data_3GQO
#
_model_server_result.job_id            hR0w0GeVtSMUqCgxz9qU6A 
_model_server_result.datetime_utc      '2024-11-07 16:16:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gqo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":167}' 
#
_entry.id    3GQO 
#
_exptl.entry_id    3GQO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GQO 
_cell.length_a            74 
_cell.length_b            87.2 
_cell.length_c            105 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GQO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     3GQO 
_atom_sites.fract_transf_matrix[1][1]    0.013514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 APR A 1 167 161 APR APR . 
F 2 APR B 1 167 161 APR APR . 
G 2 APR C 1 167 161 APR APR . 
H 2 APR D 1 167 161 APR APR . 
I 3 HOH A 1 168 168 HOH HOH . 
I 3 HOH A 2 169 164 HOH HOH . 
I 3 HOH A 3 170 170 HOH HOH . 
I 3 HOH A 4 171 165 HOH HOH . 
I 3 HOH A 5 180 180 HOH HOH . 
I 3 HOH A 6 181 181 HOH HOH . 
I 3 HOH A 7 182 182 HOH HOH . 
I 3 HOH A 8 184 184 HOH HOH . 
I 3 HOH A 9 188 188 HOH HOH . 
I 3 HOH A 10 189 189 HOH HOH . 
I 3 HOH A 11 199 199 HOH HOH . 
I 3 HOH A 12 212 212 HOH HOH . 
I 3 HOH A 13 216 216 HOH HOH . 
I 3 HOH A 14 217 217 HOH HOH . 
I 3 HOH A 15 220 220 HOH HOH . 
I 3 HOH A 16 225 225 HOH HOH . 
I 3 HOH A 17 226 226 HOH HOH . 
I 3 HOH A 18 227 227 HOH HOH . 
I 3 HOH A 19 230 230 HOH HOH . 
I 3 HOH A 20 236 236 HOH HOH . 
I 3 HOH A 21 246 246 HOH HOH . 
I 3 HOH A 22 247 247 HOH HOH . 
I 3 HOH A 23 249 249 HOH HOH . 
I 3 HOH A 24 250 250 HOH HOH . 
I 3 HOH A 25 252 252 HOH HOH . 
I 3 HOH A 26 255 255 HOH HOH . 
I 3 HOH A 27 266 266 HOH HOH . 
I 3 HOH A 28 275 275 HOH HOH . 
I 3 HOH A 29 276 276 HOH HOH . 
I 3 HOH A 30 277 277 HOH HOH . 
I 3 HOH A 31 278 278 HOH HOH . 
I 3 HOH A 32 279 279 HOH HOH . 
I 3 HOH A 33 281 281 HOH HOH . 
I 3 HOH A 34 284 284 HOH HOH . 
J 3 HOH B 1 168 162 HOH HOH . 
J 3 HOH B 2 169 166 HOH HOH . 
J 3 HOH B 3 171 171 HOH HOH . 
J 3 HOH B 4 173 173 HOH HOH . 
J 3 HOH B 5 178 178 HOH HOH . 
J 3 HOH B 6 179 179 HOH HOH . 
J 3 HOH B 7 185 185 HOH HOH . 
J 3 HOH B 8 186 186 HOH HOH . 
J 3 HOH B 9 190 190 HOH HOH . 
J 3 HOH B 10 191 191 HOH HOH . 
J 3 HOH B 11 193 193 HOH HOH . 
J 3 HOH B 12 201 201 HOH HOH . 
J 3 HOH B 13 205 205 HOH HOH . 
J 3 HOH B 14 206 206 HOH HOH . 
J 3 HOH B 15 207 207 HOH HOH . 
J 3 HOH B 16 210 210 HOH HOH . 
J 3 HOH B 17 211 211 HOH HOH . 
J 3 HOH B 18 214 214 HOH HOH . 
J 3 HOH B 19 218 218 HOH HOH . 
J 3 HOH B 20 223 223 HOH HOH . 
J 3 HOH B 21 224 224 HOH HOH . 
J 3 HOH B 22 229 229 HOH HOH . 
J 3 HOH B 23 231 231 HOH HOH . 
J 3 HOH B 24 233 233 HOH HOH . 
J 3 HOH B 25 234 234 HOH HOH . 
J 3 HOH B 26 237 237 HOH HOH . 
J 3 HOH B 27 253 253 HOH HOH . 
J 3 HOH B 28 254 254 HOH HOH . 
J 3 HOH B 29 261 261 HOH HOH . 
J 3 HOH B 30 262 262 HOH HOH . 
J 3 HOH B 31 264 264 HOH HOH . 
J 3 HOH B 32 265 265 HOH HOH . 
J 3 HOH B 33 267 267 HOH HOH . 
J 3 HOH B 34 270 270 HOH HOH . 
J 3 HOH B 35 271 271 HOH HOH . 
J 3 HOH B 36 272 272 HOH HOH . 
J 3 HOH B 37 273 273 HOH HOH . 
J 3 HOH B 38 274 274 HOH HOH . 
J 3 HOH B 39 283 283 HOH HOH . 
J 3 HOH B 40 289 289 HOH HOH . 
J 3 HOH B 41 290 290 HOH HOH . 
J 3 HOH B 42 291 291 HOH HOH . 
J 3 HOH B 43 292 292 HOH HOH . 
J 3 HOH B 44 293 293 HOH HOH . 
J 3 HOH B 45 294 294 HOH HOH . 
J 3 HOH B 46 295 295 HOH HOH . 
K 3 HOH C 1 168 167 HOH HOH . 
K 3 HOH C 2 172 172 HOH HOH . 
K 3 HOH C 3 176 176 HOH HOH . 
K 3 HOH C 4 177 177 HOH HOH . 
K 3 HOH C 5 183 183 HOH HOH . 
K 3 HOH C 6 195 195 HOH HOH . 
K 3 HOH C 7 198 198 HOH HOH . 
K 3 HOH C 8 202 202 HOH HOH . 
K 3 HOH C 9 204 204 HOH HOH . 
K 3 HOH C 10 221 221 HOH HOH . 
K 3 HOH C 11 222 222 HOH HOH . 
K 3 HOH C 12 239 239 HOH HOH . 
K 3 HOH C 13 241 241 HOH HOH . 
K 3 HOH C 14 243 243 HOH HOH . 
K 3 HOH C 15 244 244 HOH HOH . 
K 3 HOH C 16 245 245 HOH HOH . 
K 3 HOH C 17 248 248 HOH HOH . 
K 3 HOH C 18 256 256 HOH HOH . 
K 3 HOH C 19 258 258 HOH HOH . 
K 3 HOH C 20 260 260 HOH HOH . 
K 3 HOH C 21 263 263 HOH HOH . 
K 3 HOH C 22 268 268 HOH HOH . 
K 3 HOH C 23 269 269 HOH HOH . 
K 3 HOH C 24 285 285 HOH HOH . 
K 3 HOH C 25 286 286 HOH HOH . 
K 3 HOH C 26 287 287 HOH HOH . 
L 3 HOH D 1 168 163 HOH HOH . 
L 3 HOH D 2 169 169 HOH HOH . 
L 3 HOH D 3 174 174 HOH HOH . 
L 3 HOH D 4 175 175 HOH HOH . 
L 3 HOH D 5 187 187 HOH HOH . 
L 3 HOH D 6 192 192 HOH HOH . 
L 3 HOH D 7 194 194 HOH HOH . 
L 3 HOH D 8 196 196 HOH HOH . 
L 3 HOH D 9 197 197 HOH HOH . 
L 3 HOH D 10 200 200 HOH HOH . 
L 3 HOH D 11 203 203 HOH HOH . 
L 3 HOH D 12 208 208 HOH HOH . 
L 3 HOH D 13 209 209 HOH HOH . 
L 3 HOH D 14 213 213 HOH HOH . 
L 3 HOH D 15 215 215 HOH HOH . 
L 3 HOH D 16 219 219 HOH HOH . 
L 3 HOH D 17 228 228 HOH HOH . 
L 3 HOH D 18 232 232 HOH HOH . 
L 3 HOH D 19 235 235 HOH HOH . 
L 3 HOH D 20 238 238 HOH HOH . 
L 3 HOH D 21 240 240 HOH HOH . 
L 3 HOH D 22 242 242 HOH HOH . 
L 3 HOH D 23 251 251 HOH HOH . 
L 3 HOH D 24 257 257 HOH HOH . 
L 3 HOH D 25 259 259 HOH HOH . 
L 3 HOH D 26 280 280 HOH HOH . 
L 3 HOH D 27 282 282 HOH HOH . 
L 3 HOH D 28 288 288 HOH HOH . 
L 3 HOH D 29 296 296 HOH HOH . 
L 3 HOH D 30 297 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . F 2 -45.317 -3.895 12.609 1 23.52 ? N1 APR 167 B 1 
HETATM 2 C C2 APR . . . F 2 -44.206 -4.615 12.378 1 23.46 ? C2 APR 167 B 1 
HETATM 3 N N3 APR . . . F 2 -44.183 -5.682 11.558 1 24.68 ? N3 APR 167 B 1 
HETATM 4 C C4 APR . . . F 2 -45.311 -6.079 10.907 1 25.17 ? C4 APR 167 B 1 
HETATM 5 C C5 APR . . . F 2 -46.559 -5.337 11.096 1 24.15 ? C5 APR 167 B 1 
HETATM 6 C C6 APR . . . F 2 -46.507 -4.181 12.018 1 22.91 ? C6 APR 167 B 1 
HETATM 7 N N6 APR . . . F 2 -47.62 -3.45 12.247 1 20.29 ? N6 APR 167 B 1 
HETATM 8 N N7 APR . . . F 2 -47.491 -5.941 10.33 1 24.84 ? N7 APR 167 B 1 
HETATM 9 C C8 APR . . . F 2 -46.903 -6.983 9.701 1 24.58 ? C8 APR 167 B 1 
HETATM 10 N N9 APR . . . F 2 -45.61 -7.063 10.059 1 25.29 ? N9 APR 167 B 1 
HETATM 11 C C1' APR . . . F 2 -44.592 -8.012 9.582 1 24.43 ? C1' APR 167 B 1 
HETATM 12 C C2' APR . . . F 2 -45.132 -9.304 8.996 1 23.67 ? C2' APR 167 B 1 
HETATM 13 O O2' APR . . . F 2 -45.109 -10.331 9.987 1 22.33 ? O2' APR 167 B 1 
HETATM 14 C C3' APR . . . F 2 -44.13 -9.565 7.891 1 23.74 ? C3' APR 167 B 1 
HETATM 15 O O3' APR . . . F 2 -43.014 -10.295 8.438 1 21.52 ? O3' APR 167 B 1 
HETATM 16 O O4' APR . . . F 2 -43.932 -7.308 8.525 1 23.43 ? O4' APR 167 B 1 
HETATM 17 C C4' APR . . . F 2 -43.672 -8.171 7.429 1 22.56 ? C4' APR 167 B 1 
HETATM 18 C C5' APR . . . F 2 -44.36 -7.582 6.195 1 20.57 ? C5' APR 167 B 1 
HETATM 19 O O5' APR . . . F 2 -45.64 -8.19 5.993 1 20.25 ? O5' APR 167 B 1 
HETATM 20 P PA APR . . . F 2 -46.925 -7.445 5.357 1 16.3 ? PA APR 167 B 1 
HETATM 21 O O1A APR . . . F 2 -47.221 -6.208 6.146 1 18.15 ? O1A APR 167 B 1 
HETATM 22 O O2A APR . . . F 2 -47.999 -8.488 5.231 1 15.78 ? O2A APR 167 B 1 
HETATM 23 O O3A APR . . . F 2 -46.388 -6.901 3.938 1 16.61 ? O3A APR 167 B 1 
HETATM 24 P PB APR . . . F 2 -46.073 -7.832 2.67 1 17.31 ? PB APR 167 B 1 
HETATM 25 O O1B APR . . . F 2 -44.952 -7.142 1.953 1 17.41 ? O1B APR 167 B 1 
HETATM 26 O O2B APR . . . F 2 -45.977 -9.274 3.067 1 16.47 ? O2B APR 167 B 1 
HETATM 27 O O5D APR . . . F 2 -47.419 -7.702 1.811 1 17.98 ? O5D APR 167 B 1 
HETATM 28 C C5D APR . . . F 2 -47.829 -6.45 1.289 1 19.09 ? C5D APR 167 B 1 
HETATM 29 O O4D APR . . . F 2 -49.895 -6.488 2.515 1 21.39 ? O4D APR 167 B 1 
HETATM 30 O O1D APR . . . F 2 -51.533 -5.266 3.674 1 25.07 ? O1D APR 167 B 1 
HETATM 31 C C1D APR . . . F 2 -51.039 -5.649 2.413 1 22.07 ? C1D APR 167 B 1 
HETATM 32 O O2D APR . . . F 2 -51.414 -3.527 1.225 1 22.57 ? O2D APR 167 B 1 
HETATM 33 C C2D APR . . . F 2 -50.455 -4.497 1.623 1 21.38 ? C2D APR 167 B 1 
HETATM 34 O O3D APR . . . F 2 -51.068 -5.773 -0.252 1 19.35 ? O3D APR 167 B 1 
HETATM 35 C C3D APR . . . F 2 -49.926 -5.303 0.468 1 19.87 ? C3D APR 167 B 1 
HETATM 36 C C4D APR . . . F 2 -49.334 -6.503 1.192 1 19.91 ? C4D APR 167 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           36 
#