data_3GPK
#
_model_server_result.job_id            zQHmUQ2qcu8vmDbd7GtP5w 
_model_server_result.datetime_utc      '2025-02-05 11:38:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    3GPK 
#
_exptl.entry_id    3GPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.27 
_cell.angle_gamma         90 
_cell.entry_id            3GPK 
_cell.length_a            40.02 
_cell.length_b            61.407 
_cell.length_c            41.074 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 79 A SER 281 1_555 A N MSE 80 A MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 80 A MSE 282 1_555 A N GLY 81 A GLY 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C SER 79 B SER 281 1_555 B N MSE 80 B MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C MSE 80 B MSE 282 1_555 B N GLY 81 B GLY 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 277 n n 
S O2 SO4 doub 278 n n 
S O3 SO4 sing 279 n n 
S O4 SO4 sing 280 n n 
#
_atom_sites.entry_id                     3GPK 
_atom_sites.fract_transf_matrix[1][1]    0.024988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000118 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 600 600 SO4 SO4 . 
D 2 SO4 A 1 601 601 SO4 SO4 . 
E 3 HOH A 1 3 3 HOH TIP . 
E 3 HOH A 2 4 4 HOH TIP . 
E 3 HOH A 3 5 5 HOH TIP . 
E 3 HOH A 4 7 7 HOH TIP . 
E 3 HOH A 5 8 8 HOH TIP . 
E 3 HOH A 6 13 13 HOH TIP . 
E 3 HOH A 7 15 15 HOH TIP . 
E 3 HOH A 8 16 16 HOH TIP . 
E 3 HOH A 9 18 18 HOH TIP . 
E 3 HOH A 10 19 19 HOH TIP . 
E 3 HOH A 11 21 21 HOH TIP . 
E 3 HOH A 12 24 24 HOH TIP . 
E 3 HOH A 13 26 26 HOH TIP . 
E 3 HOH A 14 30 30 HOH TIP . 
E 3 HOH A 15 32 32 HOH TIP . 
E 3 HOH A 16 35 35 HOH TIP . 
E 3 HOH A 17 36 36 HOH TIP . 
E 3 HOH A 18 40 40 HOH TIP . 
E 3 HOH A 19 43 43 HOH TIP . 
E 3 HOH A 20 44 44 HOH TIP . 
E 3 HOH A 21 46 46 HOH TIP . 
E 3 HOH A 22 47 47 HOH TIP . 
E 3 HOH A 23 49 49 HOH TIP . 
E 3 HOH A 24 50 50 HOH TIP . 
E 3 HOH A 25 51 51 HOH TIP . 
E 3 HOH A 26 52 52 HOH TIP . 
E 3 HOH A 27 53 53 HOH TIP . 
E 3 HOH A 28 54 54 HOH TIP . 
E 3 HOH A 29 55 55 HOH TIP . 
E 3 HOH A 30 66 66 HOH TIP . 
E 3 HOH A 31 68 68 HOH TIP . 
E 3 HOH A 32 69 69 HOH TIP . 
E 3 HOH A 33 70 70 HOH TIP . 
E 3 HOH A 34 79 79 HOH TIP . 
E 3 HOH A 35 80 80 HOH TIP . 
E 3 HOH A 36 82 82 HOH TIP . 
E 3 HOH A 37 83 83 HOH TIP . 
E 3 HOH A 38 84 84 HOH TIP . 
E 3 HOH A 39 87 87 HOH TIP . 
E 3 HOH A 40 93 93 HOH TIP . 
E 3 HOH A 41 95 95 HOH TIP . 
E 3 HOH A 42 101 101 HOH TIP . 
E 3 HOH A 43 102 102 HOH TIP . 
E 3 HOH A 44 103 103 HOH TIP . 
E 3 HOH A 45 104 104 HOH TIP . 
E 3 HOH A 46 108 108 HOH TIP . 
E 3 HOH A 47 110 110 HOH TIP . 
E 3 HOH A 48 111 111 HOH TIP . 
E 3 HOH A 49 113 113 HOH TIP . 
E 3 HOH A 50 115 115 HOH TIP . 
E 3 HOH A 51 116 116 HOH TIP . 
E 3 HOH A 52 118 118 HOH TIP . 
E 3 HOH A 53 120 120 HOH TIP . 
E 3 HOH A 54 123 123 HOH TIP . 
E 3 HOH A 55 124 124 HOH TIP . 
E 3 HOH A 56 125 125 HOH TIP . 
E 3 HOH A 57 126 126 HOH TIP . 
E 3 HOH A 58 127 127 HOH TIP . 
E 3 HOH A 59 129 129 HOH TIP . 
E 3 HOH A 60 131 131 HOH TIP . 
E 3 HOH A 61 132 132 HOH TIP . 
E 3 HOH A 62 135 135 HOH TIP . 
E 3 HOH A 63 136 136 HOH TIP . 
E 3 HOH A 64 137 137 HOH TIP . 
E 3 HOH A 65 138 138 HOH TIP . 
E 3 HOH A 66 139 139 HOH TIP . 
E 3 HOH A 67 140 140 HOH TIP . 
E 3 HOH A 68 141 141 HOH TIP . 
E 3 HOH A 69 142 142 HOH TIP . 
E 3 HOH A 70 146 146 HOH TIP . 
E 3 HOH A 71 152 152 HOH TIP . 
E 3 HOH A 72 154 154 HOH TIP . 
E 3 HOH A 73 155 155 HOH TIP . 
E 3 HOH A 74 157 157 HOH TIP . 
E 3 HOH A 75 158 158 HOH TIP . 
E 3 HOH A 76 161 161 HOH TIP . 
E 3 HOH A 77 162 162 HOH TIP . 
E 3 HOH A 78 165 165 HOH TIP . 
E 3 HOH A 79 167 167 HOH TIP . 
E 3 HOH A 80 168 168 HOH TIP . 
E 3 HOH A 81 169 169 HOH TIP . 
E 3 HOH A 82 170 170 HOH TIP . 
E 3 HOH A 83 171 171 HOH TIP . 
E 3 HOH A 84 172 172 HOH TIP . 
E 3 HOH A 85 174 174 HOH TIP . 
E 3 HOH A 86 177 177 HOH TIP . 
E 3 HOH A 87 179 179 HOH TIP . 
E 3 HOH A 88 181 181 HOH TIP . 
E 3 HOH A 89 183 183 HOH TIP . 
E 3 HOH A 90 184 184 HOH TIP . 
E 3 HOH A 91 185 185 HOH TIP . 
E 3 HOH A 92 187 187 HOH TIP . 
E 3 HOH A 93 188 188 HOH TIP . 
E 3 HOH A 94 189 189 HOH TIP . 
E 3 HOH A 95 191 191 HOH TIP . 
E 3 HOH A 96 199 199 HOH TIP . 
E 3 HOH A 97 201 201 HOH TIP . 
E 3 HOH A 98 315 203 HOH TIP . 
E 3 HOH A 99 316 208 HOH TIP . 
E 3 HOH A 100 317 210 HOH TIP . 
E 3 HOH A 101 318 215 HOH TIP . 
E 3 HOH A 102 319 217 HOH TIP . 
E 3 HOH A 103 320 218 HOH TIP . 
E 3 HOH A 104 321 219 HOH TIP . 
E 3 HOH A 105 322 220 HOH TIP . 
E 3 HOH A 106 323 222 HOH TIP . 
E 3 HOH A 107 325 225 HOH TIP . 
E 3 HOH A 108 326 226 HOH TIP . 
E 3 HOH A 109 327 230 HOH TIP . 
E 3 HOH A 110 328 233 HOH TIP . 
E 3 HOH A 111 329 234 HOH TIP . 
E 3 HOH A 112 330 237 HOH TIP . 
E 3 HOH A 113 331 238 HOH TIP . 
E 3 HOH A 114 332 243 HOH TIP . 
E 3 HOH A 115 333 244 HOH TIP . 
E 3 HOH A 116 334 247 HOH TIP . 
E 3 HOH A 117 335 252 HOH TIP . 
E 3 HOH A 118 336 254 HOH TIP . 
E 3 HOH A 119 337 255 HOH TIP . 
E 3 HOH A 120 338 256 HOH TIP . 
E 3 HOH A 121 340 259 HOH TIP . 
E 3 HOH A 122 341 260 HOH TIP . 
E 3 HOH A 123 342 261 HOH TIP . 
E 3 HOH A 124 343 266 HOH TIP . 
E 3 HOH A 125 344 267 HOH TIP . 
E 3 HOH A 126 345 268 HOH TIP . 
F 3 HOH B 1 6 6 HOH TIP . 
F 3 HOH B 2 9 9 HOH TIP . 
F 3 HOH B 3 10 10 HOH TIP . 
F 3 HOH B 4 11 11 HOH TIP . 
F 3 HOH B 5 12 12 HOH TIP . 
F 3 HOH B 6 17 17 HOH TIP . 
F 3 HOH B 7 20 20 HOH TIP . 
F 3 HOH B 8 22 22 HOH TIP . 
F 3 HOH B 9 23 23 HOH TIP . 
F 3 HOH B 10 27 27 HOH TIP . 
F 3 HOH B 11 28 28 HOH TIP . 
F 3 HOH B 12 33 33 HOH TIP . 
F 3 HOH B 13 34 34 HOH TIP . 
F 3 HOH B 14 37 37 HOH TIP . 
F 3 HOH B 15 39 39 HOH TIP . 
F 3 HOH B 16 41 41 HOH TIP . 
F 3 HOH B 17 42 42 HOH TIP . 
F 3 HOH B 18 45 45 HOH TIP . 
F 3 HOH B 19 48 48 HOH TIP . 
F 3 HOH B 20 56 56 HOH TIP . 
F 3 HOH B 21 57 57 HOH TIP . 
F 3 HOH B 22 58 58 HOH TIP . 
F 3 HOH B 23 60 60 HOH TIP . 
F 3 HOH B 24 61 61 HOH TIP . 
F 3 HOH B 25 62 62 HOH TIP . 
F 3 HOH B 26 63 63 HOH TIP . 
F 3 HOH B 27 64 64 HOH TIP . 
F 3 HOH B 28 65 65 HOH TIP . 
F 3 HOH B 29 67 67 HOH TIP . 
F 3 HOH B 30 75 75 HOH TIP . 
F 3 HOH B 31 77 77 HOH TIP . 
F 3 HOH B 32 78 78 HOH TIP . 
F 3 HOH B 33 86 86 HOH TIP . 
F 3 HOH B 34 88 88 HOH TIP . 
F 3 HOH B 35 90 90 HOH TIP . 
F 3 HOH B 36 91 91 HOH TIP . 
F 3 HOH B 37 94 94 HOH TIP . 
F 3 HOH B 38 99 99 HOH TIP . 
F 3 HOH B 39 100 100 HOH TIP . 
F 3 HOH B 40 105 105 HOH TIP . 
F 3 HOH B 41 106 106 HOH TIP . 
F 3 HOH B 42 107 107 HOH TIP . 
F 3 HOH B 43 109 109 HOH TIP . 
F 3 HOH B 44 112 112 HOH TIP . 
F 3 HOH B 45 117 117 HOH TIP . 
F 3 HOH B 46 119 119 HOH TIP . 
F 3 HOH B 47 121 121 HOH TIP . 
F 3 HOH B 48 122 122 HOH TIP . 
F 3 HOH B 49 128 128 HOH TIP . 
F 3 HOH B 50 130 130 HOH TIP . 
F 3 HOH B 51 133 133 HOH TIP . 
F 3 HOH B 52 134 134 HOH TIP . 
F 3 HOH B 53 143 143 HOH TIP . 
F 3 HOH B 54 144 144 HOH TIP . 
F 3 HOH B 55 147 147 HOH TIP . 
F 3 HOH B 56 148 148 HOH TIP . 
F 3 HOH B 57 150 150 HOH TIP . 
F 3 HOH B 58 151 151 HOH TIP . 
F 3 HOH B 59 153 153 HOH TIP . 
F 3 HOH B 60 156 156 HOH TIP . 
F 3 HOH B 61 159 159 HOH TIP . 
F 3 HOH B 62 160 160 HOH TIP . 
F 3 HOH B 63 163 163 HOH TIP . 
F 3 HOH B 64 164 164 HOH TIP . 
F 3 HOH B 65 166 166 HOH TIP . 
F 3 HOH B 66 175 175 HOH TIP . 
F 3 HOH B 67 176 176 HOH TIP . 
F 3 HOH B 68 178 178 HOH TIP . 
F 3 HOH B 69 180 180 HOH TIP . 
F 3 HOH B 70 182 182 HOH TIP . 
F 3 HOH B 71 186 186 HOH TIP . 
F 3 HOH B 72 192 192 HOH TIP . 
F 3 HOH B 73 193 193 HOH TIP . 
F 3 HOH B 74 194 194 HOH TIP . 
F 3 HOH B 75 195 195 HOH TIP . 
F 3 HOH B 76 196 196 HOH TIP . 
F 3 HOH B 77 197 197 HOH TIP . 
F 3 HOH B 78 198 198 HOH TIP . 
F 3 HOH B 79 200 200 HOH TIP . 
F 3 HOH B 80 202 202 HOH TIP . 
F 3 HOH B 81 204 204 HOH TIP . 
F 3 HOH B 82 205 205 HOH TIP . 
F 3 HOH B 83 206 206 HOH TIP . 
F 3 HOH B 84 315 209 HOH TIP . 
F 3 HOH B 85 316 211 HOH TIP . 
F 3 HOH B 86 317 212 HOH TIP . 
F 3 HOH B 87 318 216 HOH TIP . 
F 3 HOH B 88 319 228 HOH TIP . 
F 3 HOH B 89 320 231 HOH TIP . 
F 3 HOH B 90 321 232 HOH TIP . 
F 3 HOH B 91 322 239 HOH TIP . 
F 3 HOH B 92 323 240 HOH TIP . 
F 3 HOH B 93 324 223 HOH TIP . 
F 3 HOH B 94 325 242 HOH TIP . 
F 3 HOH B 95 326 245 HOH TIP . 
F 3 HOH B 96 327 246 HOH TIP . 
F 3 HOH B 97 328 248 HOH TIP . 
F 3 HOH B 98 329 249 HOH TIP . 
F 3 HOH B 99 330 250 HOH TIP . 
F 3 HOH B 100 331 251 HOH TIP . 
F 3 HOH B 101 332 253 HOH TIP . 
F 3 HOH B 102 333 258 HOH TIP . 
F 3 HOH B 103 334 262 HOH TIP . 
F 3 HOH B 104 335 263 HOH TIP . 
F 3 HOH B 105 336 265 HOH TIP . 
F 3 HOH B 106 337 269 HOH TIP . 
F 3 HOH B 107 338 270 HOH TIP . 
F 3 HOH B 108 339 257 HOH TIP . 
F 3 HOH B 109 340 272 HOH TIP . 
F 3 HOH B 110 341 241 HOH TIP . 
F 3 HOH B 111 342 271 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . D 2 28.97 -8.97 3.52 1 38.13 ? S SO4 601 A 1 
HETATM 2 O O1 SO4 . . . D 2 29.039 -10.423 3.77 1 35.21 ? O1 SO4 601 A 1 
HETATM 3 O O2 SO4 . . . D 2 28.298 -8.737 2.221 1 35.38 ? O2 SO4 601 A 1 
HETATM 4 O O3 SO4 . . . D 2 28.213 -8.337 4.613 1 33.31 ? O3 SO4 601 A 1 
HETATM 5 O O4 SO4 . . . D 2 30.331 -8.395 3.462 1 34.82 ? O4 SO4 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#