data_3GQI # _model_server_result.job_id yOmjEz34E5q2kNKw55sx9w _model_server_result.datetime_utc '2024-12-21 02:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3GQI # _exptl.entry_id 3GQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 957.398 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECAVANADATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.5 _cell.angle_gamma 90 _cell.entry_id 3GQI _cell.length_a 133.935 _cell.length_b 64.596 _cell.length_c 94.209 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 204 A ASP 652 1_555 A N PTR 205 A PTR 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C PTR 205 A PTR 653 1_555 A N PTR 206 A PTR 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C PTR 206 A PTR 654 1_555 A N LYS 207 A LYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C GLU 317 A GLU 765 1_555 A N PTR 318 A PTR 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C PTR 318 A PTR 766 1_555 A N LEU 319 A LEU 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O28 V10 -6' _chem_comp.formula_weight 957.398 _chem_comp.id DVT _chem_comp.mon_nstd_flag . _chem_comp.name DECAVANADATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 V10 DVT doub 134 n n V10 O18 DVT sing 135 n n V10 O15 DVT sing 136 n n V10 O27 DVT sing 137 n n V10 O2 DVT sing 138 n n V10 O23 DVT sing 139 n n O18 V3 DVT sing 140 n n O15 V1 DVT sing 141 n n V1 O5 DVT doub 142 n n V1 O2 DVT sing 143 n n V1 O4 DVT sing 144 n n V1 O1 DVT sing 145 n n V1 O3 DVT sing 146 n n O27 V9 DVT sing 147 n n V9 O2 DVT sing 148 n n V9 O4 DVT sing 149 n n V9 O8 DVT sing 150 n n V9 O26 DVT doub 151 n n V9 O24 DVT sing 152 n n O2 V8 DVT sing 153 n n O2 V2 DVT sing 154 n n O2 V3 DVT sing 155 n n O8 V7 DVT sing 156 n n O8 V2 DVT sing 157 n n O24 V7 DVT sing 158 n n O24 V8 DVT sing 159 n n V7 O11 DVT sing 160 n n V7 O25 DVT doub 161 n n V7 O21 DVT sing 162 n n V7 O16 DVT sing 163 n n O11 V5 DVT sing 164 n n O21 V6 DVT sing 165 n n V6 O19 DVT sing 166 n n V6 O22 DVT doub 167 n n V6 O6 DVT sing 168 n n V6 O20 DVT sing 169 n n V6 O16 DVT sing 170 n n O19 V4 DVT sing 171 n n O6 V5 DVT sing 172 n n V8 O20 DVT sing 173 n n V8 O23 DVT sing 174 n n V8 O16 DVT sing 175 n n V8 O17 DVT sing 176 n n O7 V5 DVT sing 177 n n O7 V2 DVT sing 178 n n V5 O14 DVT doub 179 n n V5 O16 DVT sing 180 n n V5 O13 DVT sing 181 n n O16 V2 DVT sing 182 n n O16 V4 DVT sing 183 n n V2 O1 DVT sing 184 n n V2 O9 DVT sing 185 n n O17 V4 DVT sing 186 n n O17 V3 DVT sing 187 n n V4 O13 DVT sing 188 n n V4 O12 DVT doub 189 n n V4 O9 DVT sing 190 n n O9 V3 DVT sing 191 n n V3 O3 DVT sing 192 n n V3 O10 DVT doub 193 n n # _atom_sites.entry_id 3GQI _atom_sites.fract_transf_matrix[1][1] 0.007466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DVT A 1 1 1 DVT DVT . D 4 ACP A 1 775 1 ACP ACP . E 5 MG A 1 776 1 MG MG . F 6 HOH A 1 4 4 HOH HOH . F 6 HOH A 2 5 5 HOH HOH . F 6 HOH A 3 6 6 HOH HOH . F 6 HOH A 4 7 7 HOH HOH . F 6 HOH A 5 8 8 HOH HOH . F 6 HOH A 6 9 9 HOH HOH . F 6 HOH A 7 10 10 HOH HOH . F 6 HOH A 8 12 12 HOH HOH . F 6 HOH A 9 13 13 HOH HOH . F 6 HOH A 10 14 14 HOH HOH . F 6 HOH A 11 16 16 HOH HOH . F 6 HOH A 12 17 17 HOH HOH . F 6 HOH A 13 19 19 HOH HOH . F 6 HOH A 14 22 22 HOH HOH . F 6 HOH A 15 23 23 HOH HOH . F 6 HOH A 16 24 24 HOH HOH . F 6 HOH A 17 28 28 HOH HOH . F 6 HOH A 18 31 31 HOH HOH . F 6 HOH A 19 32 32 HOH HOH . F 6 HOH A 20 33 33 HOH HOH . F 6 HOH A 21 35 35 HOH HOH . F 6 HOH A 22 36 36 HOH HOH . F 6 HOH A 23 37 37 HOH HOH . F 6 HOH A 24 39 39 HOH HOH . F 6 HOH A 25 40 40 HOH HOH . F 6 HOH A 26 41 41 HOH HOH . F 6 HOH A 27 42 42 HOH HOH . F 6 HOH A 28 44 44 HOH HOH . F 6 HOH A 29 45 45 HOH HOH . F 6 HOH A 30 46 46 HOH HOH . F 6 HOH A 31 47 47 HOH HOH . F 6 HOH A 32 48 48 HOH HOH . F 6 HOH A 33 49 49 HOH HOH . F 6 HOH A 34 50 50 HOH HOH . F 6 HOH A 35 51 51 HOH HOH . F 6 HOH A 36 52 52 HOH HOH . F 6 HOH A 37 53 53 HOH HOH . F 6 HOH A 38 54 54 HOH HOH . F 6 HOH A 39 55 55 HOH HOH . F 6 HOH A 40 59 59 HOH HOH . F 6 HOH A 41 60 60 HOH HOH . F 6 HOH A 42 61 61 HOH HOH . F 6 HOH A 43 63 63 HOH HOH . F 6 HOH A 44 65 65 HOH HOH . F 6 HOH A 45 66 66 HOH HOH . F 6 HOH A 46 67 67 HOH HOH . F 6 HOH A 47 69 69 HOH HOH . F 6 HOH A 48 70 70 HOH HOH . F 6 HOH A 49 71 71 HOH HOH . F 6 HOH A 50 73 73 HOH HOH . F 6 HOH A 51 74 74 HOH HOH . F 6 HOH A 52 76 76 HOH HOH . F 6 HOH A 53 77 77 HOH HOH . F 6 HOH A 54 78 78 HOH HOH . F 6 HOH A 55 777 1 HOH HOH . G 6 HOH B 1 2 2 HOH HOH . G 6 HOH B 2 11 11 HOH HOH . G 6 HOH B 3 15 15 HOH HOH . G 6 HOH B 4 18 18 HOH HOH . G 6 HOH B 5 20 20 HOH HOH . G 6 HOH B 6 21 21 HOH HOH . G 6 HOH B 7 25 25 HOH HOH . G 6 HOH B 8 26 26 HOH HOH . G 6 HOH B 9 27 27 HOH HOH . G 6 HOH B 10 29 29 HOH HOH . G 6 HOH B 11 30 30 HOH HOH . G 6 HOH B 12 34 34 HOH HOH . G 6 HOH B 13 38 38 HOH HOH . G 6 HOH B 14 43 43 HOH HOH . G 6 HOH B 15 56 56 HOH HOH . G 6 HOH B 16 57 57 HOH HOH . G 6 HOH B 17 58 58 HOH HOH . G 6 HOH B 18 62 62 HOH HOH . G 6 HOH B 19 64 64 HOH HOH . G 6 HOH B 20 68 68 HOH HOH . G 6 HOH B 21 72 72 HOH HOH . G 6 HOH B 22 75 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O28 DVT . . . C 3 -34.823 33.597 4.26 1 81.21 ? O28 DVT 1 A 1 HETATM 2 V V10 DVT . . . C 3 -33.272 34.089 4.184 1 83.36 ? V10 DVT 1 A 1 HETATM 3 O O18 DVT . . . C 3 -32.362 32.393 4.253 1 83.08 ? O18 DVT 1 A 1 HETATM 4 O O15 DVT . . . C 3 -32.85 34.473 2.447 1 82.88 ? O15 DVT 1 A 1 HETATM 5 V V1 DVT . . . C 3 -31.105 35.09 2.141 1 83.93 ? V1 DVT 1 A 1 HETATM 6 O O5 DVT . . . C 3 -30.986 35.355 0.576 1 83.77 ? O5 DVT 1 A 1 HETATM 7 O O27 DVT . . . C 3 -33.403 35.916 4.741 1 82.34 ? O27 DVT 1 A 1 HETATM 8 V V9 DVT . . . C 3 -31.805 36.885 4.635 1 83.74 ? V9 DVT 1 A 1 HETATM 9 O O2 DVT . . . C 3 -31.119 34.796 4.444 1 85.04 ? O2 DVT 1 A 1 HETATM 10 O O4 DVT . . . C 3 -31.397 36.878 2.872 1 83.4 ? O4 DVT 1 A 1 HETATM 11 O O8 DVT . . . C 3 -29.815 37.149 4.794 1 83.68 ? O8 DVT 1 A 1 HETATM 12 O O26 DVT . . . C 3 -32.233 38.426 4.851 1 82.39 ? O26 DVT 1 A 1 HETATM 13 O O24 DVT . . . C 3 -31.608 36.329 6.582 1 83.03 ? O24 DVT 1 A 1 HETATM 14 V V7 DVT . . . C 3 -29.787 37.265 6.902 1 85.5 ? V7 DVT 1 A 1 HETATM 15 O O11 DVT . . . C 3 -27.988 37.527 6.765 1 84.3 ? O11 DVT 1 A 1 HETATM 16 O O25 DVT . . . C 3 -30.304 38.774 7.042 1 84.09 ? O25 DVT 1 A 1 HETATM 17 O O21 DVT . . . C 3 -30.019 36.58 8.583 1 84.03 ? O21 DVT 1 A 1 HETATM 18 V V6 DVT . . . C 3 -29.241 34.856 8.792 1 84.47 ? V6 DVT 1 A 1 HETATM 19 O O19 DVT . . . C 3 -28.946 33.061 8.17 1 84.71 ? O19 DVT 1 A 1 HETATM 20 O O22 DVT . . . C 3 -29.409 34.637 10.362 1 84.97 ? O22 DVT 1 A 1 HETATM 21 O O6 DVT . . . C 3 -27.478 35.456 8.535 1 84.33 ? O6 DVT 1 A 1 HETATM 22 V V8 DVT . . . C 3 -31.213 34.474 6.445 1 83.58 ? V8 DVT 1 A 1 HETATM 23 O O20 DVT . . . C 3 -31.122 34.304 8.149 1 83.84 ? O20 DVT 1 A 1 HETATM 24 O O23 DVT . . . C 3 -32.839 33.963 6.204 1 83.24 ? O23 DVT 1 A 1 HETATM 25 O O16 DVT . . . C 3 -29.287 35.101 6.469 1 84.23 ? O16 DVT 1 A 1 HETATM 26 V V5 DVT . . . C 3 -27.208 35.753 6.726 1 83.89 ? V5 DVT 1 A 1 HETATM 27 O O14 DVT . . . C 3 -25.65 36.197 6.695 1 84.28 ? O14 DVT 1 A 1 HETATM 28 O O7 DVT . . . C 3 -27.571 35.864 4.722 1 84.35 ? O7 DVT 1 A 1 HETATM 29 V V2 DVT . . . C 3 -29.138 35.403 4.503 1 81.45 ? V2 DVT 1 A 1 HETATM 30 O O1 DVT . . . C 3 -29.26 35.604 2.788 1 83.85 ? O1 DVT 1 A 1 HETATM 31 O O17 DVT . . . C 3 -30.519 32.71 6.02 1 84.55 ? O17 DVT 1 A 1 HETATM 32 V V4 DVT . . . C 3 -28.586 32.978 6.304 1 82.56 ? V4 DVT 1 A 1 HETATM 33 O O13 DVT . . . C 3 -27.014 33.923 6.139 1 84.56 ? O13 DVT 1 A 1 HETATM 34 O O12 DVT . . . C 3 -28.184 31.415 6.031 1 84.81 ? O12 DVT 1 A 1 HETATM 35 O O9 DVT . . . C 3 -28.796 33.526 4.384 1 84.47 ? O9 DVT 1 A 1 HETATM 36 V V3 DVT . . . C 3 -30.525 32.634 4.048 1 83.36 ? V3 DVT 1 A 1 HETATM 37 O O3 DVT . . . C 3 -30.33 33.33 2.375 1 83.58 ? O3 DVT 1 A 1 HETATM 38 O O10 DVT . . . C 3 -30 31.113 3.913 1 85.04 ? O10 DVT 1 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 494 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 38 #