data_3GP2 # _model_server_result.job_id kuFHpphTTnxXPvliPi8CGQ _model_server_result.datetime_utc '2025-08-31 21:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":151}' # _entry.id 3GP2 # _exptl.entry_id 3GP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.27 _cell.angle_gamma 90 _cell.entry_id 3GP2 _cell.length_a 69.599 _cell.length_b 38.409 _cell.length_c 75.012 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 26.284805 0 61.242801 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N SER 2 B SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C ALA 21 B ALA 20 1_555 B N NH2 22 B NH2 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 F CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 D CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc19 A OD1 ASP 129 A ASP 129 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 E CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc25 C CA CA . A CA 148 1_555 G O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc26 D CA CA . A CA 149 1_555 G O HOH . A HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc27 E CA CA . A CA 150 1_555 G O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc28 F CA CA . A CA 151 1_555 G O HOH . A HOH 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GP2 _atom_sites.fract_transf_matrix[1][1] 0.014368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010162 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 148 1 CA CA . D 3 CA A 1 149 2 CA CA . E 3 CA A 1 150 3 CA CA . F 3 CA A 1 151 4 CA CA . G 4 HOH A 1 152 2 HOH HOH . G 4 HOH A 2 153 153 HOH HOH . G 4 HOH A 3 154 154 HOH HOH . G 4 HOH A 4 155 155 HOH HOH . G 4 HOH A 5 156 156 HOH HOH . G 4 HOH A 6 157 157 HOH HOH . G 4 HOH A 7 158 158 HOH HOH . G 4 HOH A 8 159 3 HOH HOH . G 4 HOH A 9 160 4 HOH HOH . G 4 HOH A 10 161 161 HOH HOH . G 4 HOH A 11 162 162 HOH HOH . G 4 HOH A 12 163 163 HOH HOH . G 4 HOH A 13 164 164 HOH HOH . G 4 HOH A 14 165 165 HOH HOH . G 4 HOH A 15 166 166 HOH HOH . G 4 HOH A 16 167 167 HOH HOH . G 4 HOH A 17 168 168 HOH HOH . G 4 HOH A 18 169 169 HOH HOH . G 4 HOH A 19 170 170 HOH HOH . G 4 HOH A 20 171 171 HOH HOH . G 4 HOH A 21 172 172 HOH HOH . G 4 HOH A 22 173 173 HOH HOH . G 4 HOH A 23 174 174 HOH HOH . G 4 HOH A 24 175 175 HOH HOH . G 4 HOH A 25 176 176 HOH HOH . G 4 HOH A 26 177 177 HOH HOH . G 4 HOH A 27 178 178 HOH HOH . G 4 HOH A 28 179 179 HOH HOH . G 4 HOH A 29 180 180 HOH HOH . G 4 HOH A 30 181 181 HOH HOH . G 4 HOH A 31 182 182 HOH HOH . G 4 HOH A 32 183 183 HOH HOH . G 4 HOH A 33 184 184 HOH HOH . G 4 HOH A 34 185 185 HOH HOH . G 4 HOH A 35 186 5 HOH HOH . G 4 HOH A 36 187 187 HOH HOH . G 4 HOH A 37 188 6 HOH HOH . G 4 HOH A 38 189 189 HOH HOH . G 4 HOH A 39 190 7 HOH HOH . G 4 HOH A 40 191 191 HOH HOH . G 4 HOH A 41 192 192 HOH HOH . G 4 HOH A 42 193 8 HOH HOH . G 4 HOH A 43 194 194 HOH HOH . G 4 HOH A 44 195 195 HOH HOH . G 4 HOH A 45 196 196 HOH HOH . G 4 HOH A 46 197 197 HOH HOH . G 4 HOH A 47 198 198 HOH HOH . G 4 HOH A 48 199 199 HOH HOH . G 4 HOH A 49 200 200 HOH HOH . G 4 HOH A 50 201 9 HOH HOH . G 4 HOH A 51 202 202 HOH HOH . G 4 HOH A 52 203 203 HOH HOH . G 4 HOH A 53 204 204 HOH HOH . G 4 HOH A 54 205 205 HOH HOH . G 4 HOH A 55 206 206 HOH HOH . G 4 HOH A 56 207 207 HOH HOH . G 4 HOH A 57 208 208 HOH HOH . G 4 HOH A 58 209 209 HOH HOH . G 4 HOH A 59 210 210 HOH HOH . G 4 HOH A 60 211 211 HOH HOH . G 4 HOH A 61 212 10 HOH HOH . G 4 HOH A 62 213 213 HOH HOH . G 4 HOH A 63 214 11 HOH HOH . G 4 HOH A 64 215 215 HOH HOH . G 4 HOH A 65 216 216 HOH HOH . G 4 HOH A 66 217 12 HOH HOH . G 4 HOH A 67 218 13 HOH HOH . G 4 HOH A 68 219 219 HOH HOH . G 4 HOH A 69 220 220 HOH HOH . G 4 HOH A 70 221 221 HOH HOH . G 4 HOH A 71 222 222 HOH HOH . G 4 HOH A 72 223 223 HOH HOH . G 4 HOH A 73 224 224 HOH HOH . G 4 HOH A 74 225 225 HOH HOH . G 4 HOH A 75 226 226 HOH HOH . G 4 HOH A 76 227 227 HOH HOH . G 4 HOH A 77 228 228 HOH HOH . G 4 HOH A 78 229 229 HOH HOH . G 4 HOH A 79 230 16 HOH HOH . G 4 HOH A 80 231 231 HOH HOH . G 4 HOH A 81 232 232 HOH HOH . G 4 HOH A 82 233 233 HOH HOH . G 4 HOH A 83 234 17 HOH HOH . G 4 HOH A 84 235 18 HOH HOH . G 4 HOH A 85 236 20 HOH HOH . G 4 HOH A 86 237 21 HOH HOH . G 4 HOH A 87 238 22 HOH HOH . G 4 HOH A 88 239 23 HOH HOH . G 4 HOH A 89 240 24 HOH HOH . G 4 HOH A 90 241 25 HOH HOH . G 4 HOH A 91 242 26 HOH HOH . G 4 HOH A 92 243 27 HOH HOH . G 4 HOH A 93 244 28 HOH HOH . G 4 HOH A 94 245 29 HOH HOH . G 4 HOH A 95 246 30 HOH HOH . G 4 HOH A 96 247 34 HOH HOH . G 4 HOH A 97 248 35 HOH HOH . G 4 HOH A 98 249 37 HOH HOH . G 4 HOH A 99 250 39 HOH HOH . G 4 HOH A 100 251 40 HOH HOH . G 4 HOH A 101 252 43 HOH HOH . G 4 HOH A 102 253 44 HOH HOH . G 4 HOH A 103 254 45 HOH HOH . G 4 HOH A 104 255 46 HOH HOH . G 4 HOH A 105 256 47 HOH HOH . G 4 HOH A 106 257 48 HOH HOH . G 4 HOH A 107 258 49 HOH HOH . G 4 HOH A 108 259 50 HOH HOH . G 4 HOH A 109 260 51 HOH HOH . G 4 HOH A 110 261 52 HOH HOH . G 4 HOH A 111 262 53 HOH HOH . G 4 HOH A 112 263 54 HOH HOH . G 4 HOH A 113 264 55 HOH HOH . G 4 HOH A 114 265 56 HOH HOH . G 4 HOH A 115 266 57 HOH HOH . G 4 HOH A 116 267 58 HOH HOH . G 4 HOH A 117 268 59 HOH HOH . G 4 HOH A 118 269 61 HOH HOH . G 4 HOH A 119 270 62 HOH HOH . G 4 HOH A 120 271 63 HOH HOH . G 4 HOH A 121 272 64 HOH HOH . G 4 HOH A 122 273 65 HOH HOH . G 4 HOH A 123 274 66 HOH HOH . G 4 HOH A 124 275 67 HOH HOH . G 4 HOH A 125 276 69 HOH HOH . G 4 HOH A 126 277 70 HOH HOH . G 4 HOH A 127 278 71 HOH HOH . G 4 HOH A 128 279 73 HOH HOH . G 4 HOH A 129 280 75 HOH HOH . G 4 HOH A 130 281 76 HOH HOH . G 4 HOH A 131 282 78 HOH HOH . G 4 HOH A 132 283 80 HOH HOH . G 4 HOH A 133 284 81 HOH HOH . G 4 HOH A 134 285 83 HOH HOH . G 4 HOH A 135 286 91 HOH HOH . G 4 HOH A 136 287 92 HOH HOH . G 4 HOH A 137 288 94 HOH HOH . G 4 HOH A 138 289 95 HOH HOH . G 4 HOH A 139 290 96 HOH HOH . G 4 HOH A 140 291 97 HOH HOH . G 4 HOH A 141 292 98 HOH HOH . G 4 HOH A 142 293 100 HOH HOH . G 4 HOH A 143 294 101 HOH HOH . G 4 HOH A 144 295 102 HOH HOH . G 4 HOH A 145 296 103 HOH HOH . G 4 HOH A 146 297 104 HOH HOH . G 4 HOH A 147 298 105 HOH HOH . G 4 HOH A 148 299 106 HOH HOH . G 4 HOH A 149 300 107 HOH HOH . G 4 HOH A 150 301 108 HOH HOH . G 4 HOH A 151 302 109 HOH HOH . G 4 HOH A 152 303 110 HOH HOH . G 4 HOH A 153 304 111 HOH HOH . G 4 HOH A 154 305 112 HOH HOH . G 4 HOH A 155 306 113 HOH HOH . G 4 HOH A 156 307 114 HOH HOH . G 4 HOH A 157 308 115 HOH HOH . G 4 HOH A 158 309 116 HOH HOH . G 4 HOH A 159 310 117 HOH HOH . G 4 HOH A 160 311 118 HOH HOH . G 4 HOH A 161 312 119 HOH HOH . G 4 HOH A 162 313 120 HOH HOH . G 4 HOH A 163 314 121 HOH HOH . G 4 HOH A 164 315 122 HOH HOH . G 4 HOH A 165 316 123 HOH HOH . G 4 HOH A 166 317 124 HOH HOH . G 4 HOH A 167 318 126 HOH HOH . G 4 HOH A 168 319 127 HOH HOH . G 4 HOH A 169 320 128 HOH HOH . G 4 HOH A 170 321 129 HOH HOH . G 4 HOH A 171 322 130 HOH HOH . G 4 HOH A 172 323 131 HOH HOH . G 4 HOH A 173 324 133 HOH HOH . G 4 HOH A 174 325 134 HOH HOH . G 4 HOH A 175 326 135 HOH HOH . G 4 HOH A 176 327 136 HOH HOH . G 4 HOH A 177 328 137 HOH HOH . G 4 HOH A 178 329 138 HOH HOH . G 4 HOH A 179 330 139 HOH HOH . G 4 HOH A 180 331 140 HOH HOH . G 4 HOH A 181 332 141 HOH HOH . G 4 HOH A 182 333 142 HOH HOH . G 4 HOH A 183 334 143 HOH HOH . G 4 HOH A 184 335 144 HOH HOH . G 4 HOH A 185 336 145 HOH HOH . G 4 HOH A 186 337 146 HOH HOH . G 4 HOH A 187 338 147 HOH HOH . G 4 HOH A 188 339 148 HOH HOH . G 4 HOH A 189 340 149 HOH HOH . G 4 HOH A 190 341 150 HOH HOH . G 4 HOH A 191 342 151 HOH HOH . H 4 HOH B 1 22 19 HOH HOH . H 4 HOH B 2 41 41 HOH HOH . H 4 HOH B 3 125 125 HOH HOH . H 4 HOH B 4 132 132 HOH HOH . H 4 HOH B 5 159 159 HOH HOH . H 4 HOH B 6 160 160 HOH HOH . H 4 HOH B 7 190 190 HOH HOH . H 4 HOH B 8 218 218 HOH HOH . H 4 HOH B 9 230 230 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.521 _atom_site.Cartn_y 29.993 _atom_site.Cartn_z 30.012 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 151 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #