405 55 HOH HOH . C 3 HOH A 56 406 56 HOH HOH . C 3 HOH A 57 407 57 HOH HOH . C 3 HOH A 58 408 58 HOH HOH . C 3 HOH A 59 409 59 HOH HOH . C 3 HOH A 60 410 60 HOH HOH . C 3 HOH A 61 411 61 HOH HOH . C 3 HOH A 62 412 62 HOH HOH . C 3 HOH A 63 413 63 HOH HOH . C 3 HOH A 64 414 64 HOH HOH . C 3 HOH A 65 415 65 HOH HOH . C 3 HOH A 66 416 66 HOH HOH . C 3 HOH A 67 417 67 HOH HOH . C 3 HOH A 68 418 68 HOH HOH . C 3 HOH A 69 419 69 HOH HOH . C 3 HOH A 70 420 70 HOH HOH . C 3 HOH A 71 421 71 HOH HOH . C 3 HOH A 72 422 72 HOH HOH . C 3 HOH A 73 423 73 HOH HOH . C 3 HOH A 74 424 74 HOH HOH . C 3 HOH A 75 425 75 HOH HOH . C 3 HOH A 76 426 76 HOH HOH . C 3 HOH A 77 427 77 HOH HOH . C 3 HOH A 78 428 78 HOH HOH . C 3 HOH A 79 429 79 HOH HOH . C 3 HOH A 80 430 80 HOH HOH . C 3 HOH A 81 431 81 HOH HOH . C 3 HOH A 82 432 82 HOH HOH . C 3 HOH A 83 433 83 HOH HOH . C 3 HOH A 84 434 84 HOH HOH . C 3 HOH A 85 435 85 HOH HOH . C 3 HOH A 86 436 86 HOH HOH . C 3 HOH A 87 437 87 HOH HOH . C 3 HOH A 88 438 88 HOH HOH . C 3 HOH A 89 439 89 HOH HOH . C 3 HOH A 90 440 90 HOH HOH . C 3 HOH A 91 441 91 HOH HOH . C 3 HOH A 92 442 92 HOH HOH . C 3 HOH A 93 443 93 HOH HOH . C 3 HOH A 94 444 94 HOH HOH . C 3 HOH A 95 445 95 HOH HOH . C 3 HOH A 96 446 96 HOH HOH . C 3 HOH A 97 447 97 HOH HOH . C 3 HOH A 98 448 98 HOH HOH . C 3 HOH A 99 449 99 HOH HOH . C 3 HOH A 100 450 100 HOH HOH . C 3 HOH A 101 451 101 HOH HOH . C 3 HOH A 102 452 102 HOH HOH . C 3 HOH A 103 453 103 HOH HOH . C 3 HOH A 104 454 104 HOH HOH . C 3 HOH A 105 455 105 HOH HOH . C 3 HOH A 106 456 106 HOH HOH . C 3 HOH A 107 457 107 HOH HOH . C 3 HOH A 108 458 108 HOH HOH . C 3 HOH A 109 459 109 HOH HOH . C 3 HOH A 110 460 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3GN . . . B 2 26.509 65.404 9.39 1 28.06 ? C4 3GN 900 A 1 HETATM 2 C C5 3GN . . . B 2 26.934 66.189 10.444 1 53.15 ? C5 3GN 900 A 1 HETATM 3 C C6 3GN . . . B 2 28.234 66.046 10.866 1 43.75 ? C6 3GN 900 A 1 HETATM 4 C C8 3GN . . . B 2 25.43 64.435 7.821 1 34.59 ? C8 3GN 900 A 1 HETATM 5 C C10 3GN . . . B 2 26.062 67.156 11.115 1 38.19 ? C10 3GN 900 A 1 HETATM 6 C C13 3GN . . . B 2 24.413 63.997 6.853 1 35.25 ? C13 3GN 900 A 1 HETATM 7 C C15 3GN . . . B 2 23.114 65.871 6.027 1 58.78 ? C15 3GN 900 A 1 HETATM 8 C C17 3GN . . . B 2 24.854 64.26 5.436 1 32.68 ? C17 3GN 900 A 1 HETATM 9 C C1 3GN . . . B 2 29.09 65.144 10.274 1 17.52 ? C1 3GN 900 A 1 HETATM 10 C C2 3GN . . . B 2 28.702 64.357 9.215 1 35.19 ? C2 3GN 900 A 1 HETATM 11 C C3 3GN . . . B 2 27.401 64.534 8.805 1 28.91 ? C3 3GN 900 A 1 HETATM 12 N N7 3GN . . . B 2 26.692 63.929 7.807 1 29.64 ? N7 3GN 900 A 1 HETATM 13 N N9 3GN . . . B 2 25.286 65.335 8.773 1 32.76 ? N9 3GN 900 A 1 HETATM 14 N N11 3GN . . . B 2 24.727 66.982 10.857 1 29.82 ? N11 3GN 900 A 1 HETATM 15 O O12 3GN . . . B 2 26.55 68.035 11.808 1 27.01 ? O12 3GN 900 A 1 HETATM 16 N N14 3GN . . . B 2 23.161 64.776 7.021 1 42.67 ? N14 3GN 900 A 1 HETATM 17 C C16 3GN . . . B 2 24.062 65.443 4.932 1 44.28 ? C16 3GN 900 A 1 HETATM 18 C C18 3GN . . . B 2 24.096 62.54 7.02 1 14.88 ? C18 3GN 900 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #