data_3GP5 # _model_server_result.job_id k8XgNjVw2YtZ1DAOThEw2w _model_server_result.datetime_utc '2024-11-18 03:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":251}' # _entry.id 3GP5 # _exptl.entry_id 3GP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.939 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VANADATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.46 _cell.angle_beta 91.15 _cell.angle_gamma 107.42 _cell.entry_id 3GP5 _cell.length_a 44.749 _cell.length_b 48.983 _cell.length_c 62.96 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 17 A HIS 9 1_555 D V VO4 . A VO4 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 D V VO4 . A VO4 251 1_555 E O3 3PG . A 3PG 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc3 B NE2 HIS 17 B HIS 9 1_555 H V VO4 . B VO4 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 H V VO4 . B VO4 252 1_555 I O3 3PG . B 3PG 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'O4 V -3' _chem_comp.formula_weight 114.939 _chem_comp.id VO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'VANADATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag V O1 VO4 doub 466 n n V O2 VO4 sing 467 n n V O3 VO4 sing 468 n n V O4 VO4 sing 469 n n # _atom_sites.entry_id 3GP5 _atom_sites.fract_transf_matrix[1][1] 0.022347 _atom_sites.fract_transf_matrix[1][2] 0.00701 _atom_sites.fract_transf_matrix[1][3] 0.002558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021396 _atom_sites.fract_transf_matrix[2][3] 0.006381 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG6 A 1 250 1 PG6 PG6 . D 3 VO4 A 1 251 1 VO4 VO4 . E 4 3PG A 1 252 2 3PG 3PG . F 5 PG4 B 1 250 2 PG4 PG4 . G 5 PG4 B 1 251 3 PG4 PG4 . H 3 VO4 B 1 252 3 VO4 VO4 . I 4 3PG B 1 253 4 3PG 3PG . J 6 HOH A 1 253 2 HOH HOH . J 6 HOH A 2 254 3 HOH HOH . J 6 HOH A 3 255 5 HOH HOH . J 6 HOH A 4 256 6 HOH HOH . J 6 HOH A 5 257 10 HOH HOH . J 6 HOH A 6 258 12 HOH HOH . J 6 HOH A 7 259 13 HOH HOH . J 6 HOH A 8 260 15 HOH HOH . J 6 HOH A 9 261 16 HOH HOH . J 6 HOH A 10 262 17 HOH HOH . J 6 HOH A 11 263 18 HOH HOH . J 6 HOH A 12 264 19 HOH HOH . J 6 HOH A 13 265 22 HOH HOH . J 6 HOH A 14 266 25 HOH HOH . J 6 HOH A 15 267 31 HOH HOH . J 6 HOH A 16 268 32 HOH HOH . J 6 HOH A 17 269 36 HOH HOH . J 6 HOH A 18 270 37 HOH HOH . J 6 HOH A 19 271 38 HOH HOH . J 6 HOH A 20 272 39 HOH HOH . J 6 HOH A 21 273 40 HOH HOH . J 6 HOH A 22 274 42 HOH HOH . J 6 HOH A 23 275 45 HOH HOH . J 6 HOH A 24 276 49 HOH HOH . J 6 HOH A 25 277 55 HOH HOH . J 6 HOH A 26 278 56 HOH HOH . J 6 HOH A 27 279 57 HOH HOH . J 6 HOH A 28 280 59 HOH HOH . J 6 HOH A 29 281 60 HOH HOH . J 6 HOH A 30 282 61 HOH HOH . J 6 HOH A 31 283 62 HOH HOH . J 6 HOH A 32 284 63 HOH HOH . J 6 HOH A 33 285 64 HOH HOH . J 6 HOH A 34 286 65 HOH HOH . J 6 HOH A 35 287 66 HOH HOH . J 6 HOH A 36 288 68 HOH HOH . J 6 HOH A 37 289 69 HOH HOH . J 6 HOH A 38 290 70 HOH HOH . J 6 HOH A 39 291 71 HOH HOH . J 6 HOH A 40 292 73 HOH HOH . J 6 HOH A 41 293 74 HOH HOH . J 6 HOH A 42 294 75 HOH HOH . J 6 HOH A 43 295 76 HOH HOH . J 6 HOH A 44 296 77 HOH HOH . J 6 HOH A 45 297 78 HOH HOH . J 6 HOH A 46 298 79 HOH HOH . J 6 HOH A 47 299 83 HOH HOH . J 6 HOH A 48 300 84 HOH HOH . J 6 HOH A 49 301 85 HOH HOH . J 6 HOH A 50 302 86 HOH HOH . J 6 HOH A 51 303 87 HOH HOH . J 6 HOH A 52 304 88 HOH HOH . J 6 HOH A 53 305 89 HOH HOH . J 6 HOH A 54 306 90 HOH HOH . J 6 HOH A 55 307 91 HOH HOH . J 6 HOH A 56 308 92 HOH HOH . J 6 HOH A 57 309 93 HOH HOH . J 6 HOH A 58 310 94 HOH HOH . J 6 HOH A 59 311 95 HOH HOH . J 6 HOH A 60 312 96 HOH HOH . J 6 HOH A 61 313 97 HOH HOH . J 6 HOH A 62 314 98 HOH HOH . J 6 HOH A 63 315 99 HOH HOH . J 6 HOH A 64 316 100 HOH HOH . J 6 HOH A 65 317 101 HOH HOH . J 6 HOH A 66 318 104 HOH HOH . J 6 HOH A 67 320 116 HOH HOH . J 6 HOH A 68 321 118 HOH HOH . J 6 HOH A 69 322 123 HOH HOH . J 6 HOH A 70 323 154 HOH HOH . J 6 HOH A 71 324 155 HOH HOH . J 6 HOH A 72 325 156 HOH HOH . J 6 HOH A 73 326 157 HOH HOH . J 6 HOH A 74 327 158 HOH HOH . J 6 HOH A 75 328 159 HOH HOH . J 6 HOH A 76 329 160 HOH HOH . J 6 HOH A 77 330 161 HOH HOH . J 6 HOH A 78 331 162 HOH HOH . J 6 HOH A 79 332 163 HOH HOH . J 6 HOH A 80 333 164 HOH HOH . J 6 HOH A 81 334 165 HOH HOH . J 6 HOH A 82 335 166 HOH HOH . J 6 HOH A 83 336 167 HOH HOH . J 6 HOH A 84 337 168 HOH HOH . J 6 HOH A 85 338 169 HOH HOH . J 6 HOH A 86 339 170 HOH HOH . J 6 HOH A 87 340 172 HOH HOH . J 6 HOH A 88 341 173 HOH HOH . J 6 HOH A 89 342 174 HOH HOH . J 6 HOH A 90 343 175 HOH HOH . J 6 HOH A 91 344 176 HOH HOH . J 6 HOH A 92 345 177 HOH HOH . J 6 HOH A 93 346 178 HOH HOH . J 6 HOH A 94 347 179 HOH HOH . J 6 HOH A 95 348 180 HOH HOH . J 6 HOH A 96 349 181 HOH HOH . J 6 HOH A 97 350 182 HOH HOH . J 6 HOH A 98 351 183 HOH HOH . J 6 HOH A 99 352 185 HOH HOH . J 6 HOH A 100 353 186 HOH HOH . J 6 HOH A 101 354 187 HOH HOH . J 6 HOH A 102 355 188 HOH HOH . J 6 HOH A 103 356 189 HOH HOH . J 6 HOH A 104 357 190 HOH HOH . J 6 HOH A 105 358 191 HOH HOH . J 6 HOH A 106 359 192 HOH HOH . J 6 HOH A 107 360 195 HOH HOH . J 6 HOH A 108 361 196 HOH HOH . J 6 HOH A 109 362 197 HOH HOH . J 6 HOH A 110 363 224 HOH HOH . K 6 HOH B 1 254 1 HOH HOH . K 6 HOH B 2 255 4 HOH HOH . K 6 HOH B 3 256 7 HOH HOH . K 6 HOH B 4 257 8 HOH HOH . K 6 HOH B 5 258 9 HOH HOH . K 6 HOH B 6 259 11 HOH HOH . K 6 HOH B 7 260 14 HOH HOH . K 6 HOH B 8 261 20 HOH HOH . K 6 HOH B 9 262 21 HOH HOH . K 6 HOH B 10 263 23 HOH HOH . K 6 HOH B 11 264 24 HOH HOH . K 6 HOH B 12 265 26 HOH HOH . K 6 HOH B 13 266 27 HOH HOH . K 6 HOH B 14 267 28 HOH HOH . K 6 HOH B 15 268 29 HOH HOH . K 6 HOH B 16 269 30 HOH HOH . K 6 HOH B 17 270 33 HOH HOH . K 6 HOH B 18 271 34 HOH HOH . K 6 HOH B 19 272 35 HOH HOH . K 6 HOH B 20 273 41 HOH HOH . K 6 HOH B 21 274 43 HOH HOH . K 6 HOH B 22 275 44 HOH HOH . K 6 HOH B 23 276 46 HOH HOH . K 6 HOH B 24 277 47 HOH HOH . K 6 HOH B 25 278 48 HOH HOH . K 6 HOH B 26 279 50 HOH HOH . K 6 HOH B 27 280 51 HOH HOH . K 6 HOH B 28 281 52 HOH HOH . K 6 HOH B 29 282 53 HOH HOH . K 6 HOH B 30 283 54 HOH HOH . K 6 HOH B 31 284 58 HOH HOH . K 6 HOH B 32 285 67 HOH HOH . K 6 HOH B 33 286 72 HOH HOH . K 6 HOH B 34 287 80 HOH HOH . K 6 HOH B 35 288 81 HOH HOH . K 6 HOH B 36 289 82 HOH HOH . K 6 HOH B 37 290 102 HOH HOH . K 6 HOH B 38 291 103 HOH HOH . K 6 HOH B 39 292 105 HOH HOH . K 6 HOH B 40 293 106 HOH HOH . K 6 HOH B 41 294 107 HOH HOH . K 6 HOH B 42 295 108 HOH HOH . K 6 HOH B 43 296 109 HOH HOH . K 6 HOH B 44 297 110 HOH HOH . K 6 HOH B 45 298 111 HOH HOH . K 6 HOH B 46 299 112 HOH HOH . K 6 HOH B 47 300 113 HOH HOH . K 6 HOH B 48 301 114 HOH HOH . K 6 HOH B 49 302 117 HOH HOH . K 6 HOH B 50 303 119 HOH HOH . K 6 HOH B 51 304 120 HOH HOH . K 6 HOH B 52 305 121 HOH HOH . K 6 HOH B 53 306 122 HOH HOH . K 6 HOH B 54 307 124 HOH HOH . K 6 HOH B 55 308 125 HOH HOH . K 6 HOH B 56 309 126 HOH HOH . K 6 HOH B 57 310 127 HOH HOH . K 6 HOH B 58 311 128 HOH HOH . K 6 HOH B 59 312 129 HOH HOH . K 6 HOH B 60 313 130 HOH HOH . K 6 HOH B 61 314 131 HOH HOH . K 6 HOH B 62 315 132 HOH HOH . K 6 HOH B 63 316 133 HOH HOH . K 6 HOH B 64 317 134 HOH HOH . K 6 HOH B 65 318 135 HOH HOH . K 6 HOH B 66 319 115 HOH HOH . K 6 HOH B 67 320 137 HOH HOH . K 6 HOH B 68 321 138 HOH HOH . K 6 HOH B 69 322 139 HOH HOH . K 6 HOH B 70 323 140 HOH HOH . K 6 HOH B 71 324 141 HOH HOH . K 6 HOH B 72 325 142 HOH HOH . K 6 HOH B 73 326 143 HOH HOH . K 6 HOH B 74 327 144 HOH HOH . K 6 HOH B 75 328 145 HOH HOH . K 6 HOH B 76 329 146 HOH HOH . K 6 HOH B 77 330 147 HOH HOH . K 6 HOH B 78 331 148 HOH HOH . K 6 HOH B 79 332 149 HOH HOH . K 6 HOH B 80 333 150 HOH HOH . K 6 HOH B 81 334 151 HOH HOH . K 6 HOH B 82 335 152 HOH HOH . K 6 HOH B 83 336 153 HOH HOH . K 6 HOH B 84 337 171 HOH HOH . K 6 HOH B 85 338 184 HOH HOH . K 6 HOH B 86 339 193 HOH HOH . K 6 HOH B 87 340 194 HOH HOH . K 6 HOH B 88 341 198 HOH HOH . K 6 HOH B 89 342 199 HOH HOH . K 6 HOH B 90 343 200 HOH HOH . K 6 HOH B 91 344 201 HOH HOH . K 6 HOH B 92 345 202 HOH HOH . K 6 HOH B 93 346 203 HOH HOH . K 6 HOH B 94 347 204 HOH HOH . K 6 HOH B 95 348 205 HOH HOH . K 6 HOH B 96 349 206 HOH HOH . K 6 HOH B 97 350 207 HOH HOH . K 6 HOH B 98 351 208 HOH HOH . K 6 HOH B 99 352 209 HOH HOH . K 6 HOH B 100 353 210 HOH HOH . K 6 HOH B 101 354 211 HOH HOH . K 6 HOH B 102 355 212 HOH HOH . K 6 HOH B 103 356 213 HOH HOH . K 6 HOH B 104 357 214 HOH HOH . K 6 HOH B 105 358 215 HOH HOH . K 6 HOH B 106 359 216 HOH HOH . K 6 HOH B 107 360 217 HOH HOH . K 6 HOH B 108 361 218 HOH HOH . K 6 HOH B 109 362 219 HOH HOH . K 6 HOH B 110 363 220 HOH HOH . K 6 HOH B 111 364 221 HOH HOH . K 6 HOH B 112 365 222 HOH HOH . K 6 HOH B 113 366 223 HOH HOH . K 6 HOH B 114 367 225 HOH HOH . K 6 HOH B 115 368 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 V V VO4 . . . D 3 1.669 -22.473 31.04 1 17.72 ? V VO4 251 A 1 HETATM 2 O O1 VO4 . . . D 3 3.248 -21.563 31.62 1 16.33 ? O1 VO4 251 A 1 HETATM 3 O O2 VO4 . . . D 3 2.001 -24.09 30.109 1 17.09 ? O2 VO4 251 A 1 HETATM 4 O O4 VO4 . . . D 3 0.261 -22.293 32.29 1 17.35 ? O4 VO4 251 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #