data_3GOL # _model_server_result.job_id ugXGGokS0kyd-iL-VCNKhA _model_server_result.datetime_utc '2024-11-26 17:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":579}' # _entry.id 3GOL # _exptl.entry_id 3GOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (11R)-10-acetyl-11-(2,4-dichlorophenyl)-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GOL _cell.length_a 106.048 _cell.length_b 106.62 _cell.length_c 134.679 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 223 A ASP 220 1_555 D MG MG . A MG 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A O THR 224 A THR 221 1_555 D MG MG . A MG 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 D MG MG . A MG 580 1_555 G O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 D MG MG . A MG 580 1_555 G O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 B O THR 224 B THR 221 1_555 F MG MG . B MG 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 F MG MG . B MG 580 1_555 H O HOH . B HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? # _chem_comp.formula 'C23 H22 Cl2 N2 O3' _chem_comp.formula_weight 445.338 _chem_comp.id XND _chem_comp.mon_nstd_flag . _chem_comp.name (11R)-10-acetyl-11-(2,4-dichlorophenyl)-6-hydroxy-3,3-dimethyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL29 C22 XND sing 376 n n C22 C21 XND doub 377 n y C22 C23 XND sing 378 n y C21 C20 XND sing 379 n y C20 CL28 XND sing 380 n n C20 C16 XND doub 381 n y C23 C24 XND doub 382 n y C24 C16 XND sing 383 n y C16 C11 XND sing 384 n n C11 C5 XND sing 385 n n C11 N10 XND sing 386 n n C5 C6 XND sing 387 n n C5 C4 XND doub 388 n n C6 O25 XND doub 389 n n C6 C1 XND sing 390 n n C1 C2 XND sing 391 n n N10 C17 XND sing 392 n n N10 C9 XND sing 393 n n C17 C19 XND sing 394 n n C17 O18 XND doub 395 n n C9 C15 XND doub 396 n y C9 C8 XND sing 397 n y C15 C14 XND sing 398 n y C14 C13 XND doub 399 n y C13 C12 XND sing 400 n y C12 O30 XND sing 401 n n C12 C8 XND doub 402 n y C8 N7 XND sing 403 n n N7 C4 XND sing 404 n n C4 C3 XND sing 405 n n C3 C2 XND sing 406 n n C2 C27 XND sing 407 n n C2 C26 XND sing 408 n n C21 H21 XND sing 409 n n C23 H23 XND sing 410 n n C24 H24 XND sing 411 n n C11 H11 XND sing 412 n n C1 H1 XND sing 413 n n C1 H1A XND sing 414 n n C19 H19 XND sing 415 n n C19 H19A XND sing 416 n n C19 H19B XND sing 417 n n C15 H15 XND sing 418 n n C14 H14 XND sing 419 n n C13 H13 XND sing 420 n n O30 HO30 XND sing 421 n n N7 HN7 XND sing 422 n n C3 H3 XND sing 423 n n C3 H3A XND sing 424 n n C27 H27 XND sing 425 n n C27 H27A XND sing 426 n n C27 H27B XND sing 427 n n C26 H26 XND sing 428 n n C26 H26A XND sing 429 n n C26 H26B XND sing 430 n n # _atom_sites.entry_id 3GOL _atom_sites.fract_transf_matrix[1][1] 0.00943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XND A 1 579 1 XND INX . D 3 MG A 1 580 1 MG MG . E 2 XND B 1 579 2 XND INX . F 3 MG B 1 580 2 MG MG . G 4 HOH A 1 581 1 HOH HOH . G 4 HOH A 2 582 2 HOH HOH . G 4 HOH A 3 583 3 HOH HOH . G 4 HOH A 4 584 4 HOH HOH . G 4 HOH A 5 585 7 HOH HOH . G 4 HOH A 6 586 9 HOH HOH . G 4 HOH A 7 587 10 HOH HOH . G 4 HOH A 8 588 12 HOH HOH . G 4 HOH A 9 589 13 HOH HOH . G 4 HOH A 10 590 14 HOH HOH . G 4 HOH A 11 591 16 HOH HOH . G 4 HOH A 12 592 17 HOH HOH . G 4 HOH A 13 593 18 HOH HOH . G 4 HOH A 14 594 19 HOH HOH . G 4 HOH A 15 595 23 HOH HOH . G 4 HOH A 16 596 24 HOH HOH . G 4 HOH A 17 597 27 HOH HOH . G 4 HOH A 18 598 29 HOH HOH . G 4 HOH A 19 599 31 HOH HOH . G 4 HOH A 20 600 34 HOH HOH . G 4 HOH A 21 601 35 HOH HOH . G 4 HOH A 22 602 36 HOH HOH . G 4 HOH A 23 603 37 HOH HOH . G 4 HOH A 24 604 38 HOH HOH . G 4 HOH A 25 605 40 HOH HOH . G 4 HOH A 26 606 41 HOH HOH . G 4 HOH A 27 607 43 HOH HOH . G 4 HOH A 28 608 44 HOH HOH . G 4 HOH A 29 609 45 HOH HOH . G 4 HOH A 30 610 46 HOH HOH . G 4 HOH A 31 611 48 HOH HOH . G 4 HOH A 32 612 50 HOH HOH . G 4 HOH A 33 613 51 HOH HOH . G 4 HOH A 34 614 54 HOH HOH . G 4 HOH A 35 615 55 HOH HOH . G 4 HOH A 36 616 56 HOH HOH . G 4 HOH A 37 617 59 HOH HOH . G 4 HOH A 38 618 60 HOH HOH . G 4 HOH A 39 619 64 HOH HOH . G 4 HOH A 40 620 67 HOH HOH . G 4 HOH A 41 621 69 HOH HOH . G 4 HOH A 42 622 70 HOH HOH . G 4 HOH A 43 623 71 HOH HOH . G 4 HOH A 44 624 73 HOH HOH . G 4 HOH A 45 625 74 HOH HOH . G 4 HOH A 46 626 76 HOH HOH . G 4 HOH A 47 627 77 HOH HOH . G 4 HOH A 48 628 78 HOH HOH . G 4 HOH A 49 629 83 HOH HOH . G 4 HOH A 50 630 84 HOH HOH . G 4 HOH A 51 631 85 HOH HOH . G 4 HOH A 52 632 86 HOH HOH . G 4 HOH A 53 633 87 HOH HOH . G 4 HOH A 54 634 88 HOH HOH . G 4 HOH A 55 635 90 HOH HOH . G 4 HOH A 56 636 93 HOH HOH . G 4 HOH A 57 637 94 HOH HOH . G 4 HOH A 58 638 95 HOH HOH . G 4 HOH A 59 639 96 HOH HOH . G 4 HOH A 60 640 97 HOH HOH . G 4 HOH A 61 641 98 HOH HOH . G 4 HOH A 62 642 99 HOH HOH . G 4 HOH A 63 643 100 HOH HOH . G 4 HOH A 64 644 101 HOH HOH . G 4 HOH A 65 645 102 HOH HOH . G 4 HOH A 66 646 103 HOH HOH . G 4 HOH A 67 647 104 HOH HOH . G 4 HOH A 68 648 105 HOH HOH . G 4 HOH A 69 649 106 HOH HOH . G 4 HOH A 70 650 110 HOH HOH . G 4 HOH A 71 651 111 HOH HOH . G 4 HOH A 72 652 112 HOH HOH . H 4 HOH B 1 581 5 HOH HOH . H 4 HOH B 2 582 6 HOH HOH . H 4 HOH B 3 583 8 HOH HOH . H 4 HOH B 4 584 11 HOH HOH . H 4 HOH B 5 585 15 HOH HOH . H 4 HOH B 6 586 20 HOH HOH . H 4 HOH B 7 587 21 HOH HOH . H 4 HOH B 8 588 22 HOH HOH . H 4 HOH B 9 589 25 HOH HOH . H 4 HOH B 10 590 26 HOH HOH . H 4 HOH B 11 591 28 HOH HOH . H 4 HOH B 12 592 30 HOH HOH . H 4 HOH B 13 593 32 HOH HOH . H 4 HOH B 14 594 33 HOH HOH . H 4 HOH B 15 595 39 HOH HOH . H 4 HOH B 16 596 42 HOH HOH . H 4 HOH B 17 597 47 HOH HOH . H 4 HOH B 18 598 49 HOH HOH . H 4 HOH B 19 599 52 HOH HOH . H 4 HOH B 20 600 53 HOH HOH . H 4 HOH B 21 601 57 HOH HOH . H 4 HOH B 22 602 58 HOH HOH . H 4 HOH B 23 603 61 HOH HOH . H 4 HOH B 24 604 62 HOH HOH . H 4 HOH B 25 605 63 HOH HOH . H 4 HOH B 26 606 65 HOH HOH . H 4 HOH B 27 607 66 HOH HOH . H 4 HOH B 28 608 68 HOH HOH . H 4 HOH B 29 609 72 HOH HOH . H 4 HOH B 30 610 75 HOH HOH . H 4 HOH B 31 611 79 HOH HOH . H 4 HOH B 32 612 80 HOH HOH . H 4 HOH B 33 613 81 HOH HOH . H 4 HOH B 34 614 82 HOH HOH . H 4 HOH B 35 615 89 HOH HOH . H 4 HOH B 36 616 91 HOH HOH . H 4 HOH B 37 617 92 HOH HOH . H 4 HOH B 38 618 107 HOH HOH . H 4 HOH B 39 619 108 HOH HOH . H 4 HOH B 40 620 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL29 XND . . . E 2 28.757 50.227 60.254 1 53.45 ? CL29 XND 579 B 1 HETATM 2 C C22 XND . . . E 2 28.863 51.315 58.935 1 49.27 ? C22 XND 579 B 1 HETATM 3 C C21 XND . . . E 2 28.756 52.652 59.218 1 49.44 ? C21 XND 579 B 1 HETATM 4 C C20 XND . . . E 2 28.832 53.557 58.189 1 52.82 ? C20 XND 579 B 1 HETATM 5 CL CL28 XND . . . E 2 28.691 55.198 58.626 1 56.15 ? CL28 XND 579 B 1 HETATM 6 C C23 XND . . . E 2 29.042 50.883 57.63 1 49.13 ? C23 XND 579 B 1 HETATM 7 C C24 XND . . . E 2 29.113 51.8 56.586 1 50.69 ? C24 XND 579 B 1 HETATM 8 C C16 XND . . . E 2 29.015 53.167 56.855 1 50.55 ? C16 XND 579 B 1 HETATM 9 C C11 XND . . . E 2 29.059 54.27 55.761 1 47.58 ? C11 XND 579 B 1 HETATM 10 C C5 XND . . . E 2 29.341 53.696 54.374 1 41.06 ? C5 XND 579 B 1 HETATM 11 C C6 XND . . . E 2 30.737 53.846 53.854 1 40.92 ? C6 XND 579 B 1 HETATM 12 O O25 XND . . . E 2 31.623 54.286 54.561 1 41.35 ? O25 XND 579 B 1 HETATM 13 C C1 XND . . . E 2 31.059 53.378 52.454 1 34.8 ? C1 XND 579 B 1 HETATM 14 N N10 XND . . . E 2 27.794 55.034 55.762 1 41.29 ? N10 XND 579 B 1 HETATM 15 C C17 XND . . . E 2 27.761 56.257 55.072 1 51.5 ? C17 XND 579 B 1 HETATM 16 C C19 XND . . . E 2 26.46 56.901 54.63 1 51.59 ? C19 XND 579 B 1 HETATM 17 O O18 XND . . . E 2 28.814 56.821 54.807 1 49.31 ? O18 XND 579 B 1 HETATM 18 C C9 XND . . . E 2 26.624 54.258 55.961 1 36.65 ? C9 XND 579 B 1 HETATM 19 C C15 XND . . . E 2 25.829 54.527 57.072 1 32.25 ? C15 XND 579 B 1 HETATM 20 C C14 XND . . . E 2 24.697 53.772 57.317 1 38.98 ? C14 XND 579 B 1 HETATM 21 C C13 XND . . . E 2 24.347 52.734 56.454 1 34.57 ? C13 XND 579 B 1 HETATM 22 C C12 XND . . . E 2 25.14 52.46 55.359 1 29.58 ? C12 XND 579 B 1 HETATM 23 O O30 XND . . . E 2 24.758 51.452 54.557 1 28.79 ? O30 XND 579 B 1 HETATM 24 C C8 XND . . . E 2 26.287 53.21 55.089 1 33.95 ? C8 XND 579 B 1 HETATM 25 N N7 XND . . . E 2 27.084 52.815 53.984 1 30.16 ? N7 XND 579 B 1 HETATM 26 C C4 XND . . . E 2 28.423 52.978 53.666 1 33.29 ? C4 XND 579 B 1 HETATM 27 C C3 XND . . . E 2 28.842 52.25 52.387 1 31.67 ? C3 XND 579 B 1 HETATM 28 C C2 XND . . . E 2 30.352 52.053 52.187 1 28.93 ? C2 XND 579 B 1 HETATM 29 C C27 XND . . . E 2 30.809 50.985 53.201 1 32.4 ? C27 XND 579 B 1 HETATM 30 C C26 XND . . . E 2 30.686 51.61 50.756 1 25.8 ? C26 XND 579 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #