data_3GNV # _model_server_result.job_id UBKVU8BrkgYs2rMAwnWaLQ _model_server_result.datetime_utc '2024-11-09 02:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":579}' # _entry.id 3GNV # _exptl.entry_id 3GNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.015 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (11R)-10-acetyl-11-[4-(benzyloxy)-2-chlorophenyl]-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GNV _cell.length_a 106.291 _cell.length_b 107.965 _cell.length_c 133.799 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C30 H29 Cl N2 O4' _chem_comp.formula_weight 517.015 _chem_comp.id XNZ _chem_comp.mon_nstd_flag . _chem_comp.name (11R)-10-acetyl-11-[4-(benzyloxy)-2-chlorophenyl]-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL37 C17 XNZ sing 389 n n C17 C18 XNZ doub 390 n y C17 C16 XNZ sing 391 n y C18 C19 XNZ sing 392 n y C19 O22 XNZ sing 393 n n C19 C20 XNZ doub 394 n y O22 C23 XNZ sing 395 n n C23 C24 XNZ sing 396 n n C24 C29 XNZ doub 397 n y C24 C25 XNZ sing 398 n y C29 C28 XNZ sing 399 n y C28 C27 XNZ doub 400 n y C27 C26 XNZ sing 401 n y C26 C25 XNZ doub 402 n y C20 C21 XNZ sing 403 n y C21 C16 XNZ doub 404 n y C16 C8 XNZ sing 405 n n C8 N7 XNZ sing 406 n n C8 C9 XNZ sing 407 n n N7 C30 XNZ sing 408 n n N7 C4 XNZ sing 409 n n C30 O32 XNZ doub 410 n n C30 C31 XNZ sing 411 n n C4 C3 XNZ doub 412 n y C4 C5 XNZ sing 413 n y C3 C2 XNZ sing 414 n y C2 C1 XNZ doub 415 n y C9 C12 XNZ sing 416 n n C9 C10 XNZ doub 417 n n C12 O36 XNZ doub 418 n n C12 C13 XNZ sing 419 n n C13 C14 XNZ sing 420 n n C14 C34 XNZ sing 421 n n C14 C35 XNZ sing 422 n n C14 C15 XNZ sing 423 n n C15 C10 XNZ sing 424 n n C10 N11 XNZ sing 425 n n N11 C5 XNZ sing 426 n n C5 C6 XNZ doub 427 n y C6 O33 XNZ sing 428 n n C6 C1 XNZ sing 429 n y C18 H18 XNZ sing 430 n n C23 H23 XNZ sing 431 n n C23 H23A XNZ sing 432 n n C29 H29 XNZ sing 433 n n C28 H28 XNZ sing 434 n n C27 H27 XNZ sing 435 n n C26 H26 XNZ sing 436 n n C25 H25 XNZ sing 437 n n C20 H20 XNZ sing 438 n n C21 H21 XNZ sing 439 n n C8 H8 XNZ sing 440 n n C31 H31 XNZ sing 441 n n C31 H31A XNZ sing 442 n n C31 H31B XNZ sing 443 n n C3 H3 XNZ sing 444 n n C2 H2 XNZ sing 445 n n C13 H13 XNZ sing 446 n n C13 H13A XNZ sing 447 n n C34 H34 XNZ sing 448 n n C34 H34A XNZ sing 449 n n C34 H34B XNZ sing 450 n n C35 H35 XNZ sing 451 n n C35 H35A XNZ sing 452 n n C35 H35B XNZ sing 453 n n C15 H15 XNZ sing 454 n n C15 H15A XNZ sing 455 n n N11 HN11 XNZ sing 456 n n O33 HO33 XNZ sing 457 n n C1 H1 XNZ sing 458 n n # _atom_sites.entry_id 3GNV _atom_sites.fract_transf_matrix[1][1] 0.009408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XNZ A 1 579 1 XNZ INX . D 3 GOL A 1 580 2 GOL GOL . E 2 XNZ B 1 579 2 XNZ INX . F 3 GOL B 1 580 1 GOL GOL . G 4 HOH A 1 581 1 HOH HOH . G 4 HOH A 2 582 3 HOH HOH . G 4 HOH A 3 583 5 HOH HOH . G 4 HOH A 4 584 6 HOH HOH . G 4 HOH A 5 585 7 HOH HOH . G 4 HOH A 6 586 8 HOH HOH . G 4 HOH A 7 587 9 HOH HOH . G 4 HOH A 8 588 10 HOH HOH . G 4 HOH A 9 589 13 HOH HOH . G 4 HOH A 10 590 14 HOH HOH . G 4 HOH A 11 591 15 HOH HOH . G 4 HOH A 12 592 18 HOH HOH . G 4 HOH A 13 593 19 HOH HOH . G 4 HOH A 14 594 20 HOH HOH . G 4 HOH A 15 595 22 HOH HOH . G 4 HOH A 16 596 23 HOH HOH . G 4 HOH A 17 597 24 HOH HOH . G 4 HOH A 18 598 25 HOH HOH . G 4 HOH A 19 599 28 HOH HOH . G 4 HOH A 20 600 29 HOH HOH . G 4 HOH A 21 601 30 HOH HOH . G 4 HOH A 22 602 31 HOH HOH . G 4 HOH A 23 603 33 HOH HOH . G 4 HOH A 24 604 34 HOH HOH . G 4 HOH A 25 605 35 HOH HOH . G 4 HOH A 26 606 36 HOH HOH . G 4 HOH A 27 607 38 HOH HOH . G 4 HOH A 28 608 39 HOH HOH . G 4 HOH A 29 609 40 HOH HOH . G 4 HOH A 30 610 41 HOH HOH . G 4 HOH A 31 611 42 HOH HOH . G 4 HOH A 32 612 43 HOH HOH . G 4 HOH A 33 613 46 HOH HOH . G 4 HOH A 34 614 47 HOH HOH . G 4 HOH A 35 615 50 HOH HOH . G 4 HOH A 36 616 51 HOH HOH . G 4 HOH A 37 617 53 HOH HOH . G 4 HOH A 38 618 57 HOH HOH . G 4 HOH A 39 619 59 HOH HOH . G 4 HOH A 40 620 61 HOH HOH . G 4 HOH A 41 621 67 HOH HOH . G 4 HOH A 42 622 68 HOH HOH . G 4 HOH A 43 623 69 HOH HOH . G 4 HOH A 44 624 70 HOH HOH . G 4 HOH A 45 625 73 HOH HOH . G 4 HOH A 46 626 75 HOH HOH . G 4 HOH A 47 627 79 HOH HOH . G 4 HOH A 48 628 80 HOH HOH . G 4 HOH A 49 629 82 HOH HOH . G 4 HOH A 50 630 83 HOH HOH . G 4 HOH A 51 631 85 HOH HOH . G 4 HOH A 52 632 86 HOH HOH . G 4 HOH A 53 633 87 HOH HOH . G 4 HOH A 54 634 88 HOH HOH . G 4 HOH A 55 635 91 HOH HOH . G 4 HOH A 56 636 92 HOH HOH . G 4 HOH A 57 637 93 HOH HOH . G 4 HOH A 58 638 94 HOH HOH . G 4 HOH A 59 639 99 HOH HOH . G 4 HOH A 60 640 101 HOH HOH . G 4 HOH A 61 641 103 HOH HOH . G 4 HOH A 62 642 105 HOH HOH . G 4 HOH A 63 643 106 HOH HOH . G 4 HOH A 64 644 107 HOH HOH . G 4 HOH A 65 645 108 HOH HOH . G 4 HOH A 66 646 112 HOH HOH . G 4 HOH A 67 647 114 HOH HOH . G 4 HOH A 68 648 115 HOH HOH . G 4 HOH A 69 649 116 HOH HOH . G 4 HOH A 70 650 117 HOH HOH . G 4 HOH A 71 651 118 HOH HOH . G 4 HOH A 72 652 121 HOH HOH . G 4 HOH A 73 653 123 HOH HOH . G 4 HOH A 74 654 125 HOH HOH . G 4 HOH A 75 655 127 HOH HOH . G 4 HOH A 76 656 128 HOH HOH . G 4 HOH A 77 657 131 HOH HOH . G 4 HOH A 78 658 132 HOH HOH . G 4 HOH A 79 659 133 HOH HOH . G 4 HOH A 80 660 134 HOH HOH . G 4 HOH A 81 661 135 HOH HOH . G 4 HOH A 82 662 136 HOH HOH . G 4 HOH A 83 663 141 HOH HOH . G 4 HOH A 84 664 142 HOH HOH . G 4 HOH A 85 665 144 HOH HOH . G 4 HOH A 86 666 145 HOH HOH . G 4 HOH A 87 667 146 HOH HOH . G 4 HOH A 88 668 148 HOH HOH . G 4 HOH A 89 669 149 HOH HOH . G 4 HOH A 90 670 150 HOH HOH . G 4 HOH A 91 671 151 HOH HOH . G 4 HOH A 92 672 152 HOH HOH . G 4 HOH A 93 673 154 HOH HOH . G 4 HOH A 94 674 156 HOH HOH . G 4 HOH A 95 675 158 HOH HOH . G 4 HOH A 96 676 159 HOH HOH . G 4 HOH A 97 677 160 HOH HOH . G 4 HOH A 98 678 161 HOH HOH . G 4 HOH A 99 679 162 HOH HOH . G 4 HOH A 100 680 163 HOH HOH . G 4 HOH A 101 681 166 HOH HOH . G 4 HOH A 102 682 167 HOH HOH . G 4 HOH A 103 683 170 HOH HOH . G 4 HOH A 104 684 172 HOH HOH . G 4 HOH A 105 685 174 HOH HOH . G 4 HOH A 106 686 175 HOH HOH . G 4 HOH A 107 687 176 HOH HOH . G 4 HOH A 108 688 178 HOH HOH . G 4 HOH A 109 689 179 HOH HOH . G 4 HOH A 110 690 180 HOH HOH . G 4 HOH A 111 691 181 HOH HOH . H 4 HOH B 1 581 2 HOH HOH . H 4 HOH B 2 582 4 HOH HOH . H 4 HOH B 3 583 11 HOH HOH . H 4 HOH B 4 584 12 HOH HOH . H 4 HOH B 5 585 16 HOH HOH . H 4 HOH B 6 586 17 HOH HOH . H 4 HOH B 7 587 21 HOH HOH . H 4 HOH B 8 588 26 HOH HOH . H 4 HOH B 9 589 27 HOH HOH . H 4 HOH B 10 590 32 HOH HOH . H 4 HOH B 11 591 37 HOH HOH . H 4 HOH B 12 592 44 HOH HOH . H 4 HOH B 13 593 45 HOH HOH . H 4 HOH B 14 594 48 HOH HOH . H 4 HOH B 15 595 49 HOH HOH . H 4 HOH B 16 596 52 HOH HOH . H 4 HOH B 17 597 54 HOH HOH . H 4 HOH B 18 598 55 HOH HOH . H 4 HOH B 19 599 56 HOH HOH . H 4 HOH B 20 600 58 HOH HOH . H 4 HOH B 21 601 60 HOH HOH . H 4 HOH B 22 602 62 HOH HOH . H 4 HOH B 23 603 64 HOH HOH . H 4 HOH B 24 604 65 HOH HOH . H 4 HOH B 25 605 66 HOH HOH . H 4 HOH B 26 606 74 HOH HOH . H 4 HOH B 27 607 76 HOH HOH . H 4 HOH B 28 608 77 HOH HOH . H 4 HOH B 29 609 78 HOH HOH . H 4 HOH B 30 610 81 HOH HOH . H 4 HOH B 31 611 84 HOH HOH . H 4 HOH B 32 612 89 HOH HOH . H 4 HOH B 33 613 90 HOH HOH . H 4 HOH B 34 614 95 HOH HOH . H 4 HOH B 35 615 96 HOH HOH . H 4 HOH B 36 616 97 HOH HOH . H 4 HOH B 37 617 98 HOH HOH . H 4 HOH B 38 618 100 HOH HOH . H 4 HOH B 39 619 102 HOH HOH . H 4 HOH B 40 620 104 HOH HOH . H 4 HOH B 41 621 109 HOH HOH . H 4 HOH B 42 622 110 HOH HOH . H 4 HOH B 43 623 111 HOH HOH . H 4 HOH B 44 624 113 HOH HOH . H 4 HOH B 45 625 119 HOH HOH . H 4 HOH B 46 626 120 HOH HOH . H 4 HOH B 47 627 122 HOH HOH . H 4 HOH B 48 628 124 HOH HOH . H 4 HOH B 49 629 126 HOH HOH . H 4 HOH B 50 630 129 HOH HOH . H 4 HOH B 51 631 130 HOH HOH . H 4 HOH B 52 632 137 HOH HOH . H 4 HOH B 53 633 138 HOH HOH . H 4 HOH B 54 634 139 HOH HOH . H 4 HOH B 55 635 140 HOH HOH . H 4 HOH B 56 636 143 HOH HOH . H 4 HOH B 57 637 147 HOH HOH . H 4 HOH B 58 638 153 HOH HOH . H 4 HOH B 59 639 157 HOH HOH . H 4 HOH B 60 640 164 HOH HOH . H 4 HOH B 61 641 165 HOH HOH . H 4 HOH B 62 642 168 HOH HOH . H 4 HOH B 63 643 171 HOH HOH . H 4 HOH B 64 644 173 HOH HOH . H 4 HOH B 65 645 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL37 XNZ . . . E 2 27.435 105.243 125.836 1 34.81 ? CL37 XNZ 579 B 1 HETATM 2 C C17 XNZ . . . E 2 27.318 106.942 125.605 1 32.09 ? C17 XNZ 579 B 1 HETATM 3 C C18 XNZ . . . E 2 27.369 107.756 126.722 1 28.55 ? C18 XNZ 579 B 1 HETATM 4 C C19 XNZ . . . E 2 27.274 109.126 126.58 1 30.38 ? C19 XNZ 579 B 1 HETATM 5 O O22 XNZ . . . E 2 27.331 109.885 127.727 1 28.12 ? O22 XNZ 579 B 1 HETATM 6 C C23 XNZ . . . E 2 27.172 111.314 127.76 1 25.35 ? C23 XNZ 579 B 1 HETATM 7 C C24 XNZ . . . E 2 25.838 111.761 127.191 1 25.26 ? C24 XNZ 579 B 1 HETATM 8 C C29 XNZ . . . E 2 25.771 112.854 126.33 1 22.02 ? C29 XNZ 579 B 1 HETATM 9 C C28 XNZ . . . E 2 24.555 113.253 125.813 1 20.92 ? C28 XNZ 579 B 1 HETATM 10 C C27 XNZ . . . E 2 23.403 112.555 126.15 1 20.63 ? C27 XNZ 579 B 1 HETATM 11 C C26 XNZ . . . E 2 23.475 111.464 126.992 1 21.47 ? C26 XNZ 579 B 1 HETATM 12 C C25 XNZ . . . E 2 24.688 111.061 127.509 1 19.13 ? C25 XNZ 579 B 1 HETATM 13 C C20 XNZ . . . E 2 27.134 109.654 125.287 1 29.17 ? C20 XNZ 579 B 1 HETATM 14 C C21 XNZ . . . E 2 27.072 108.839 124.163 1 24.03 ? C21 XNZ 579 B 1 HETATM 15 C C16 XNZ . . . E 2 27.163 107.463 124.316 1 27.89 ? C16 XNZ 579 B 1 HETATM 16 C C8 XNZ . . . E 2 27.138 106.473 123.152 1 27.41 ? C8 XNZ 579 B 1 HETATM 17 N N7 XNZ . . . E 2 28.478 105.823 123.143 1 27.3 ? N7 XNZ 579 B 1 HETATM 18 C C30 XNZ . . . E 2 28.654 104.581 122.489 1 26.75 ? C30 XNZ 579 B 1 HETATM 19 O O32 XNZ . . . E 2 27.635 103.999 122.167 1 32.76 ? O32 XNZ 579 B 1 HETATM 20 C C31 XNZ . . . E 2 29.965 103.883 122.157 1 22.8 ? C31 XNZ 579 B 1 HETATM 21 C C4 XNZ . . . E 2 29.649 106.646 123.246 1 21.94 ? C4 XNZ 579 B 1 HETATM 22 C C3 XNZ . . . E 2 30.554 106.407 124.275 1 19.34 ? C3 XNZ 579 B 1 HETATM 23 C C2 XNZ . . . E 2 31.69 107.169 124.462 1 19.67 ? C2 XNZ 579 B 1 HETATM 24 C C9 XNZ . . . E 2 26.779 107.191 121.843 1 22.35 ? C9 XNZ 579 B 1 HETATM 25 C C12 XNZ . . . E 2 25.341 107.145 121.445 1 22.32 ? C12 XNZ 579 B 1 HETATM 26 O O36 XNZ . . . E 2 24.526 106.722 122.242 1 14.51 ? O36 XNZ 579 B 1 HETATM 27 C C13 XNZ . . . E 2 24.912 107.67 120.083 1 21.57 ? C13 XNZ 579 B 1 HETATM 28 C C14 XNZ . . . E 2 25.696 108.926 119.672 1 19.55 ? C14 XNZ 579 B 1 HETATM 29 C C34 XNZ . . . E 2 25.357 109.257 118.205 1 19.64 ? C34 XNZ 579 B 1 HETATM 30 C C35 XNZ . . . E 2 25.352 110.128 120.569 1 27.32 ? C35 XNZ 579 B 1 HETATM 31 C C15 XNZ . . . E 2 27.191 108.661 119.836 1 16.01 ? C15 XNZ 579 B 1 HETATM 32 C C10 XNZ . . . E 2 27.64 107.919 121.107 1 16.49 ? C10 XNZ 579 B 1 HETATM 33 N N11 XNZ . . . E 2 28.978 108.074 121.395 1 15.34 ? N11 XNZ 579 B 1 HETATM 34 C C5 XNZ . . . E 2 29.886 107.723 122.408 1 18.37 ? C5 XNZ 579 B 1 HETATM 35 C C6 XNZ . . . E 2 31.042 108.507 122.598 1 21.26 ? C6 XNZ 579 B 1 HETATM 36 O O33 XNZ . . . E 2 31.353 109.563 121.807 1 20.1 ? O33 XNZ 579 B 1 HETATM 37 C C1 XNZ . . . E 2 31.935 108.228 123.614 1 22.5 ? C1 XNZ 579 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #