data_3GQI # _model_server_result.job_id K3ukeMjW5eaRUhYB1jUxCw _model_server_result.datetime_utc '2024-10-11 01:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":776}' # _entry.id 3GQI # _exptl.entry_id 3GQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.5 _cell.angle_gamma 90 _cell.entry_id 3GQI _cell.length_a 133.935 _cell.length_b 64.596 _cell.length_c 94.209 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 204 A ASP 652 1_555 A N PTR 205 A PTR 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C PTR 205 A PTR 653 1_555 A N PTR 206 A PTR 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C PTR 206 A PTR 654 1_555 A N LYS 207 A LYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C GLU 317 A GLU 765 1_555 A N PTR 318 A PTR 766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C PTR 318 A PTR 766 1_555 A N LEU 319 A LEU 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GQI _atom_sites.fract_transf_matrix[1][1] 0.007466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DVT A 1 1 1 DVT DVT . D 4 ACP A 1 775 1 ACP ACP . E 5 MG A 1 776 1 MG MG . F 6 HOH A 1 4 4 HOH HOH . F 6 HOH A 2 5 5 HOH HOH . F 6 HOH A 3 6 6 HOH HOH . F 6 HOH A 4 7 7 HOH HOH . F 6 HOH A 5 8 8 HOH HOH . F 6 HOH A 6 9 9 HOH HOH . F 6 HOH A 7 10 10 HOH HOH . F 6 HOH A 8 12 12 HOH HOH . F 6 HOH A 9 13 13 HOH HOH . F 6 HOH A 10 14 14 HOH HOH . F 6 HOH A 11 16 16 HOH HOH . F 6 HOH A 12 17 17 HOH HOH . F 6 HOH A 13 19 19 HOH HOH . F 6 HOH A 14 22 22 HOH HOH . F 6 HOH A 15 23 23 HOH HOH . F 6 HOH A 16 24 24 HOH HOH . F 6 HOH A 17 28 28 HOH HOH . F 6 HOH A 18 31 31 HOH HOH . F 6 HOH A 19 32 32 HOH HOH . F 6 HOH A 20 33 33 HOH HOH . F 6 HOH A 21 35 35 HOH HOH . F 6 HOH A 22 36 36 HOH HOH . F 6 HOH A 23 37 37 HOH HOH . F 6 HOH A 24 39 39 HOH HOH . F 6 HOH A 25 40 40 HOH HOH . F 6 HOH A 26 41 41 HOH HOH . F 6 HOH A 27 42 42 HOH HOH . F 6 HOH A 28 44 44 HOH HOH . F 6 HOH A 29 45 45 HOH HOH . F 6 HOH A 30 46 46 HOH HOH . F 6 HOH A 31 47 47 HOH HOH . F 6 HOH A 32 48 48 HOH HOH . F 6 HOH A 33 49 49 HOH HOH . F 6 HOH A 34 50 50 HOH HOH . F 6 HOH A 35 51 51 HOH HOH . F 6 HOH A 36 52 52 HOH HOH . F 6 HOH A 37 53 53 HOH HOH . F 6 HOH A 38 54 54 HOH HOH . F 6 HOH A 39 55 55 HOH HOH . F 6 HOH A 40 59 59 HOH HOH . F 6 HOH A 41 60 60 HOH HOH . F 6 HOH A 42 61 61 HOH HOH . F 6 HOH A 43 63 63 HOH HOH . F 6 HOH A 44 65 65 HOH HOH . F 6 HOH A 45 66 66 HOH HOH . F 6 HOH A 46 67 67 HOH HOH . F 6 HOH A 47 69 69 HOH HOH . F 6 HOH A 48 70 70 HOH HOH . F 6 HOH A 49 71 71 HOH HOH . F 6 HOH A 50 73 73 HOH HOH . F 6 HOH A 51 74 74 HOH HOH . F 6 HOH A 52 76 76 HOH HOH . F 6 HOH A 53 77 77 HOH HOH . F 6 HOH A 54 78 78 HOH HOH . F 6 HOH A 55 777 1 HOH HOH . G 6 HOH B 1 2 2 HOH HOH . G 6 HOH B 2 11 11 HOH HOH . G 6 HOH B 3 15 15 HOH HOH . G 6 HOH B 4 18 18 HOH HOH . G 6 HOH B 5 20 20 HOH HOH . G 6 HOH B 6 21 21 HOH HOH . G 6 HOH B 7 25 25 HOH HOH . G 6 HOH B 8 26 26 HOH HOH . G 6 HOH B 9 27 27 HOH HOH . G 6 HOH B 10 29 29 HOH HOH . G 6 HOH B 11 30 30 HOH HOH . G 6 HOH B 12 34 34 HOH HOH . G 6 HOH B 13 38 38 HOH HOH . G 6 HOH B 14 43 43 HOH HOH . G 6 HOH B 15 56 56 HOH HOH . G 6 HOH B 16 57 57 HOH HOH . G 6 HOH B 17 58 58 HOH HOH . G 6 HOH B 18 62 62 HOH HOH . G 6 HOH B 19 64 64 HOH HOH . G 6 HOH B 20 68 68 HOH HOH . G 6 HOH B 21 72 72 HOH HOH . G 6 HOH B 22 75 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -32.285 _atom_site.Cartn_y 29.67 _atom_site.Cartn_z 43.031 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 776 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #