data_3GPE # _model_server_result.job_id L3DzDnQmVxxXgyhLiVxGPw _model_server_result.datetime_utc '2024-11-27 01:04:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gpe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 3GPE # _exptl.entry_id 3GPE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GPE _cell.length_a 57.848 _cell.length_b 57.848 _cell.length_c 90.479 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 31 A MET 186 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD1 ASP 32 A ASP 187 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 A OD1 ASP 32 A ASP 187 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc4 A OD2 ASP 32 A ASP 187 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc5 A OD2 ASP 38 A ASP 193 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc6 A OD2 ASP 91 A ASP 246 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc7 A OD1 ASP 91 A ASP 246 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 A O TRP 92 A TRP 247 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 A OD1 ASP 93 A ASP 248 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc10 A OD2 ASP 93 A ASP 248 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc11 A OD1 ASP 93 A ASP 248 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc12 A OD2 ASP 93 A ASP 248 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc13 A OG1 THR 96 A THR 251 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc14 A O ARG 97 A ARG 252 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc15 A OD2 ASP 99 A ASP 254 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc16 A OD1 ASP 99 A ASP 254 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc17 A OD2 ASP 99 A ASP 254 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc18 G O HOH . A HOH 304 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc19 E O4 PO4 . A PO4 401 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GPE _atom_sites.fract_transf_matrix[1][1] 0.017287 _atom_sites.fract_transf_matrix[1][2] 0.00998 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 501 CA CA . C 2 CA A 1 502 502 CA CA . D 2 CA A 1 503 503 CA CA . E 3 PO4 A 1 401 401 PO4 PO4 . F 4 PT5 A 1 600 600 PT5 PIO . G 5 HOH A 1 1 1 HOH HOH . G 5 HOH A 2 2 2 HOH HOH . G 5 HOH A 3 3 3 HOH HOH . G 5 HOH A 4 4 4 HOH HOH . G 5 HOH A 5 5 5 HOH HOH . G 5 HOH A 6 6 6 HOH HOH . G 5 HOH A 7 7 7 HOH HOH . G 5 HOH A 8 8 8 HOH HOH . G 5 HOH A 9 9 9 HOH HOH . G 5 HOH A 10 10 10 HOH HOH . G 5 HOH A 11 11 11 HOH HOH . G 5 HOH A 12 12 12 HOH HOH . G 5 HOH A 13 13 13 HOH HOH . G 5 HOH A 14 14 14 HOH HOH . G 5 HOH A 15 15 15 HOH HOH . G 5 HOH A 16 16 16 HOH HOH . G 5 HOH A 17 17 17 HOH HOH . G 5 HOH A 18 18 18 HOH HOH . G 5 HOH A 19 19 19 HOH HOH . G 5 HOH A 20 20 20 HOH HOH . G 5 HOH A 21 21 21 HOH HOH . G 5 HOH A 22 22 22 HOH HOH . G 5 HOH A 23 23 23 HOH HOH . G 5 HOH A 24 24 24 HOH HOH . G 5 HOH A 25 25 25 HOH HOH . G 5 HOH A 26 26 26 HOH HOH . G 5 HOH A 27 27 27 HOH HOH . G 5 HOH A 28 28 28 HOH HOH . G 5 HOH A 29 29 29 HOH HOH . G 5 HOH A 30 30 30 HOH HOH . G 5 HOH A 31 31 31 HOH HOH . G 5 HOH A 32 32 32 HOH HOH . G 5 HOH A 33 33 33 HOH HOH . G 5 HOH A 34 34 34 HOH HOH . G 5 HOH A 35 35 35 HOH HOH . G 5 HOH A 36 36 36 HOH HOH . G 5 HOH A 37 37 37 HOH HOH . G 5 HOH A 38 38 38 HOH HOH . G 5 HOH A 39 39 39 HOH HOH . G 5 HOH A 40 40 40 HOH HOH . G 5 HOH A 41 41 41 HOH HOH . G 5 HOH A 42 42 42 HOH HOH . G 5 HOH A 43 43 43 HOH HOH . G 5 HOH A 44 44 44 HOH HOH . G 5 HOH A 45 45 45 HOH HOH . G 5 HOH A 46 46 46 HOH HOH . G 5 HOH A 47 47 47 HOH HOH . G 5 HOH A 48 48 48 HOH HOH . G 5 HOH A 49 49 49 HOH HOH . G 5 HOH A 50 50 50 HOH HOH . G 5 HOH A 51 52 52 HOH HOH . G 5 HOH A 52 53 53 HOH HOH . G 5 HOH A 53 54 54 HOH HOH . G 5 HOH A 54 55 55 HOH HOH . G 5 HOH A 55 56 56 HOH HOH . G 5 HOH A 56 57 57 HOH HOH . G 5 HOH A 57 58 58 HOH HOH . G 5 HOH A 58 59 59 HOH HOH . G 5 HOH A 59 60 60 HOH HOH . G 5 HOH A 60 61 61 HOH HOH . G 5 HOH A 61 62 62 HOH HOH . G 5 HOH A 62 63 63 HOH HOH . G 5 HOH A 63 64 64 HOH HOH . G 5 HOH A 64 65 65 HOH HOH . G 5 HOH A 65 302 302 HOH HOH . G 5 HOH A 66 303 303 HOH HOH . G 5 HOH A 67 304 304 HOH HOH . G 5 HOH A 68 305 305 HOH HOH . G 5 HOH A 69 306 306 HOH HOH . G 5 HOH A 70 307 307 HOH HOH . G 5 HOH A 71 308 308 HOH HOH . G 5 HOH A 72 310 310 HOH HOH . G 5 HOH A 73 312 312 HOH HOH . G 5 HOH A 74 313 313 HOH HOH . G 5 HOH A 75 314 314 HOH HOH . G 5 HOH A 76 315 315 HOH HOH . G 5 HOH A 77 316 316 HOH HOH . G 5 HOH A 78 317 317 HOH HOH . G 5 HOH A 79 318 318 HOH HOH . G 5 HOH A 80 319 319 HOH HOH . G 5 HOH A 81 321 321 HOH HOH . G 5 HOH A 82 323 323 HOH HOH . G 5 HOH A 83 324 324 HOH HOH . G 5 HOH A 84 325 325 HOH HOH . G 5 HOH A 85 326 326 HOH HOH . G 5 HOH A 86 330 330 HOH HOH . G 5 HOH A 87 332 332 HOH HOH . G 5 HOH A 88 333 333 HOH HOH . G 5 HOH A 89 334 334 HOH HOH . G 5 HOH A 90 335 335 HOH HOH . G 5 HOH A 91 337 337 HOH HOH . G 5 HOH A 92 339 339 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.626 _atom_site.Cartn_y -18.695 _atom_site.Cartn_z 15.221 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #