data_3GN8
#
_model_server_result.job_id            4Kfi8YXETmcpex1_kP0KXA 
_model_server_result.datetime_utc      '2024-10-13 06:21:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gn8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":247}' 
#
_entry.id    3GN8 
#
_exptl.entry_id    3GN8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.461 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DEXAMETHASONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GN8 
_cell.length_a            104.218 
_cell.length_b            104.218 
_cell.length_c            144.166 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GN8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G 1 1 
B,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H29 F O5' 
_chem_comp.formula_weight    392.461 
_chem_comp.id                DEX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DEXAMETHASONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     9A-FLUORO-16BETA-METHYLPREDNISOLONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEX doub 83 n n 
C1 C10 DEX sing 84 n n 
C1 H1 DEX sing 85 n n 
C2 C3 DEX sing 86 n n 
C2 H2 DEX sing 87 n n 
C3 C4 DEX sing 88 n n 
C3 O1 DEX doub 89 n n 
C4 C5 DEX doub 90 n n 
C4 H4 DEX sing 91 n n 
C5 C6 DEX sing 92 n n 
C5 C10 DEX sing 93 n n 
C6 C7 DEX sing 94 n n 
C6 H61 DEX sing 95 n n 
C6 H62 DEX sing 96 n n 
C7 C8 DEX sing 97 n n 
C7 H71 DEX sing 98 n n 
C7 H72 DEX sing 99 n n 
C8 C9 DEX sing 100 n n 
C8 C14 DEX sing 101 n n 
C8 H8 DEX sing 102 n n 
C9 C10 DEX sing 103 n n 
C9 C11 DEX sing 104 n n 
C9 F1 DEX sing 105 n n 
C10 C19 DEX sing 106 n n 
C11 C12 DEX sing 107 n n 
C11 O2 DEX sing 108 n n 
C11 H11 DEX sing 109 n n 
C12 C13 DEX sing 110 n n 
C12 H211 DEX sing 111 n n 
C12 H221 DEX sing 112 n n 
C13 C14 DEX sing 113 n n 
C13 C17 DEX sing 114 n n 
C13 C18 DEX sing 115 n n 
C14 C15 DEX sing 116 n n 
C14 H14 DEX sing 117 n n 
C15 C16 DEX sing 118 n n 
C15 H511 DEX sing 119 n n 
C15 H521 DEX sing 120 n n 
C16 C17 DEX sing 121 n n 
C16 C22 DEX sing 122 n n 
C16 H16 DEX sing 123 n n 
C17 C20 DEX sing 124 n n 
C17 O3 DEX sing 125 n n 
C18 H811 DEX sing 126 n n 
C18 H821 DEX sing 127 n n 
C18 H831 DEX sing 128 n n 
C19 H911 DEX sing 129 n n 
C19 H921 DEX sing 130 n n 
C19 H931 DEX sing 131 n n 
C20 C21 DEX sing 132 n n 
C20 O4 DEX doub 133 n n 
C21 O5 DEX sing 134 n n 
C21 H112 DEX sing 135 n n 
C21 H122 DEX sing 136 n n 
C22 H212 DEX sing 137 n n 
C22 H222 DEX sing 138 n n 
C22 H232 DEX sing 139 n n 
O2 HO2 DEX sing 140 n n 
O3 H3 DEX sing 141 n n 
O5 H5 DEX sing 142 n n 
#
_atom_sites.entry_id                     3GN8 
_atom_sites.fract_transf_matrix[1][1]    0.009595 
_atom_sites.fract_transf_matrix[1][2]    0.00554 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 DEX A 1 247 1 DEX DEX . 
F 3 DEX B 1 247 1 DEX DEX . 
G 4 HOH A 1 248 4 HOH HOH . 
G 4 HOH A 2 249 5 HOH HOH . 
G 4 HOH A 3 250 7 HOH HOH . 
G 4 HOH A 4 251 8 HOH HOH . 
G 4 HOH A 5 252 11 HOH HOH . 
G 4 HOH A 6 253 13 HOH HOH . 
G 4 HOH A 7 254 17 HOH HOH . 
G 4 HOH A 8 255 23 HOH HOH . 
G 4 HOH A 9 256 24 HOH HOH . 
G 4 HOH A 10 257 25 HOH HOH . 
G 4 HOH A 11 258 26 HOH HOH . 
G 4 HOH A 12 259 27 HOH HOH . 
G 4 HOH A 13 260 33 HOH HOH . 
G 4 HOH A 14 261 35 HOH HOH . 
G 4 HOH A 15 262 37 HOH HOH . 
G 4 HOH A 16 263 40 HOH HOH . 
G 4 HOH A 17 264 41 HOH HOH . 
G 4 HOH A 18 265 42 HOH HOH . 
G 4 HOH A 19 266 43 HOH HOH . 
G 4 HOH A 20 267 46 HOH HOH . 
G 4 HOH A 21 268 47 HOH HOH . 
G 4 HOH A 22 269 48 HOH HOH . 
G 4 HOH A 23 270 50 HOH HOH . 
G 4 HOH A 24 271 51 HOH HOH . 
G 4 HOH A 25 272 54 HOH HOH . 
G 4 HOH A 26 273 55 HOH HOH . 
G 4 HOH A 27 274 61 HOH HOH . 
G 4 HOH A 28 275 62 HOH HOH . 
G 4 HOH A 29 276 64 HOH HOH . 
G 4 HOH A 30 277 68 HOH HOH . 
G 4 HOH A 31 278 69 HOH HOH . 
G 4 HOH A 32 279 70 HOH HOH . 
G 4 HOH A 33 280 72 HOH HOH . 
G 4 HOH A 34 281 73 HOH HOH . 
G 4 HOH A 35 282 74 HOH HOH . 
G 4 HOH A 36 283 76 HOH HOH . 
G 4 HOH A 37 284 77 HOH HOH . 
G 4 HOH A 38 285 80 HOH HOH . 
G 4 HOH A 39 286 81 HOH HOH . 
G 4 HOH A 40 287 82 HOH HOH . 
G 4 HOH A 41 288 84 HOH HOH . 
G 4 HOH A 42 289 85 HOH HOH . 
G 4 HOH A 43 290 86 HOH HOH . 
G 4 HOH A 44 291 88 HOH HOH . 
G 4 HOH A 45 292 89 HOH HOH . 
G 4 HOH A 46 293 90 HOH HOH . 
G 4 HOH A 47 294 91 HOH HOH . 
G 4 HOH A 48 295 93 HOH HOH . 
G 4 HOH A 49 296 95 HOH HOH . 
G 4 HOH A 50 297 96 HOH HOH . 
G 4 HOH A 51 298 98 HOH HOH . 
G 4 HOH A 52 299 101 HOH HOH . 
G 4 HOH A 53 300 102 HOH HOH . 
G 4 HOH A 54 301 103 HOH HOH . 
G 4 HOH A 55 302 104 HOH HOH . 
G 4 HOH A 56 303 105 HOH HOH . 
G 4 HOH A 57 304 106 HOH HOH . 
G 4 HOH A 58 305 107 HOH HOH . 
G 4 HOH A 59 306 108 HOH HOH . 
G 4 HOH A 60 307 109 HOH HOH . 
G 4 HOH A 61 308 111 HOH HOH . 
G 4 HOH A 62 309 112 HOH HOH . 
G 4 HOH A 63 310 114 HOH HOH . 
G 4 HOH A 64 311 116 HOH HOH . 
G 4 HOH A 65 312 117 HOH HOH . 
G 4 HOH A 66 313 118 HOH HOH . 
G 4 HOH A 67 314 123 HOH HOH . 
G 4 HOH A 68 315 125 HOH HOH . 
G 4 HOH A 69 316 126 HOH HOH . 
G 4 HOH A 70 317 128 HOH HOH . 
G 4 HOH A 71 318 130 HOH HOH . 
G 4 HOH A 72 319 134 HOH HOH . 
G 4 HOH A 73 320 137 HOH HOH . 
G 4 HOH A 74 321 138 HOH HOH . 
G 4 HOH A 75 322 139 HOH HOH . 
G 4 HOH A 76 323 140 HOH HOH . 
G 4 HOH A 77 324 141 HOH HOH . 
G 4 HOH A 78 325 142 HOH HOH . 
G 4 HOH A 79 326 143 HOH HOH . 
G 4 HOH A 80 327 144 HOH HOH . 
G 4 HOH A 81 328 145 HOH HOH . 
G 4 HOH A 82 329 153 HOH HOH . 
H 4 HOH B 1 248 1 HOH HOH . 
H 4 HOH B 2 249 2 HOH HOH . 
H 4 HOH B 3 250 3 HOH HOH . 
H 4 HOH B 4 251 6 HOH HOH . 
H 4 HOH B 5 252 9 HOH HOH . 
H 4 HOH B 6 253 10 HOH HOH . 
H 4 HOH B 7 254 12 HOH HOH . 
H 4 HOH B 8 255 14 HOH HOH . 
H 4 HOH B 9 256 15 HOH HOH . 
H 4 HOH B 10 257 16 HOH HOH . 
H 4 HOH B 11 258 18 HOH HOH . 
H 4 HOH B 12 259 19 HOH HOH . 
H 4 HOH B 13 260 20 HOH HOH . 
H 4 HOH B 14 261 21 HOH HOH . 
H 4 HOH B 15 262 22 HOH HOH . 
H 4 HOH B 16 263 28 HOH HOH . 
H 4 HOH B 17 264 29 HOH HOH . 
H 4 HOH B 18 265 30 HOH HOH . 
H 4 HOH B 19 266 31 HOH HOH . 
H 4 HOH B 20 267 32 HOH HOH . 
H 4 HOH B 21 268 34 HOH HOH . 
H 4 HOH B 22 269 36 HOH HOH . 
H 4 HOH B 23 270 38 HOH HOH . 
H 4 HOH B 24 271 39 HOH HOH . 
H 4 HOH B 25 272 44 HOH HOH . 
H 4 HOH B 26 273 45 HOH HOH . 
H 4 HOH B 27 274 49 HOH HOH . 
H 4 HOH B 28 275 52 HOH HOH . 
H 4 HOH B 29 276 53 HOH HOH . 
H 4 HOH B 30 277 56 HOH HOH . 
H 4 HOH B 31 278 57 HOH HOH . 
H 4 HOH B 32 279 58 HOH HOH . 
H 4 HOH B 33 280 59 HOH HOH . 
H 4 HOH B 34 281 60 HOH HOH . 
H 4 HOH B 35 282 63 HOH HOH . 
H 4 HOH B 36 283 65 HOH HOH . 
H 4 HOH B 37 284 66 HOH HOH . 
H 4 HOH B 38 285 67 HOH HOH . 
H 4 HOH B 39 286 71 HOH HOH . 
H 4 HOH B 40 287 75 HOH HOH . 
H 4 HOH B 41 288 78 HOH HOH . 
H 4 HOH B 42 289 79 HOH HOH . 
H 4 HOH B 43 290 83 HOH HOH . 
H 4 HOH B 44 291 87 HOH HOH . 
H 4 HOH B 45 292 92 HOH HOH . 
H 4 HOH B 46 293 94 HOH HOH . 
H 4 HOH B 47 294 97 HOH HOH . 
H 4 HOH B 48 295 99 HOH HOH . 
H 4 HOH B 49 296 100 HOH HOH . 
H 4 HOH B 50 297 110 HOH HOH . 
H 4 HOH B 51 298 113 HOH HOH . 
H 4 HOH B 52 299 115 HOH HOH . 
H 4 HOH B 53 300 119 HOH HOH . 
H 4 HOH B 54 301 120 HOH HOH . 
H 4 HOH B 55 302 121 HOH HOH . 
H 4 HOH B 56 303 122 HOH HOH . 
H 4 HOH B 57 304 124 HOH HOH . 
H 4 HOH B 58 305 127 HOH HOH . 
H 4 HOH B 59 306 129 HOH HOH . 
H 4 HOH B 60 307 131 HOH HOH . 
H 4 HOH B 61 308 132 HOH HOH . 
H 4 HOH B 62 309 133 HOH HOH . 
H 4 HOH B 63 310 135 HOH HOH . 
H 4 HOH B 64 311 136 HOH HOH . 
H 4 HOH B 65 312 146 HOH HOH . 
H 4 HOH B 66 313 147 HOH HOH . 
H 4 HOH B 67 314 148 HOH HOH . 
H 4 HOH B 68 315 149 HOH HOH . 
H 4 HOH B 69 316 150 HOH HOH . 
H 4 HOH B 70 317 151 HOH HOH . 
H 4 HOH B 71 318 152 HOH HOH . 
H 4 HOH B 72 319 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEX . . . E 3 -35.454 -13.988 -9.329 1 22.66 ? C1 DEX 247 A 1 
HETATM 2 C C2 DEX . . . E 3 -34.421 -13.05 -9.316 1 18.71 ? C2 DEX 247 A 1 
HETATM 3 C C3 DEX . . . E 3 -33.604 -12.913 -8.179 1 30.94 ? C3 DEX 247 A 1 
HETATM 4 C C4 DEX . . . E 3 -33.848 -13.742 -7.072 1 21.55 ? C4 DEX 247 A 1 
HETATM 5 C C5 DEX . . . E 3 -34.865 -14.682 -7.098 1 18.81 ? C5 DEX 247 A 1 
HETATM 6 C C6 DEX . . . E 3 -35.043 -15.477 -5.93 1 30.85 ? C6 DEX 247 A 1 
HETATM 7 C C7 DEX . . . E 3 -36.522 -15.475 -5.429 1 22.43 ? C7 DEX 247 A 1 
HETATM 8 C C8 DEX . . . E 3 -37.495 -15.703 -6.624 1 22.36 ? C8 DEX 247 A 1 
HETATM 9 C C9 DEX . . . E 3 -37.168 -14.693 -7.762 1 22.61 ? C9 DEX 247 A 1 
HETATM 10 C C10 DEX . . . E 3 -35.709 -14.87 -8.235 1 24.64 ? C10 DEX 247 A 1 
HETATM 11 C C11 DEX . . . E 3 -38.202 -14.762 -8.925 1 22.17 ? C11 DEX 247 A 1 
HETATM 12 C C12 DEX . . . E 3 -39.665 -14.643 -8.458 1 22.92 ? C12 DEX 247 A 1 
HETATM 13 C C13 DEX . . . E 3 -39.956 -15.651 -7.321 1 24.23 ? C13 DEX 247 A 1 
HETATM 14 C C14 DEX . . . E 3 -38.933 -15.42 -6.179 1 24.02 ? C14 DEX 247 A 1 
HETATM 15 C C15 DEX . . . E 3 -39.458 -16.269 -4.995 1 24.57 ? C15 DEX 247 A 1 
HETATM 16 C C16 DEX . . . E 3 -41.013 -16.166 -5.192 1 25.57 ? C16 DEX 247 A 1 
HETATM 17 C C17 DEX . . . E 3 -41.242 -15.372 -6.503 1 25.59 ? C17 DEX 247 A 1 
HETATM 18 C C18 DEX . . . E 3 -39.95 -17.086 -7.873 1 23.45 ? C18 DEX 247 A 1 
HETATM 19 C C19 DEX . . . E 3 -35.418 -16.306 -8.756 1 20.94 ? C19 DEX 247 A 1 
HETATM 20 C C20 DEX . . . E 3 -42.519 -15.816 -7.184 1 27.52 ? C20 DEX 247 A 1 
HETATM 21 C C21 DEX . . . E 3 -43.214 -14.777 -8.055 1 27.18 ? C21 DEX 247 A 1 
HETATM 22 C C22 DEX . . . E 3 -41.649 -15.455 -4.001 1 24.69 ? C22 DEX 247 A 1 
HETATM 23 F F1 DEX . . . E 3 -37.236 -13.408 -7.182 1 19.36 ? F1 DEX 247 A 1 
HETATM 24 O O1 DEX . . . E 3 -32.693 -12.077 -8.128 1 19.46 ? O1 DEX 247 A 1 
HETATM 25 O O2 DEX . . . E 3 -38.04 -15.987 -9.669 1 23.56 ? O2 DEX 247 A 1 
HETATM 26 O O3 DEX . . . E 3 -41.405 -13.993 -6.205 1 26.25 ? O3 DEX 247 A 1 
HETATM 27 O O4 DEX . . . E 3 -42.983 -16.943 -7.036 1 30.92 ? O4 DEX 247 A 1 
HETATM 28 O O5 DEX . . . E 3 -44.024 -15.479 -8.986 1 28.26 ? O5 DEX 247 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           403 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           28 
#