data_3GNV
#
_model_server_result.job_id            CZ9hTNK7R1E9KBeIvvLQyA 
_model_server_result.datetime_utc      '2024-11-09 02:41:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":580}' 
#
_entry.id    3GNV 
#
_exptl.entry_id    3GNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GNV 
_cell.length_a            106.291 
_cell.length_b            107.965 
_cell.length_c            133.799 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GNV 
_atom_sites.fract_transf_matrix[1][1]    0.009408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XNZ A 1 579 1 XNZ INX . 
D 3 GOL A 1 580 2 GOL GOL . 
E 2 XNZ B 1 579 2 XNZ INX . 
F 3 GOL B 1 580 1 GOL GOL . 
G 4 HOH A 1 581 1 HOH HOH . 
G 4 HOH A 2 582 3 HOH HOH . 
G 4 HOH A 3 583 5 HOH HOH . 
G 4 HOH A 4 584 6 HOH HOH . 
G 4 HOH A 5 585 7 HOH HOH . 
G 4 HOH A 6 586 8 HOH HOH . 
G 4 HOH A 7 587 9 HOH HOH . 
G 4 HOH A 8 588 10 HOH HOH . 
G 4 HOH A 9 589 13 HOH HOH . 
G 4 HOH A 10 590 14 HOH HOH . 
G 4 HOH A 11 591 15 HOH HOH . 
G 4 HOH A 12 592 18 HOH HOH . 
G 4 HOH A 13 593 19 HOH HOH . 
G 4 HOH A 14 594 20 HOH HOH . 
G 4 HOH A 15 595 22 HOH HOH . 
G 4 HOH A 16 596 23 HOH HOH . 
G 4 HOH A 17 597 24 HOH HOH . 
G 4 HOH A 18 598 25 HOH HOH . 
G 4 HOH A 19 599 28 HOH HOH . 
G 4 HOH A 20 600 29 HOH HOH . 
G 4 HOH A 21 601 30 HOH HOH . 
G 4 HOH A 22 602 31 HOH HOH . 
G 4 HOH A 23 603 33 HOH HOH . 
G 4 HOH A 24 604 34 HOH HOH . 
G 4 HOH A 25 605 35 HOH HOH . 
G 4 HOH A 26 606 36 HOH HOH . 
G 4 HOH A 27 607 38 HOH HOH . 
G 4 HOH A 28 608 39 HOH HOH . 
G 4 HOH A 29 609 40 HOH HOH . 
G 4 HOH A 30 610 41 HOH HOH . 
G 4 HOH A 31 611 42 HOH HOH . 
G 4 HOH A 32 612 43 HOH HOH . 
G 4 HOH A 33 613 46 HOH HOH . 
G 4 HOH A 34 614 47 HOH HOH . 
G 4 HOH A 35 615 50 HOH HOH . 
G 4 HOH A 36 616 51 HOH HOH . 
G 4 HOH A 37 617 53 HOH HOH . 
G 4 HOH A 38 618 57 HOH HOH . 
G 4 HOH A 39 619 59 HOH HOH . 
G 4 HOH A 40 620 61 HOH HOH . 
G 4 HOH A 41 621 67 HOH HOH . 
G 4 HOH A 42 622 68 HOH HOH . 
G 4 HOH A 43 623 69 HOH HOH . 
G 4 HOH A 44 624 70 HOH HOH . 
G 4 HOH A 45 625 73 HOH HOH . 
G 4 HOH A 46 626 75 HOH HOH . 
G 4 HOH A 47 627 79 HOH HOH . 
G 4 HOH A 48 628 80 HOH HOH . 
G 4 HOH A 49 629 82 HOH HOH . 
G 4 HOH A 50 630 83 HOH HOH . 
G 4 HOH A 51 631 85 HOH HOH . 
G 4 HOH A 52 632 86 HOH HOH . 
G 4 HOH A 53 633 87 HOH HOH . 
G 4 HOH A 54 634 88 HOH HOH . 
G 4 HOH A 55 635 91 HOH HOH . 
G 4 HOH A 56 636 92 HOH HOH . 
G 4 HOH A 57 637 93 HOH HOH . 
G 4 HOH A 58 638 94 HOH HOH . 
G 4 HOH A 59 639 99 HOH HOH . 
G 4 HOH A 60 640 101 HOH HOH . 
G 4 HOH A 61 641 103 HOH HOH . 
G 4 HOH A 62 642 105 HOH HOH . 
G 4 HOH A 63 643 106 HOH HOH . 
G 4 HOH A 64 644 107 HOH HOH . 
G 4 HOH A 65 645 108 HOH HOH . 
G 4 HOH A 66 646 112 HOH HOH . 
G 4 HOH A 67 647 114 HOH HOH . 
G 4 HOH A 68 648 115 HOH HOH . 
G 4 HOH A 69 649 116 HOH HOH . 
G 4 HOH A 70 650 117 HOH HOH . 
G 4 HOH A 71 651 118 HOH HOH . 
G 4 HOH A 72 652 121 HOH HOH . 
G 4 HOH A 73 653 123 HOH HOH . 
G 4 HOH A 74 654 125 HOH HOH . 
G 4 HOH A 75 655 127 HOH HOH . 
G 4 HOH A 76 656 128 HOH HOH . 
G 4 HOH A 77 657 131 HOH HOH . 
G 4 HOH A 78 658 132 HOH HOH . 
G 4 HOH A 79 659 133 HOH HOH . 
G 4 HOH A 80 660 134 HOH HOH . 
G 4 HOH A 81 661 135 HOH HOH . 
G 4 HOH A 82 662 136 HOH HOH . 
G 4 HOH A 83 663 141 HOH HOH . 
G 4 HOH A 84 664 142 HOH HOH . 
G 4 HOH A 85 665 144 HOH HOH . 
G 4 HOH A 86 666 145 HOH HOH . 
G 4 HOH A 87 667 146 HOH HOH . 
G 4 HOH A 88 668 148 HOH HOH . 
G 4 HOH A 89 669 149 HOH HOH . 
G 4 HOH A 90 670 150 HOH HOH . 
G 4 HOH A 91 671 151 HOH HOH . 
G 4 HOH A 92 672 152 HOH HOH . 
G 4 HOH A 93 673 154 HOH HOH . 
G 4 HOH A 94 674 156 HOH HOH . 
G 4 HOH A 95 675 158 HOH HOH . 
G 4 HOH A 96 676 159 HOH HOH . 
G 4 HOH A 97 677 160 HOH HOH . 
G 4 HOH A 98 678 161 HOH HOH . 
G 4 HOH A 99 679 162 HOH HOH . 
G 4 HOH A 100 680 163 HOH HOH . 
G 4 HOH A 101 681 166 HOH HOH . 
G 4 HOH A 102 682 167 HOH HOH . 
G 4 HOH A 103 683 170 HOH HOH . 
G 4 HOH A 104 684 172 HOH HOH . 
G 4 HOH A 105 685 174 HOH HOH . 
G 4 HOH A 106 686 175 HOH HOH . 
G 4 HOH A 107 687 176 HOH HOH . 
G 4 HOH A 108 688 178 HOH HOH . 
G 4 HOH A 109 689 179 HOH HOH . 
G 4 HOH A 110 690 180 HOH HOH . 
G 4 HOH A 111 691 181 HOH HOH . 
H 4 HOH B 1 581 2 HOH HOH . 
H 4 HOH B 2 582 4 HOH HOH . 
H 4 HOH B 3 583 11 HOH HOH . 
H 4 HOH B 4 584 12 HOH HOH . 
H 4 HOH B 5 585 16 HOH HOH . 
H 4 HOH B 6 586 17 HOH HOH . 
H 4 HOH B 7 587 21 HOH HOH . 
H 4 HOH B 8 588 26 HOH HOH . 
H 4 HOH B 9 589 27 HOH HOH . 
H 4 HOH B 10 590 32 HOH HOH . 
H 4 HOH B 11 591 37 HOH HOH . 
H 4 HOH B 12 592 44 HOH HOH . 
H 4 HOH B 13 593 45 HOH HOH . 
H 4 HOH B 14 594 48 HOH HOH . 
H 4 HOH B 15 595 49 HOH HOH . 
H 4 HOH B 16 596 52 HOH HOH . 
H 4 HOH B 17 597 54 HOH HOH . 
H 4 HOH B 18 598 55 HOH HOH . 
H 4 HOH B 19 599 56 HOH HOH . 
H 4 HOH B 20 600 58 HOH HOH . 
H 4 HOH B 21 601 60 HOH HOH . 
H 4 HOH B 22 602 62 HOH HOH . 
H 4 HOH B 23 603 64 HOH HOH . 
H 4 HOH B 24 604 65 HOH HOH . 
H 4 HOH B 25 605 66 HOH HOH . 
H 4 HOH B 26 606 74 HOH HOH . 
H 4 HOH B 27 607 76 HOH HOH . 
H 4 HOH B 28 608 77 HOH HOH . 
H 4 HOH B 29 609 78 HOH HOH . 
H 4 HOH B 30 610 81 HOH HOH . 
H 4 HOH B 31 611 84 HOH HOH . 
H 4 HOH B 32 612 89 HOH HOH . 
H 4 HOH B 33 613 90 HOH HOH . 
H 4 HOH B 34 614 95 HOH HOH . 
H 4 HOH B 35 615 96 HOH HOH . 
H 4 HOH B 36 616 97 HOH HOH . 
H 4 HOH B 37 617 98 HOH HOH . 
H 4 HOH B 38 618 100 HOH HOH . 
H 4 HOH B 39 619 102 HOH HOH . 
H 4 HOH B 40 620 104 HOH HOH . 
H 4 HOH B 41 621 109 HOH HOH . 
H 4 HOH B 42 622 110 HOH HOH . 
H 4 HOH B 43 623 111 HOH HOH . 
H 4 HOH B 44 624 113 HOH HOH . 
H 4 HOH B 45 625 119 HOH HOH . 
H 4 HOH B 46 626 120 HOH HOH . 
H 4 HOH B 47 627 122 HOH HOH . 
H 4 HOH B 48 628 124 HOH HOH . 
H 4 HOH B 49 629 126 HOH HOH . 
H 4 HOH B 50 630 129 HOH HOH . 
H 4 HOH B 51 631 130 HOH HOH . 
H 4 HOH B 52 632 137 HOH HOH . 
H 4 HOH B 53 633 138 HOH HOH . 
H 4 HOH B 54 634 139 HOH HOH . 
H 4 HOH B 55 635 140 HOH HOH . 
H 4 HOH B 56 636 143 HOH HOH . 
H 4 HOH B 57 637 147 HOH HOH . 
H 4 HOH B 58 638 153 HOH HOH . 
H 4 HOH B 59 639 157 HOH HOH . 
H 4 HOH B 60 640 164 HOH HOH . 
H 4 HOH B 61 641 165 HOH HOH . 
H 4 HOH B 62 642 168 HOH HOH . 
H 4 HOH B 63 643 171 HOH HOH . 
H 4 HOH B 64 644 173 HOH HOH . 
H 4 HOH B 65 645 177 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 37.605 46.285 113.217 1 20.41 ? C1 GOL 580 A 1 
HETATM 2 O O1 GOL . . . D 3 38.756 46.002 112.448 1 29.68 ? O1 GOL 580 A 1 
HETATM 3 C C2 GOL . . . D 3 36.571 45.172 113.03 1 22.09 ? C2 GOL 580 A 1 
HETATM 4 O O2 GOL . . . D 3 35.381 45.695 112.479 1 14.73 ? O2 GOL 580 A 1 
HETATM 5 C C3 GOL . . . D 3 36.257 44.449 114.344 1 22.06 ? C3 GOL 580 A 1 
HETATM 6 O O3 GOL . . . D 3 36.699 43.111 114.331 1 22.95 ? O3 GOL 580 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#