data_3GOV # _model_server_result.job_id p-0j2J7J65QAFRU48aBkfg _model_server_result.datetime_utc '2024-12-26 23:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3GOV # _exptl.entry_id 3GOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GOV _cell.length_a 68.418 _cell.length_b 70.412 _cell.length_c 121.413 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 301 1_555 A SG CYS 56 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 36 A CYS 329 1_555 A SG CYS 69 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 74 A CYS 367 1_555 A SG CYS 121 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 104 A CYS 397 1_555 A SG CYS 139 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 A SG CYS 143 A CYS 436 1_555 B SG CYS 124 B CYS 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 27 B CYS 475 1_555 B SG CYS 43 B CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 166 B CYS 614 1_555 B SG CYS 183 B CYS 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 194 B CYS 642 1_555 B SG CYS 224 B CYS 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3GOV _atom_sites.fract_transf_matrix[1][1] 0.014616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL B 1 2 2 GOL GOL . E 4 HOH A 1 4 4 HOH HOH . E 4 HOH A 2 7 7 HOH HOH . E 4 HOH A 3 8 8 HOH HOH . E 4 HOH A 4 10 10 HOH HOH . E 4 HOH A 5 11 11 HOH HOH . E 4 HOH A 6 15 15 HOH HOH . E 4 HOH A 7 16 16 HOH HOH . E 4 HOH A 8 17 17 HOH HOH . E 4 HOH A 9 23 23 HOH HOH . E 4 HOH A 10 24 24 HOH HOH . E 4 HOH A 11 25 25 HOH HOH . E 4 HOH A 12 30 30 HOH HOH . E 4 HOH A 13 31 31 HOH HOH . E 4 HOH A 14 37 37 HOH HOH . E 4 HOH A 15 39 39 HOH HOH . E 4 HOH A 16 40 40 HOH HOH . E 4 HOH A 17 41 41 HOH HOH . E 4 HOH A 18 48 48 HOH HOH . E 4 HOH A 19 51 51 HOH HOH . E 4 HOH A 20 53 53 HOH HOH . E 4 HOH A 21 56 56 HOH HOH . E 4 HOH A 22 61 61 HOH HOH . E 4 HOH A 23 62 62 HOH HOH . E 4 HOH A 24 63 63 HOH HOH . E 4 HOH A 25 65 65 HOH HOH . E 4 HOH A 26 77 77 HOH HOH . E 4 HOH A 27 78 78 HOH HOH . E 4 HOH A 28 82 82 HOH HOH . E 4 HOH A 29 84 84 HOH HOH . E 4 HOH A 30 85 85 HOH HOH . E 4 HOH A 31 86 86 HOH HOH . E 4 HOH A 32 87 87 HOH HOH . E 4 HOH A 33 89 89 HOH HOH . F 4 HOH B 1 1 1 HOH HOH . F 4 HOH B 2 3 3 HOH HOH . F 4 HOH B 3 5 5 HOH HOH . F 4 HOH B 4 6 6 HOH HOH . F 4 HOH B 5 9 9 HOH HOH . F 4 HOH B 6 12 12 HOH HOH . F 4 HOH B 7 13 13 HOH HOH . F 4 HOH B 8 14 14 HOH HOH . F 4 HOH B 9 18 18 HOH HOH . F 4 HOH B 10 19 19 HOH HOH . F 4 HOH B 11 20 20 HOH HOH . F 4 HOH B 12 21 21 HOH HOH . F 4 HOH B 13 22 22 HOH HOH . F 4 HOH B 14 26 26 HOH HOH . F 4 HOH B 15 27 27 HOH HOH . F 4 HOH B 16 28 28 HOH HOH . F 4 HOH B 17 29 29 HOH HOH . F 4 HOH B 18 32 32 HOH HOH . F 4 HOH B 19 33 33 HOH HOH . F 4 HOH B 20 34 34 HOH HOH . F 4 HOH B 21 35 35 HOH HOH . F 4 HOH B 22 36 36 HOH HOH . F 4 HOH B 23 38 38 HOH HOH . F 4 HOH B 24 42 42 HOH HOH . F 4 HOH B 25 43 43 HOH HOH . F 4 HOH B 26 44 44 HOH HOH . F 4 HOH B 27 45 45 HOH HOH . F 4 HOH B 28 46 46 HOH HOH . F 4 HOH B 29 47 47 HOH HOH . F 4 HOH B 30 49 49 HOH HOH . F 4 HOH B 31 50 50 HOH HOH . F 4 HOH B 32 52 52 HOH HOH . F 4 HOH B 33 54 54 HOH HOH . F 4 HOH B 34 55 55 HOH HOH . F 4 HOH B 35 57 57 HOH HOH . F 4 HOH B 36 58 58 HOH HOH . F 4 HOH B 37 59 59 HOH HOH . F 4 HOH B 38 60 60 HOH HOH . F 4 HOH B 39 64 64 HOH HOH . F 4 HOH B 40 66 66 HOH HOH . F 4 HOH B 41 67 67 HOH HOH . F 4 HOH B 42 68 68 HOH HOH . F 4 HOH B 43 69 69 HOH HOH . F 4 HOH B 44 70 70 HOH HOH . F 4 HOH B 45 71 71 HOH HOH . F 4 HOH B 46 72 72 HOH HOH . F 4 HOH B 47 73 73 HOH HOH . F 4 HOH B 48 74 74 HOH HOH . F 4 HOH B 49 75 75 HOH HOH . F 4 HOH B 50 76 76 HOH HOH . F 4 HOH B 51 79 79 HOH HOH . F 4 HOH B 52 80 80 HOH HOH . F 4 HOH B 53 81 81 HOH HOH . F 4 HOH B 54 83 83 HOH HOH . F 4 HOH B 55 88 88 HOH HOH . F 4 HOH B 56 90 90 HOH HOH . F 4 HOH B 57 700 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 9.026 57.364 21.499 1 45.73 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . C 3 8.788 56.698 20.278 1 45.58 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . C 3 10.512 57.369 21.86 1 45.43 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . C 3 11.253 57.916 20.795 1 45.35 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . C 3 10.719 58.225 23.106 1 45.3 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . C 3 11.412 57.595 24.175 1 45.43 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #