data_3GOV
#
_model_server_result.job_id            8_yvuDBod1W07VqLc-s97g 
_model_server_result.datetime_utc      '2024-11-08 13:43:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gov 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3GOV 
#
_exptl.entry_id    3GOV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GOV 
_cell.length_a            68.418 
_cell.length_b            70.412 
_cell.length_c            121.413 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GOV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 301 1_555 A SG CYS 56 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 36 A CYS 329 1_555 A SG CYS 69 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 74 A CYS 367 1_555 A SG CYS 121 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 A SG CYS 104 A CYS 397 1_555 A SG CYS 139 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 A SG CYS 143 A CYS 436 1_555 B SG CYS 124 B CYS 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 B SG CYS 27 B CYS 475 1_555 B SG CYS 43 B CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 B SG CYS 166 B CYS 614 1_555 B SG CYS 183 B CYS 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 B SG CYS 194 B CYS 642 1_555 B SG CYS 224 B CYS 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GOV 
_atom_sites.fract_transf_matrix[1][1]    0.014616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1 1 GOL GOL . 
D 3 GOL B 1 2 2 GOL GOL . 
E 4 HOH A 1 4 4 HOH HOH . 
E 4 HOH A 2 7 7 HOH HOH . 
E 4 HOH A 3 8 8 HOH HOH . 
E 4 HOH A 4 10 10 HOH HOH . 
E 4 HOH A 5 11 11 HOH HOH . 
E 4 HOH A 6 15 15 HOH HOH . 
E 4 HOH A 7 16 16 HOH HOH . 
E 4 HOH A 8 17 17 HOH HOH . 
E 4 HOH A 9 23 23 HOH HOH . 
E 4 HOH A 10 24 24 HOH HOH . 
E 4 HOH A 11 25 25 HOH HOH . 
E 4 HOH A 12 30 30 HOH HOH . 
E 4 HOH A 13 31 31 HOH HOH . 
E 4 HOH A 14 37 37 HOH HOH . 
E 4 HOH A 15 39 39 HOH HOH . 
E 4 HOH A 16 40 40 HOH HOH . 
E 4 HOH A 17 41 41 HOH HOH . 
E 4 HOH A 18 48 48 HOH HOH . 
E 4 HOH A 19 51 51 HOH HOH . 
E 4 HOH A 20 53 53 HOH HOH . 
E 4 HOH A 21 56 56 HOH HOH . 
E 4 HOH A 22 61 61 HOH HOH . 
E 4 HOH A 23 62 62 HOH HOH . 
E 4 HOH A 24 63 63 HOH HOH . 
E 4 HOH A 25 65 65 HOH HOH . 
E 4 HOH A 26 77 77 HOH HOH . 
E 4 HOH A 27 78 78 HOH HOH . 
E 4 HOH A 28 82 82 HOH HOH . 
E 4 HOH A 29 84 84 HOH HOH . 
E 4 HOH A 30 85 85 HOH HOH . 
E 4 HOH A 31 86 86 HOH HOH . 
E 4 HOH A 32 87 87 HOH HOH . 
E 4 HOH A 33 89 89 HOH HOH . 
F 4 HOH B 1 1 1 HOH HOH . 
F 4 HOH B 2 3 3 HOH HOH . 
F 4 HOH B 3 5 5 HOH HOH . 
F 4 HOH B 4 6 6 HOH HOH . 
F 4 HOH B 5 9 9 HOH HOH . 
F 4 HOH B 6 12 12 HOH HOH . 
F 4 HOH B 7 13 13 HOH HOH . 
F 4 HOH B 8 14 14 HOH HOH . 
F 4 HOH B 9 18 18 HOH HOH . 
F 4 HOH B 10 19 19 HOH HOH . 
F 4 HOH B 11 20 20 HOH HOH . 
F 4 HOH B 12 21 21 HOH HOH . 
F 4 HOH B 13 22 22 HOH HOH . 
F 4 HOH B 14 26 26 HOH HOH . 
F 4 HOH B 15 27 27 HOH HOH . 
F 4 HOH B 16 28 28 HOH HOH . 
F 4 HOH B 17 29 29 HOH HOH . 
F 4 HOH B 18 32 32 HOH HOH . 
F 4 HOH B 19 33 33 HOH HOH . 
F 4 HOH B 20 34 34 HOH HOH . 
F 4 HOH B 21 35 35 HOH HOH . 
F 4 HOH B 22 36 36 HOH HOH . 
F 4 HOH B 23 38 38 HOH HOH . 
F 4 HOH B 24 42 42 HOH HOH . 
F 4 HOH B 25 43 43 HOH HOH . 
F 4 HOH B 26 44 44 HOH HOH . 
F 4 HOH B 27 45 45 HOH HOH . 
F 4 HOH B 28 46 46 HOH HOH . 
F 4 HOH B 29 47 47 HOH HOH . 
F 4 HOH B 30 49 49 HOH HOH . 
F 4 HOH B 31 50 50 HOH HOH . 
F 4 HOH B 32 52 52 HOH HOH . 
F 4 HOH B 33 54 54 HOH HOH . 
F 4 HOH B 34 55 55 HOH HOH . 
F 4 HOH B 35 57 57 HOH HOH . 
F 4 HOH B 36 58 58 HOH HOH . 
F 4 HOH B 37 59 59 HOH HOH . 
F 4 HOH B 38 60 60 HOH HOH . 
F 4 HOH B 39 64 64 HOH HOH . 
F 4 HOH B 40 66 66 HOH HOH . 
F 4 HOH B 41 67 67 HOH HOH . 
F 4 HOH B 42 68 68 HOH HOH . 
F 4 HOH B 43 69 69 HOH HOH . 
F 4 HOH B 44 70 70 HOH HOH . 
F 4 HOH B 45 71 71 HOH HOH . 
F 4 HOH B 46 72 72 HOH HOH . 
F 4 HOH B 47 73 73 HOH HOH . 
F 4 HOH B 48 74 74 HOH HOH . 
F 4 HOH B 49 75 75 HOH HOH . 
F 4 HOH B 50 76 76 HOH HOH . 
F 4 HOH B 51 79 79 HOH HOH . 
F 4 HOH B 52 80 80 HOH HOH . 
F 4 HOH B 53 81 81 HOH HOH . 
F 4 HOH B 54 83 83 HOH HOH . 
F 4 HOH B 55 88 88 HOH HOH . 
F 4 HOH B 56 90 90 HOH HOH . 
F 4 HOH B 57 700 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 2.015 -16.326 22.176 1 60.34 ? C1 GOL 2 B 1 
HETATM 2 O O1 GOL . . . D 3 3.376 -16.606 21.901 1 60.06 ? O1 GOL 2 B 1 
HETATM 3 C C2 GOL . . . D 3 1.159 -17.594 22.255 1 60.26 ? C2 GOL 2 B 1 
HETATM 4 O O2 GOL . . . D 3 1.258 -18.351 21.073 1 59.71 ? O2 GOL 2 B 1 
HETATM 5 C C3 GOL . . . D 3 1.575 -18.465 23.438 1 60.32 ? C3 GOL 2 B 1 
HETATM 6 O O3 GOL . . . D 3 1.326 -17.81 24.665 1 60.5 ? O3 GOL 2 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#