data_3GPI
#
_model_server_result.job_id            zhFufa0vUJfa2I6cz1g0VQ 
_model_server_result.datetime_utc      '2025-01-03 03:35:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":287}' 
#
_entry.id    3GPI 
#
_exptl.entry_id    3GPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GPI 
_cell.length_a            35.574 
_cell.length_b            68.892 
_cell.length_c            96.141 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3GPI 
_atom_sites.fract_transf_matrix[1][1]    0.02811 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 285 1 EDO EDO . 
C 2 EDO A 1 286 2 EDO EDO . 
D 2 EDO A 1 287 3 EDO EDO . 
E 3 HOH A 1 288 1 HOH HOH . 
E 3 HOH A 2 289 2 HOH HOH . 
E 3 HOH A 3 290 3 HOH HOH . 
E 3 HOH A 4 291 4 HOH HOH . 
E 3 HOH A 5 292 5 HOH HOH . 
E 3 HOH A 6 293 6 HOH HOH . 
E 3 HOH A 7 294 7 HOH HOH . 
E 3 HOH A 8 295 8 HOH HOH . 
E 3 HOH A 9 296 9 HOH HOH . 
E 3 HOH A 10 297 10 HOH HOH . 
E 3 HOH A 11 298 11 HOH HOH . 
E 3 HOH A 12 299 12 HOH HOH . 
E 3 HOH A 13 300 13 HOH HOH . 
E 3 HOH A 14 301 14 HOH HOH . 
E 3 HOH A 15 302 15 HOH HOH . 
E 3 HOH A 16 303 16 HOH HOH . 
E 3 HOH A 17 304 17 HOH HOH . 
E 3 HOH A 18 305 18 HOH HOH . 
E 3 HOH A 19 306 19 HOH HOH . 
E 3 HOH A 20 307 20 HOH HOH . 
E 3 HOH A 21 308 21 HOH HOH . 
E 3 HOH A 22 309 22 HOH HOH . 
E 3 HOH A 23 310 23 HOH HOH . 
E 3 HOH A 24 311 24 HOH HOH . 
E 3 HOH A 25 312 25 HOH HOH . 
E 3 HOH A 26 313 26 HOH HOH . 
E 3 HOH A 27 314 27 HOH HOH . 
E 3 HOH A 28 315 28 HOH HOH . 
E 3 HOH A 29 316 29 HOH HOH . 
E 3 HOH A 30 317 30 HOH HOH . 
E 3 HOH A 31 318 31 HOH HOH . 
E 3 HOH A 32 319 32 HOH HOH . 
E 3 HOH A 33 320 33 HOH HOH . 
E 3 HOH A 34 321 34 HOH HOH . 
E 3 HOH A 35 322 35 HOH HOH . 
E 3 HOH A 36 323 36 HOH HOH . 
E 3 HOH A 37 324 37 HOH HOH . 
E 3 HOH A 38 325 38 HOH HOH . 
E 3 HOH A 39 326 39 HOH HOH . 
E 3 HOH A 40 327 40 HOH HOH . 
E 3 HOH A 41 328 41 HOH HOH . 
E 3 HOH A 42 329 42 HOH HOH . 
E 3 HOH A 43 330 43 HOH HOH . 
E 3 HOH A 44 331 44 HOH HOH . 
E 3 HOH A 45 332 45 HOH HOH . 
E 3 HOH A 46 333 46 HOH HOH . 
E 3 HOH A 47 334 47 HOH HOH . 
E 3 HOH A 48 335 48 HOH HOH . 
E 3 HOH A 49 336 49 HOH HOH . 
E 3 HOH A 50 337 50 HOH HOH . 
E 3 HOH A 51 338 51 HOH HOH . 
E 3 HOH A 52 339 52 HOH HOH . 
E 3 HOH A 53 340 53 HOH HOH . 
E 3 HOH A 54 341 54 HOH HOH . 
E 3 HOH A 55 342 55 HOH HOH . 
E 3 HOH A 56 343 56 HOH HOH . 
E 3 HOH A 57 344 57 HOH HOH . 
E 3 HOH A 58 345 58 HOH HOH . 
E 3 HOH A 59 346 59 HOH HOH . 
E 3 HOH A 60 347 60 HOH HOH . 
E 3 HOH A 61 348 61 HOH HOH . 
E 3 HOH A 62 349 62 HOH HOH . 
E 3 HOH A 63 350 63 HOH HOH . 
E 3 HOH A 64 351 64 HOH HOH . 
E 3 HOH A 65 352 65 HOH HOH . 
E 3 HOH A 66 353 66 HOH HOH . 
E 3 HOH A 67 354 67 HOH HOH . 
E 3 HOH A 68 355 68 HOH HOH . 
E 3 HOH A 69 356 69 HOH HOH . 
E 3 HOH A 70 357 70 HOH HOH . 
E 3 HOH A 71 358 71 HOH HOH . 
E 3 HOH A 72 359 72 HOH HOH . 
E 3 HOH A 73 360 73 HOH HOH . 
E 3 HOH A 74 361 74 HOH HOH . 
E 3 HOH A 75 362 75 HOH HOH . 
E 3 HOH A 76 363 76 HOH HOH . 
E 3 HOH A 77 364 77 HOH HOH . 
E 3 HOH A 78 365 78 HOH HOH . 
E 3 HOH A 79 366 79 HOH HOH . 
E 3 HOH A 80 367 80 HOH HOH . 
E 3 HOH A 81 368 81 HOH HOH . 
E 3 HOH A 82 369 82 HOH HOH . 
E 3 HOH A 83 370 83 HOH HOH . 
E 3 HOH A 84 371 84 HOH HOH . 
E 3 HOH A 85 372 85 HOH HOH . 
E 3 HOH A 86 373 86 HOH HOH . 
E 3 HOH A 87 374 87 HOH HOH . 
E 3 HOH A 88 375 88 HOH HOH . 
E 3 HOH A 89 376 89 HOH HOH . 
E 3 HOH A 90 377 90 HOH HOH . 
E 3 HOH A 91 378 91 HOH HOH . 
E 3 HOH A 92 379 92 HOH HOH . 
E 3 HOH A 93 380 93 HOH HOH . 
E 3 HOH A 94 381 94 HOH HOH . 
E 3 HOH A 95 382 95 HOH HOH . 
E 3 HOH A 96 383 96 HOH HOH . 
E 3 HOH A 97 384 97 HOH HOH . 
E 3 HOH A 98 385 98 HOH HOH . 
E 3 HOH A 99 386 99 HOH HOH . 
E 3 HOH A 100 387 100 HOH HOH . 
E 3 HOH A 101 388 101 HOH HOH . 
E 3 HOH A 102 389 102 HOH HOH . 
E 3 HOH A 103 390 103 HOH HOH . 
E 3 HOH A 104 391 104 HOH HOH . 
E 3 HOH A 105 392 105 HOH HOH . 
E 3 HOH A 106 393 106 HOH HOH . 
E 3 HOH A 107 394 107 HOH HOH . 
E 3 HOH A 108 395 108 HOH HOH . 
E 3 HOH A 109 396 109 HOH HOH . 
E 3 HOH A 110 397 110 HOH HOH . 
E 3 HOH A 111 398 111 HOH HOH . 
E 3 HOH A 112 399 112 HOH HOH . 
E 3 HOH A 113 400 113 HOH HOH . 
E 3 HOH A 114 401 114 HOH HOH . 
E 3 HOH A 115 402 115 HOH HOH . 
E 3 HOH A 116 403 116 HOH HOH . 
E 3 HOH A 117 404 117 HOH HOH . 
E 3 HOH A 118 405 118 HOH HOH . 
E 3 HOH A 119 406 119 HOH HOH . 
E 3 HOH A 120 407 120 HOH HOH . 
E 3 HOH A 121 408 121 HOH HOH . 
E 3 HOH A 122 409 122 HOH HOH . 
E 3 HOH A 123 410 123 HOH HOH . 
E 3 HOH A 124 411 124 HOH HOH . 
E 3 HOH A 125 412 125 HOH HOH . 
E 3 HOH A 126 413 126 HOH HOH . 
E 3 HOH A 127 414 127 HOH HOH . 
E 3 HOH A 128 415 128 HOH HOH . 
E 3 HOH A 129 416 129 HOH HOH . 
E 3 HOH A 130 417 130 HOH HOH . 
E 3 HOH A 131 418 131 HOH HOH . 
E 3 HOH A 132 419 132 HOH HOH . 
E 3 HOH A 133 420 133 HOH HOH . 
E 3 HOH A 134 421 134 HOH HOH . 
E 3 HOH A 135 422 135 HOH HOH . 
E 3 HOH A 136 423 136 HOH HOH . 
E 3 HOH A 137 424 137 HOH HOH . 
E 3 HOH A 138 425 138 HOH HOH . 
E 3 HOH A 139 426 139 HOH HOH . 
E 3 HOH A 140 427 140 HOH HOH . 
E 3 HOH A 141 428 141 HOH HOH . 
E 3 HOH A 142 429 142 HOH HOH . 
E 3 HOH A 143 430 143 HOH HOH . 
E 3 HOH A 144 431 144 HOH HOH . 
E 3 HOH A 145 432 145 HOH HOH . 
E 3 HOH A 146 433 146 HOH HOH . 
E 3 HOH A 147 434 147 HOH HOH . 
E 3 HOH A 148 435 148 HOH HOH . 
E 3 HOH A 149 436 149 HOH HOH . 
E 3 HOH A 150 437 150 HOH HOH . 
E 3 HOH A 151 438 151 HOH HOH . 
E 3 HOH A 152 439 152 HOH HOH . 
E 3 HOH A 153 440 153 HOH HOH . 
E 3 HOH A 154 441 154 HOH HOH . 
E 3 HOH A 155 442 155 HOH HOH . 
E 3 HOH A 156 443 156 HOH HOH . 
E 3 HOH A 157 444 157 HOH HOH . 
E 3 HOH A 158 445 158 HOH HOH . 
E 3 HOH A 159 446 159 HOH HOH . 
E 3 HOH A 160 447 160 HOH HOH . 
E 3 HOH A 161 448 161 HOH HOH . 
E 3 HOH A 162 449 162 HOH HOH . 
E 3 HOH A 163 450 163 HOH HOH . 
E 3 HOH A 164 451 164 HOH HOH . 
E 3 HOH A 165 452 165 HOH HOH . 
E 3 HOH A 166 453 166 HOH HOH . 
E 3 HOH A 167 454 167 HOH HOH . 
E 3 HOH A 168 455 168 HOH HOH . 
E 3 HOH A 169 456 169 HOH HOH . 
E 3 HOH A 170 457 170 HOH HOH . 
E 3 HOH A 171 458 171 HOH HOH . 
E 3 HOH A 172 459 172 HOH HOH . 
E 3 HOH A 173 460 173 HOH HOH . 
E 3 HOH A 174 461 174 HOH HOH . 
E 3 HOH A 175 462 175 HOH HOH . 
E 3 HOH A 176 463 176 HOH HOH . 
E 3 HOH A 177 464 177 HOH HOH . 
E 3 HOH A 178 465 178 HOH HOH . 
E 3 HOH A 179 466 179 HOH HOH . 
E 3 HOH A 180 467 180 HOH HOH . 
E 3 HOH A 181 468 181 HOH HOH . 
E 3 HOH A 182 469 182 HOH HOH . 
E 3 HOH A 183 470 183 HOH HOH . 
E 3 HOH A 184 471 184 HOH HOH . 
E 3 HOH A 185 472 185 HOH HOH . 
E 3 HOH A 186 473 186 HOH HOH . 
E 3 HOH A 187 474 187 HOH HOH . 
E 3 HOH A 188 475 188 HOH HOH . 
E 3 HOH A 189 476 189 HOH HOH . 
E 3 HOH A 190 477 190 HOH HOH . 
E 3 HOH A 191 478 191 HOH HOH . 
E 3 HOH A 192 479 192 HOH HOH . 
E 3 HOH A 193 480 193 HOH HOH . 
E 3 HOH A 194 481 194 HOH HOH . 
E 3 HOH A 195 482 195 HOH HOH . 
E 3 HOH A 196 483 196 HOH HOH . 
E 3 HOH A 197 484 197 HOH HOH . 
E 3 HOH A 198 485 198 HOH HOH . 
E 3 HOH A 199 486 199 HOH HOH . 
E 3 HOH A 200 487 200 HOH HOH . 
E 3 HOH A 201 488 201 HOH HOH . 
E 3 HOH A 202 489 202 HOH HOH . 
E 3 HOH A 203 490 203 HOH HOH . 
E 3 HOH A 204 491 204 HOH HOH . 
E 3 HOH A 205 492 205 HOH HOH . 
E 3 HOH A 206 493 206 HOH HOH . 
E 3 HOH A 207 494 207 HOH HOH . 
E 3 HOH A 208 495 208 HOH HOH . 
E 3 HOH A 209 496 209 HOH HOH . 
E 3 HOH A 210 497 210 HOH HOH . 
E 3 HOH A 211 498 211 HOH HOH . 
E 3 HOH A 212 499 212 HOH HOH . 
E 3 HOH A 213 500 213 HOH HOH . 
E 3 HOH A 214 501 214 HOH HOH . 
E 3 HOH A 215 502 215 HOH HOH . 
E 3 HOH A 216 503 216 HOH HOH . 
E 3 HOH A 217 504 217 HOH HOH . 
E 3 HOH A 218 505 218 HOH HOH . 
E 3 HOH A 219 506 219 HOH HOH . 
E 3 HOH A 220 507 220 HOH HOH . 
E 3 HOH A 221 508 221 HOH HOH . 
E 3 HOH A 222 509 222 HOH HOH . 
E 3 HOH A 223 510 223 HOH HOH . 
E 3 HOH A 224 511 224 HOH HOH . 
E 3 HOH A 225 512 225 HOH HOH . 
E 3 HOH A 226 513 226 HOH HOH . 
E 3 HOH A 227 514 227 HOH HOH . 
E 3 HOH A 228 515 228 HOH HOH . 
E 3 HOH A 229 516 229 HOH HOH . 
E 3 HOH A 230 517 230 HOH HOH . 
E 3 HOH A 231 518 231 HOH HOH . 
E 3 HOH A 232 519 232 HOH HOH . 
E 3 HOH A 233 520 233 HOH HOH . 
E 3 HOH A 234 521 234 HOH HOH . 
E 3 HOH A 235 522 235 HOH HOH . 
E 3 HOH A 236 523 236 HOH HOH . 
E 3 HOH A 237 524 237 HOH HOH . 
E 3 HOH A 238 525 238 HOH HOH . 
E 3 HOH A 239 526 239 HOH HOH . 
E 3 HOH A 240 527 240 HOH HOH . 
E 3 HOH A 241 528 241 HOH HOH . 
E 3 HOH A 242 529 242 HOH HOH . 
E 3 HOH A 243 530 243 HOH HOH . 
E 3 HOH A 244 531 244 HOH HOH . 
E 3 HOH A 245 532 245 HOH HOH . 
E 3 HOH A 246 533 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 -17.405 71.936 -1.376 1 26.04 ? C1 EDO 287 A 1 
HETATM 2 O O1 EDO . . . D 2 -18.151 73.145 -1.51 1 26.65 ? O1 EDO 287 A 1 
HETATM 3 C C2 EDO . . . D 2 -16.37 71.785 -2.489 1 30.03 ? C2 EDO 287 A 1 
HETATM 4 O O2 EDO . . . D 2 -16.54 72.791 -3.506 1 35.18 ? O2 EDO 287 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#