data_3GP1 # _model_server_result.job_id 4lFil2lT4XjW2Hlaxq-miw _model_server_result.datetime_utc '2025-03-06 06:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 3GP1 # _exptl.entry_id 3GP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GP1 _cell.length_a 45.613 _cell.length_b 92.845 _cell.length_c 105.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DC 7 C DC 7 1_555 C P 8OG 8 C 8OG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale2 C O3' 8OG 8 C 8OG 8 1_555 C P DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? metalc ? metalc1 A SG CYS 248 A CYS 249 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 251 A CYS 252 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A SG CYS 268 A CYS 269 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A SG CYS 271 A CYS 272 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 B DG 3 1_555 C N3 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 B DG 3 1_555 C O2 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 B DG 3 1_555 C N4 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 4 B DT 4 1_555 C N1 DA 14 C DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 4 B DT 4 1_555 C N6 DA 14 C DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 5 B DA 5 1_555 C N3 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 5 B DA 5 1_555 C O4 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DG 6 B DG 6 1_555 C N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N2 DG 6 B DG 6 1_555 C O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O6 DG 6 B DG 6 1_555 C N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DA 7 B DA 7 1_555 C N3 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 DA 7 B DA 7 1_555 C O4 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 8 B DT 8 1_555 C N1 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 8 B DT 8 1_555 C N6 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 9 B DC 9 1_555 C N1 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 9 B DC 9 1_555 C O6 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 9 B DC 9 1_555 C N2 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 10 B DC 10 1_555 C N1 8OG 8 C 8OG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 10 B DC 10 1_555 C O6 8OG 8 C 8OG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 10 B DC 10 1_555 C N2 8OG 8 C 8OG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DG 11 B DG 11 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 DG 11 B DG 11 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 11 B DG 11 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 12 B DG 12 1_555 C N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 12 B DG 12 1_555 C O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 12 B DG 12 1_555 C N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N1 DA 13 B DA 13 1_555 C N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N6 DA 13 B DA 13 1_555 C O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog29 B O2 DC 14 B DC 14 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GP1 _atom_sites.fract_transf_matrix[1][1] 0.021924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 300 300 ZN ZN . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 275 2 HOH HOH . E 5 HOH A 3 276 3 HOH HOH . E 5 HOH A 4 277 4 HOH HOH . E 5 HOH A 5 278 5 HOH HOH . E 5 HOH A 6 279 6 HOH HOH . E 5 HOH A 7 280 7 HOH HOH . E 5 HOH A 8 281 8 HOH HOH . E 5 HOH A 9 282 9 HOH HOH . E 5 HOH A 10 283 10 HOH HOH . E 5 HOH A 11 284 11 HOH HOH . E 5 HOH A 12 285 12 HOH HOH . E 5 HOH A 13 286 13 HOH HOH . E 5 HOH A 14 287 14 HOH HOH . E 5 HOH A 15 288 15 HOH HOH . E 5 HOH A 16 289 16 HOH HOH . E 5 HOH A 17 290 17 HOH HOH . E 5 HOH A 18 291 18 HOH HOH . E 5 HOH A 19 292 19 HOH HOH . E 5 HOH A 20 293 20 HOH HOH . E 5 HOH A 21 294 21 HOH HOH . E 5 HOH A 22 295 22 HOH HOH . E 5 HOH A 23 296 23 HOH HOH . E 5 HOH A 24 297 24 HOH HOH . E 5 HOH A 25 298 25 HOH HOH . E 5 HOH A 26 299 26 HOH HOH . E 5 HOH A 27 301 27 HOH HOH . E 5 HOH A 28 302 28 HOH HOH . E 5 HOH A 29 303 29 HOH HOH . E 5 HOH A 30 304 30 HOH HOH . E 5 HOH A 31 305 31 HOH HOH . E 5 HOH A 32 306 32 HOH HOH . E 5 HOH A 33 307 33 HOH HOH . E 5 HOH A 34 308 34 HOH HOH . E 5 HOH A 35 309 35 HOH HOH . E 5 HOH A 36 310 36 HOH HOH . E 5 HOH A 37 311 37 HOH HOH . E 5 HOH A 38 312 38 HOH HOH . E 5 HOH A 39 313 39 HOH HOH . E 5 HOH A 40 314 40 HOH HOH . E 5 HOH A 41 315 41 HOH HOH . E 5 HOH A 42 316 42 HOH HOH . E 5 HOH A 43 317 43 HOH HOH . E 5 HOH A 44 318 44 HOH HOH . E 5 HOH A 45 319 45 HOH HOH . E 5 HOH A 46 320 46 HOH HOH . E 5 HOH A 47 321 47 HOH HOH . E 5 HOH A 48 322 48 HOH HOH . E 5 HOH A 49 323 49 HOH HOH . E 5 HOH A 50 324 50 HOH HOH . E 5 HOH A 51 325 51 HOH HOH . E 5 HOH A 52 326 52 HOH HOH . E 5 HOH A 53 327 53 HOH HOH . E 5 HOH A 54 328 54 HOH HOH . E 5 HOH A 55 329 55 HOH HOH . E 5 HOH A 56 330 56 HOH HOH . E 5 HOH A 57 331 57 HOH HOH . E 5 HOH A 58 332 58 HOH HOH . E 5 HOH A 59 333 59 HOH HOH . E 5 HOH A 60 334 60 HOH HOH . E 5 HOH A 61 335 61 HOH HOH . E 5 HOH A 62 336 62 HOH HOH . E 5 HOH A 63 337 63 HOH HOH . E 5 HOH A 64 338 64 HOH HOH . E 5 HOH A 65 339 65 HOH HOH . E 5 HOH A 66 340 66 HOH HOH . E 5 HOH A 67 341 67 HOH HOH . E 5 HOH A 68 342 68 HOH HOH . E 5 HOH A 69 343 69 HOH HOH . E 5 HOH A 70 344 70 HOH HOH . E 5 HOH A 71 345 71 HOH HOH . E 5 HOH A 72 346 72 HOH HOH . E 5 HOH A 73 347 73 HOH HOH . E 5 HOH A 74 348 74 HOH HOH . E 5 HOH A 75 349 75 HOH HOH . E 5 HOH A 76 350 76 HOH HOH . E 5 HOH A 77 351 77 HOH HOH . E 5 HOH A 78 352 78 HOH HOH . E 5 HOH A 79 353 79 HOH HOH . E 5 HOH A 80 354 80 HOH HOH . E 5 HOH A 81 355 81 HOH HOH . E 5 HOH A 82 356 82 HOH HOH . E 5 HOH A 83 357 83 HOH HOH . E 5 HOH A 84 358 84 HOH HOH . E 5 HOH A 85 359 85 HOH HOH . E 5 HOH A 86 360 86 HOH HOH . E 5 HOH A 87 361 87 HOH HOH . E 5 HOH A 88 362 88 HOH HOH . E 5 HOH A 89 363 89 HOH HOH . E 5 HOH A 90 364 90 HOH HOH . E 5 HOH A 91 365 91 HOH HOH . E 5 HOH A 92 366 92 HOH HOH . E 5 HOH A 93 367 93 HOH HOH . E 5 HOH A 94 368 94 HOH HOH . E 5 HOH A 95 369 95 HOH HOH . E 5 HOH A 96 370 96 HOH HOH . E 5 HOH A 97 371 97 HOH HOH . E 5 HOH A 98 372 98 HOH HOH . E 5 HOH A 99 373 99 HOH HOH . E 5 HOH A 100 374 100 HOH HOH . E 5 HOH A 101 375 101 HOH HOH . E 5 HOH A 102 376 102 HOH HOH . E 5 HOH A 103 377 103 HOH HOH . E 5 HOH A 104 378 104 HOH HOH . E 5 HOH A 105 379 105 HOH HOH . E 5 HOH A 106 380 106 HOH HOH . E 5 HOH A 107 381 107 HOH HOH . E 5 HOH A 108 382 108 HOH HOH . E 5 HOH A 109 383 109 HOH HOH . E 5 HOH A 110 384 110 HOH HOH . E 5 HOH A 111 385 111 HOH HOH . E 5 HOH A 112 386 112 HOH HOH . E 5 HOH A 113 387 113 HOH HOH . E 5 HOH A 114 388 114 HOH HOH . E 5 HOH A 115 389 115 HOH HOH . E 5 HOH A 116 390 116 HOH HOH . E 5 HOH A 117 391 117 HOH HOH . E 5 HOH A 118 392 118 HOH HOH . E 5 HOH A 119 393 119 HOH HOH . E 5 HOH A 120 394 120 HOH HOH . E 5 HOH A 121 395 121 HOH HOH . E 5 HOH A 122 396 122 HOH HOH . E 5 HOH A 123 397 123 HOH HOH . E 5 HOH A 124 398 124 HOH HOH . E 5 HOH A 125 399 125 HOH HOH . E 5 HOH A 126 400 126 HOH HOH . E 5 HOH A 127 401 127 HOH HOH . E 5 HOH A 128 402 128 HOH HOH . E 5 HOH A 129 403 129 HOH HOH . E 5 HOH A 130 404 130 HOH HOH . E 5 HOH A 131 405 131 HOH HOH . E 5 HOH A 132 406 132 HOH HOH . E 5 HOH A 133 407 133 HOH HOH . E 5 HOH A 134 408 134 HOH HOH . E 5 HOH A 135 409 135 HOH HOH . E 5 HOH A 136 410 136 HOH HOH . E 5 HOH A 137 411 137 HOH HOH . E 5 HOH A 138 412 138 HOH HOH . E 5 HOH A 139 413 139 HOH HOH . E 5 HOH A 140 414 140 HOH HOH . E 5 HOH A 141 415 141 HOH HOH . E 5 HOH A 142 416 142 HOH HOH . E 5 HOH A 143 417 143 HOH HOH . E 5 HOH A 144 418 144 HOH HOH . E 5 HOH A 145 419 145 HOH HOH . E 5 HOH A 146 420 146 HOH HOH . E 5 HOH A 147 421 147 HOH HOH . E 5 HOH A 148 422 148 HOH HOH . E 5 HOH A 149 423 149 HOH HOH . E 5 HOH A 150 424 150 HOH HOH . E 5 HOH A 151 425 151 HOH HOH . E 5 HOH A 152 426 152 HOH HOH . E 5 HOH A 153 427 153 HOH HOH . E 5 HOH A 154 428 154 HOH HOH . E 5 HOH A 155 429 155 HOH HOH . E 5 HOH A 156 430 156 HOH HOH . E 5 HOH A 157 431 157 HOH HOH . E 5 HOH A 158 432 158 HOH HOH . E 5 HOH A 159 433 159 HOH HOH . E 5 HOH A 160 434 160 HOH HOH . E 5 HOH A 161 435 161 HOH HOH . E 5 HOH A 162 436 162 HOH HOH . E 5 HOH A 163 437 163 HOH HOH . E 5 HOH A 164 438 164 HOH HOH . E 5 HOH A 165 439 165 HOH HOH . E 5 HOH A 166 440 166 HOH HOH . E 5 HOH A 167 441 167 HOH HOH . E 5 HOH A 168 442 168 HOH HOH . E 5 HOH A 169 443 169 HOH HOH . E 5 HOH A 170 444 170 HOH HOH . E 5 HOH A 171 445 171 HOH HOH . E 5 HOH A 172 446 172 HOH HOH . E 5 HOH A 173 447 173 HOH HOH . E 5 HOH A 174 448 174 HOH HOH . E 5 HOH A 175 449 175 HOH HOH . E 5 HOH A 176 450 176 HOH HOH . E 5 HOH A 177 451 177 HOH HOH . E 5 HOH A 178 452 178 HOH HOH . E 5 HOH A 179 453 179 HOH HOH . E 5 HOH A 180 454 180 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 16.08 _atom_site.Cartn_y 15.264 _atom_site.Cartn_z 37.47 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #