data_3GNC
#
_model_server_result.job_id            0h3nInGMgl6zGISFdJkFrw 
_model_server_result.datetime_utc      '2024-11-09 23:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gnc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":397}' 
#
_entry.id    3GNC 
#
_exptl.entry_id    3GNC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.279 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-(1-methylethyl)-1H-benzimidazole-2-sulfonic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GNC 
_cell.length_a            98.239 
_cell.length_b            106.104 
_cell.length_c            144.239 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GNC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C10 H12 N2 O3 S' 
_chem_comp.formula_weight    240.279 
_chem_comp.id                QQQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-(1-methylethyl)-1H-benzimidazole-2-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S10 O11 QQQ sing 310 n n 
O11 HO11 QQQ sing 311 n n 
O13 S10 QQQ doub 312 n n 
C8 S10 QQQ sing 313 n n 
S10 O12 QQQ doub 314 n n 
N7 C8 QQQ doub 315 n y 
C8 N9 QQQ sing 316 n y 
C3 N7 QQQ sing 317 n y 
C4 C3 QQQ doub 318 n y 
C3 C2 QQQ sing 319 n y 
C4 C5 QQQ sing 320 n y 
C4 H4 QQQ sing 321 n n 
C5 C6 QQQ doub 322 n y 
C5 H5 QQQ sing 323 n n 
C6 C1 QQQ sing 324 n y 
C6 H6 QQQ sing 325 n n 
C2 C1 QQQ doub 326 n y 
C1 H1 QQQ sing 327 n n 
C2 N9 QQQ sing 328 n y 
N9 C14 QQQ sing 329 n n 
C14 C16 QQQ sing 330 n n 
C14 C15 QQQ sing 331 n n 
C14 H14 QQQ sing 332 n n 
C15 H15 QQQ sing 333 n n 
C15 H15A QQQ sing 334 n n 
C15 H15B QQQ sing 335 n n 
C16 H16 QQQ sing 336 n n 
C16 H16A QQQ sing 337 n n 
C16 H16B QQQ sing 338 n n 
#
_atom_sites.entry_id                     3GNC 
_atom_sites.fract_transf_matrix[1][1]    0.010179 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006933 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 396 4 SO4 SO4 . 
F 3 QQQ A 1 397 1 QQQ QQQ . 
G 3 QQQ B 1 396 2 QQQ QQQ . 
H 4 EPE B 1 397 3 EPE EPE . 
I 3 QQQ C 1 396 3 QQQ QQQ . 
J 4 EPE C 1 397 2 EPE EPE . 
K 3 QQQ D 1 396 4 QQQ QQQ . 
L 4 EPE D 1 397 1 EPE EPE . 
M 5 HOH A 1 398 4 HOH HOH . 
M 5 HOH A 2 399 7 HOH HOH . 
M 5 HOH A 3 400 10 HOH HOH . 
M 5 HOH A 4 401 13 HOH HOH . 
M 5 HOH A 5 402 15 HOH HOH . 
M 5 HOH A 6 403 18 HOH HOH . 
M 5 HOH A 7 404 23 HOH HOH . 
M 5 HOH A 8 405 24 HOH HOH . 
M 5 HOH A 9 406 31 HOH HOH . 
M 5 HOH A 10 407 32 HOH HOH . 
M 5 HOH A 11 408 37 HOH HOH . 
M 5 HOH A 12 409 42 HOH HOH . 
M 5 HOH A 13 410 47 HOH HOH . 
M 5 HOH A 14 411 51 HOH HOH . 
M 5 HOH A 15 412 52 HOH HOH . 
M 5 HOH A 16 413 58 HOH HOH . 
M 5 HOH A 17 414 61 HOH HOH . 
M 5 HOH A 18 415 64 HOH HOH . 
M 5 HOH A 19 416 66 HOH HOH . 
M 5 HOH A 20 417 67 HOH HOH . 
M 5 HOH A 21 418 68 HOH HOH . 
M 5 HOH A 22 419 75 HOH HOH . 
M 5 HOH A 23 420 77 HOH HOH . 
M 5 HOH A 24 421 79 HOH HOH . 
M 5 HOH A 25 422 83 HOH HOH . 
M 5 HOH A 26 423 86 HOH HOH . 
M 5 HOH A 27 424 93 HOH HOH . 
M 5 HOH A 28 425 95 HOH HOH . 
M 5 HOH A 29 426 103 HOH HOH . 
M 5 HOH A 30 427 104 HOH HOH . 
M 5 HOH A 31 428 112 HOH HOH . 
M 5 HOH A 32 429 114 HOH HOH . 
M 5 HOH A 33 430 121 HOH HOH . 
M 5 HOH A 34 431 132 HOH HOH . 
M 5 HOH A 35 432 141 HOH HOH . 
M 5 HOH A 36 433 145 HOH HOH . 
M 5 HOH A 37 434 148 HOH HOH . 
M 5 HOH A 38 435 151 HOH HOH . 
M 5 HOH A 39 436 159 HOH HOH . 
M 5 HOH A 40 437 163 HOH HOH . 
M 5 HOH A 41 438 174 HOH HOH . 
M 5 HOH A 42 439 175 HOH HOH . 
M 5 HOH A 43 440 177 HOH HOH . 
M 5 HOH A 44 441 178 HOH HOH . 
M 5 HOH A 45 442 179 HOH HOH . 
M 5 HOH A 46 443 192 HOH HOH . 
M 5 HOH A 47 444 197 HOH HOH . 
M 5 HOH A 48 445 202 HOH HOH . 
M 5 HOH A 49 446 207 HOH HOH . 
M 5 HOH A 50 447 209 HOH HOH . 
N 5 HOH B 1 398 1 HOH HOH . 
N 5 HOH B 2 399 6 HOH HOH . 
N 5 HOH B 3 400 12 HOH HOH . 
N 5 HOH B 4 401 14 HOH HOH . 
N 5 HOH B 5 402 22 HOH HOH . 
N 5 HOH B 6 403 25 HOH HOH . 
N 5 HOH B 7 404 38 HOH HOH . 
N 5 HOH B 8 405 49 HOH HOH . 
N 5 HOH B 9 406 53 HOH HOH . 
N 5 HOH B 10 407 63 HOH HOH . 
N 5 HOH B 11 408 76 HOH HOH . 
N 5 HOH B 12 409 92 HOH HOH . 
N 5 HOH B 13 410 97 HOH HOH . 
N 5 HOH B 14 411 99 HOH HOH . 
N 5 HOH B 15 412 105 HOH HOH . 
N 5 HOH B 16 413 107 HOH HOH . 
N 5 HOH B 17 414 110 HOH HOH . 
N 5 HOH B 18 415 115 HOH HOH . 
N 5 HOH B 19 416 117 HOH HOH . 
N 5 HOH B 20 417 120 HOH HOH . 
N 5 HOH B 21 418 125 HOH HOH . 
N 5 HOH B 22 419 131 HOH HOH . 
N 5 HOH B 23 420 133 HOH HOH . 
N 5 HOH B 24 421 135 HOH HOH . 
N 5 HOH B 25 422 136 HOH HOH . 
N 5 HOH B 26 423 137 HOH HOH . 
N 5 HOH B 27 424 138 HOH HOH . 
N 5 HOH B 28 425 140 HOH HOH . 
N 5 HOH B 29 426 142 HOH HOH . 
N 5 HOH B 30 427 144 HOH HOH . 
N 5 HOH B 31 428 146 HOH HOH . 
N 5 HOH B 32 429 149 HOH HOH . 
N 5 HOH B 33 430 152 HOH HOH . 
N 5 HOH B 34 431 153 HOH HOH . 
N 5 HOH B 35 432 157 HOH HOH . 
N 5 HOH B 36 433 166 HOH HOH . 
N 5 HOH B 37 434 171 HOH HOH . 
N 5 HOH B 38 435 181 HOH HOH . 
N 5 HOH B 39 436 183 HOH HOH . 
N 5 HOH B 40 437 185 HOH HOH . 
N 5 HOH B 41 438 187 HOH HOH . 
N 5 HOH B 42 439 190 HOH HOH . 
N 5 HOH B 43 440 191 HOH HOH . 
N 5 HOH B 44 441 194 HOH HOH . 
N 5 HOH B 45 442 196 HOH HOH . 
N 5 HOH B 46 443 198 HOH HOH . 
N 5 HOH B 47 444 199 HOH HOH . 
N 5 HOH B 48 445 200 HOH HOH . 
N 5 HOH B 49 446 201 HOH HOH . 
N 5 HOH B 50 447 205 HOH HOH . 
N 5 HOH B 51 448 208 HOH HOH . 
O 5 HOH C 1 398 9 HOH HOH . 
O 5 HOH C 2 399 11 HOH HOH . 
O 5 HOH C 3 400 16 HOH HOH . 
O 5 HOH C 4 401 19 HOH HOH . 
O 5 HOH C 5 402 20 HOH HOH . 
O 5 HOH C 6 403 21 HOH HOH . 
O 5 HOH C 7 404 26 HOH HOH . 
O 5 HOH C 8 405 27 HOH HOH . 
O 5 HOH C 9 406 28 HOH HOH . 
O 5 HOH C 10 407 30 HOH HOH . 
O 5 HOH C 11 408 33 HOH HOH . 
O 5 HOH C 12 409 34 HOH HOH . 
O 5 HOH C 13 410 35 HOH HOH . 
O 5 HOH C 14 411 39 HOH HOH . 
O 5 HOH C 15 412 40 HOH HOH . 
O 5 HOH C 16 413 41 HOH HOH . 
O 5 HOH C 17 414 48 HOH HOH . 
O 5 HOH C 18 415 57 HOH HOH . 
O 5 HOH C 19 416 60 HOH HOH . 
O 5 HOH C 20 417 78 HOH HOH . 
O 5 HOH C 21 418 80 HOH HOH . 
O 5 HOH C 22 419 81 HOH HOH . 
O 5 HOH C 23 420 82 HOH HOH . 
O 5 HOH C 24 421 84 HOH HOH . 
O 5 HOH C 25 422 89 HOH HOH . 
O 5 HOH C 26 423 90 HOH HOH . 
O 5 HOH C 27 424 94 HOH HOH . 
O 5 HOH C 28 425 98 HOH HOH . 
O 5 HOH C 29 426 100 HOH HOH . 
O 5 HOH C 30 427 101 HOH HOH . 
O 5 HOH C 31 428 108 HOH HOH . 
O 5 HOH C 32 429 111 HOH HOH . 
O 5 HOH C 33 430 118 HOH HOH . 
O 5 HOH C 34 431 122 HOH HOH . 
O 5 HOH C 35 432 123 HOH HOH . 
O 5 HOH C 36 433 128 HOH HOH . 
O 5 HOH C 37 434 129 HOH HOH . 
O 5 HOH C 38 435 134 HOH HOH . 
O 5 HOH C 39 436 139 HOH HOH . 
O 5 HOH C 40 437 143 HOH HOH . 
O 5 HOH C 41 438 155 HOH HOH . 
O 5 HOH C 42 439 161 HOH HOH . 
O 5 HOH C 43 440 162 HOH HOH . 
O 5 HOH C 44 441 167 HOH HOH . 
O 5 HOH C 45 442 172 HOH HOH . 
O 5 HOH C 46 443 180 HOH HOH . 
O 5 HOH C 47 444 186 HOH HOH . 
O 5 HOH C 48 445 195 HOH HOH . 
O 5 HOH C 49 446 204 HOH HOH . 
O 5 HOH C 50 447 206 HOH HOH . 
P 5 HOH D 1 398 2 HOH HOH . 
P 5 HOH D 2 399 3 HOH HOH . 
P 5 HOH D 3 400 5 HOH HOH . 
P 5 HOH D 4 401 8 HOH HOH . 
P 5 HOH D 5 402 17 HOH HOH . 
P 5 HOH D 6 403 29 HOH HOH . 
P 5 HOH D 7 404 36 HOH HOH . 
P 5 HOH D 8 405 43 HOH HOH . 
P 5 HOH D 9 406 44 HOH HOH . 
P 5 HOH D 10 407 45 HOH HOH . 
P 5 HOH D 11 408 46 HOH HOH . 
P 5 HOH D 12 409 50 HOH HOH . 
P 5 HOH D 13 410 54 HOH HOH . 
P 5 HOH D 14 411 55 HOH HOH . 
P 5 HOH D 15 412 56 HOH HOH . 
P 5 HOH D 16 413 59 HOH HOH . 
P 5 HOH D 17 414 62 HOH HOH . 
P 5 HOH D 18 415 65 HOH HOH . 
P 5 HOH D 19 416 69 HOH HOH . 
P 5 HOH D 20 417 70 HOH HOH . 
P 5 HOH D 21 418 71 HOH HOH . 
P 5 HOH D 22 419 72 HOH HOH . 
P 5 HOH D 23 420 73 HOH HOH . 
P 5 HOH D 24 421 74 HOH HOH . 
P 5 HOH D 25 422 85 HOH HOH . 
P 5 HOH D 26 423 87 HOH HOH . 
P 5 HOH D 27 424 88 HOH HOH . 
P 5 HOH D 28 425 91 HOH HOH . 
P 5 HOH D 29 426 96 HOH HOH . 
P 5 HOH D 30 427 102 HOH HOH . 
P 5 HOH D 31 428 106 HOH HOH . 
P 5 HOH D 32 429 109 HOH HOH . 
P 5 HOH D 33 430 113 HOH HOH . 
P 5 HOH D 34 431 116 HOH HOH . 
P 5 HOH D 35 432 119 HOH HOH . 
P 5 HOH D 36 433 124 HOH HOH . 
P 5 HOH D 37 434 126 HOH HOH . 
P 5 HOH D 38 435 127 HOH HOH . 
P 5 HOH D 39 436 130 HOH HOH . 
P 5 HOH D 40 437 147 HOH HOH . 
P 5 HOH D 41 438 150 HOH HOH . 
P 5 HOH D 42 439 154 HOH HOH . 
P 5 HOH D 43 440 156 HOH HOH . 
P 5 HOH D 44 441 158 HOH HOH . 
P 5 HOH D 45 442 160 HOH HOH . 
P 5 HOH D 46 443 164 HOH HOH . 
P 5 HOH D 47 444 165 HOH HOH . 
P 5 HOH D 48 445 168 HOH HOH . 
P 5 HOH D 49 446 169 HOH HOH . 
P 5 HOH D 50 447 170 HOH HOH . 
P 5 HOH D 51 448 173 HOH HOH . 
P 5 HOH D 52 449 176 HOH HOH . 
P 5 HOH D 53 450 182 HOH HOH . 
P 5 HOH D 54 451 184 HOH HOH . 
P 5 HOH D 55 452 188 HOH HOH . 
P 5 HOH D 56 453 189 HOH HOH . 
P 5 HOH D 57 454 193 HOH HOH . 
P 5 HOH D 58 455 203 HOH HOH . 
P 5 HOH D 59 456 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 QQQ . . . F 3 -5.61 38.883 -2.129 1 44.08 ? O11 QQQ 397 A 1 
HETATM 2 S S10 QQQ . . . F 3 -4.854 38.676 -0.931 1 44.65 ? S10 QQQ 397 A 1 
HETATM 3 O O13 QQQ . . . F 3 -5.346 39.562 0.09 1 45.18 ? O13 QQQ 397 A 1 
HETATM 4 O O12 QQQ . . . F 3 -3.282 38.979 -1.147 1 44.52 ? O12 QQQ 397 A 1 
HETATM 5 C C8 QQQ . . . F 3 -5.074 37.121 -0.412 1 44.87 ? C8 QQQ 397 A 1 
HETATM 6 N N7 QQQ . . . F 3 -5.57 36.923 0.828 1 44.85 ? N7 QQQ 397 A 1 
HETATM 7 C C3 QQQ . . . F 3 -5.624 35.582 0.952 1 45.76 ? C3 QQQ 397 A 1 
HETATM 8 C C4 QQQ . . . F 3 -6.037 34.729 1.967 1 44.5 ? C4 QQQ 397 A 1 
HETATM 9 C C5 QQQ . . . F 3 -5.965 33.353 1.772 1 45.82 ? C5 QQQ 397 A 1 
HETATM 10 C C6 QQQ . . . F 3 -5.488 32.811 0.575 1 44.61 ? C6 QQQ 397 A 1 
HETATM 11 C C1 QQQ . . . F 3 -5.062 33.625 -0.468 1 44.93 ? C1 QQQ 397 A 1 
HETATM 12 C C2 QQQ . . . F 3 -5.115 35.006 -0.326 1 45.17 ? C2 QQQ 397 A 1 
HETATM 13 N N9 QQQ . . . F 3 -4.792 36.02 -1.131 1 44.24 ? N9 QQQ 397 A 1 
HETATM 14 C C14 QQQ . . . F 3 -4.211 35.877 -2.512 1 45.14 ? C14 QQQ 397 A 1 
HETATM 15 C C15 QQQ . . . F 3 -5.136 35.122 -3.464 1 42.63 ? C15 QQQ 397 A 1 
HETATM 16 C C16 QQQ . . . F 3 -2.872 35.144 -2.41 1 43.79 ? C16 QQQ 397 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#