data_3GQV
#
_model_server_result.job_id            kEgU39-xOOkEma8sLVgY6Q 
_model_server_result.datetime_utc      '2025-03-04 16:25:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":373}' 
#
_entry.id    3GQV 
#
_exptl.entry_id    3GQV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.96 
_cell.angle_gamma         90 
_cell.entry_id            3GQV 
_cell.length_a            42.542 
_cell.length_b            44.495 
_cell.length_c            93.001 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GQV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3GQV 
_atom_sites.fract_transf_matrix[1][1]    0.023506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004981 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010991 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 372 1 NAP NAP . 
C 3 GOL A 1 410 410 GOL GOL . 
D 3 GOL A 1 373 410 GOL GOL . 
E 4 HOH A 1 374 1 HOH HOH . 
E 4 HOH A 2 375 2 HOH HOH . 
E 4 HOH A 3 376 3 HOH HOH . 
E 4 HOH A 4 377 4 HOH HOH . 
E 4 HOH A 5 378 5 HOH HOH . 
E 4 HOH A 6 379 6 HOH HOH . 
E 4 HOH A 7 380 7 HOH HOH . 
E 4 HOH A 8 381 8 HOH HOH . 
E 4 HOH A 9 382 9 HOH HOH . 
E 4 HOH A 10 383 10 HOH HOH . 
E 4 HOH A 11 384 11 HOH HOH . 
E 4 HOH A 12 385 12 HOH HOH . 
E 4 HOH A 13 386 13 HOH HOH . 
E 4 HOH A 14 387 14 HOH HOH . 
E 4 HOH A 15 388 15 HOH HOH . 
E 4 HOH A 16 389 16 HOH HOH . 
E 4 HOH A 17 390 17 HOH HOH . 
E 4 HOH A 18 391 18 HOH HOH . 
E 4 HOH A 19 392 19 HOH HOH . 
E 4 HOH A 20 393 20 HOH HOH . 
E 4 HOH A 21 394 21 HOH HOH . 
E 4 HOH A 22 395 22 HOH HOH . 
E 4 HOH A 23 396 23 HOH HOH . 
E 4 HOH A 24 397 24 HOH HOH . 
E 4 HOH A 25 398 25 HOH HOH . 
E 4 HOH A 26 399 26 HOH HOH . 
E 4 HOH A 27 400 27 HOH HOH . 
E 4 HOH A 28 401 28 HOH HOH . 
E 4 HOH A 29 402 29 HOH HOH . 
E 4 HOH A 30 403 30 HOH HOH . 
E 4 HOH A 31 404 31 HOH HOH . 
E 4 HOH A 32 405 32 HOH HOH . 
E 4 HOH A 33 406 34 HOH HOH . 
E 4 HOH A 34 407 35 HOH HOH . 
E 4 HOH A 35 408 36 HOH HOH . 
E 4 HOH A 36 409 37 HOH HOH . 
E 4 HOH A 37 411 38 HOH HOH . 
E 4 HOH A 38 412 39 HOH HOH . 
E 4 HOH A 39 413 40 HOH HOH . 
E 4 HOH A 40 414 41 HOH HOH . 
E 4 HOH A 41 415 42 HOH HOH . 
E 4 HOH A 42 416 43 HOH HOH . 
E 4 HOH A 43 417 44 HOH HOH . 
E 4 HOH A 44 418 45 HOH HOH . 
E 4 HOH A 45 419 46 HOH HOH . 
E 4 HOH A 46 420 47 HOH HOH . 
E 4 HOH A 47 421 48 HOH HOH . 
E 4 HOH A 48 422 49 HOH HOH . 
E 4 HOH A 49 423 50 HOH HOH . 
E 4 HOH A 50 424 53 HOH HOH . 
E 4 HOH A 51 425 54 HOH HOH . 
E 4 HOH A 52 426 55 HOH HOH . 
E 4 HOH A 53 427 57 HOH HOH . 
E 4 HOH A 54 428 58 HOH HOH . 
E 4 HOH A 55 429 59 HOH HOH . 
E 4 HOH A 56 430 61 HOH HOH . 
E 4 HOH A 57 431 62 HOH HOH . 
E 4 HOH A 58 432 63 HOH HOH . 
E 4 HOH A 59 433 65 HOH HOH . 
E 4 HOH A 60 434 67 HOH HOH . 
E 4 HOH A 61 435 69 HOH HOH . 
E 4 HOH A 62 436 72 HOH HOH . 
E 4 HOH A 63 437 76 HOH HOH . 
E 4 HOH A 64 438 78 HOH HOH . 
E 4 HOH A 65 439 79 HOH HOH . 
E 4 HOH A 66 440 80 HOH HOH . 
E 4 HOH A 67 441 81 HOH HOH . 
E 4 HOH A 68 442 82 HOH HOH . 
E 4 HOH A 69 443 83 HOH HOH . 
E 4 HOH A 70 444 84 HOH HOH . 
E 4 HOH A 71 445 85 HOH HOH . 
E 4 HOH A 72 446 86 HOH HOH . 
E 4 HOH A 73 447 87 HOH HOH . 
E 4 HOH A 74 448 88 HOH HOH . 
E 4 HOH A 75 449 89 HOH HOH . 
E 4 HOH A 76 450 90 HOH HOH . 
E 4 HOH A 77 451 91 HOH HOH . 
E 4 HOH A 78 452 92 HOH HOH . 
E 4 HOH A 79 453 93 HOH HOH . 
E 4 HOH A 80 454 94 HOH HOH . 
E 4 HOH A 81 455 95 HOH HOH . 
E 4 HOH A 82 456 96 HOH HOH . 
E 4 HOH A 83 457 97 HOH HOH . 
E 4 HOH A 84 458 98 HOH HOH . 
E 4 HOH A 85 459 99 HOH HOH . 
E 4 HOH A 86 460 100 HOH HOH . 
E 4 HOH A 87 461 101 HOH HOH . 
E 4 HOH A 88 462 103 HOH HOH . 
E 4 HOH A 89 463 106 HOH HOH . 
E 4 HOH A 90 464 109 HOH HOH . 
E 4 HOH A 91 465 112 HOH HOH . 
E 4 HOH A 92 466 113 HOH HOH . 
E 4 HOH A 93 467 114 HOH HOH . 
E 4 HOH A 94 468 115 HOH HOH . 
E 4 HOH A 95 469 116 HOH HOH . 
E 4 HOH A 96 470 118 HOH HOH . 
E 4 HOH A 97 471 119 HOH HOH . 
E 4 HOH A 98 472 121 HOH HOH . 
E 4 HOH A 99 473 122 HOH HOH . 
E 4 HOH A 100 474 124 HOH HOH . 
E 4 HOH A 101 475 125 HOH HOH . 
E 4 HOH A 102 476 126 HOH HOH . 
E 4 HOH A 103 477 128 HOH HOH . 
E 4 HOH A 104 478 129 HOH HOH . 
E 4 HOH A 105 479 131 HOH HOH . 
E 4 HOH A 106 480 132 HOH HOH . 
E 4 HOH A 107 481 133 HOH HOH . 
E 4 HOH A 108 482 136 HOH HOH . 
E 4 HOH A 109 483 137 HOH HOH . 
E 4 HOH A 110 484 138 HOH HOH . 
E 4 HOH A 111 485 139 HOH HOH . 
E 4 HOH A 112 486 140 HOH HOH . 
E 4 HOH A 113 487 141 HOH HOH . 
E 4 HOH A 114 488 142 HOH HOH . 
E 4 HOH A 115 489 143 HOH HOH . 
E 4 HOH A 116 490 144 HOH HOH . 
E 4 HOH A 117 491 145 HOH HOH . 
E 4 HOH A 118 492 146 HOH HOH . 
E 4 HOH A 119 493 147 HOH HOH . 
E 4 HOH A 120 494 148 HOH HOH . 
E 4 HOH A 121 495 149 HOH HOH . 
E 4 HOH A 122 496 150 HOH HOH . 
E 4 HOH A 123 497 152 HOH HOH . 
E 4 HOH A 124 498 153 HOH HOH . 
E 4 HOH A 125 499 154 HOH HOH . 
E 4 HOH A 126 500 155 HOH HOH . 
E 4 HOH A 127 501 156 HOH HOH . 
E 4 HOH A 128 502 157 HOH HOH . 
E 4 HOH A 129 503 158 HOH HOH . 
E 4 HOH A 130 504 159 HOH HOH . 
E 4 HOH A 131 505 160 HOH HOH . 
E 4 HOH A 132 506 161 HOH HOH . 
E 4 HOH A 133 507 162 HOH HOH . 
E 4 HOH A 134 508 163 HOH HOH . 
E 4 HOH A 135 509 164 HOH HOH . 
E 4 HOH A 136 510 165 HOH HOH . 
E 4 HOH A 137 511 166 HOH HOH . 
E 4 HOH A 138 512 167 HOH HOH . 
E 4 HOH A 139 513 168 HOH HOH . 
E 4 HOH A 140 514 169 HOH HOH . 
E 4 HOH A 141 515 170 HOH HOH . 
E 4 HOH A 142 516 171 HOH HOH . 
E 4 HOH A 143 517 172 HOH HOH . 
E 4 HOH A 144 518 173 HOH HOH . 
E 4 HOH A 145 519 174 HOH HOH . 
E 4 HOH A 146 520 175 HOH HOH . 
E 4 HOH A 147 521 176 HOH HOH . 
E 4 HOH A 148 522 177 HOH HOH . 
E 4 HOH A 149 523 178 HOH HOH . 
E 4 HOH A 150 524 179 HOH HOH . 
E 4 HOH A 151 525 180 HOH HOH . 
E 4 HOH A 152 526 181 HOH HOH . 
E 4 HOH A 153 527 182 HOH HOH . 
E 4 HOH A 154 528 183 HOH HOH . 
E 4 HOH A 155 529 184 HOH HOH . 
E 4 HOH A 156 530 185 HOH HOH . 
E 4 HOH A 157 531 186 HOH HOH . 
E 4 HOH A 158 532 187 HOH HOH . 
E 4 HOH A 159 533 188 HOH HOH . 
E 4 HOH A 160 534 189 HOH HOH . 
E 4 HOH A 161 535 190 HOH HOH . 
E 4 HOH A 162 536 191 HOH HOH . 
E 4 HOH A 163 537 192 HOH HOH . 
E 4 HOH A 164 538 193 HOH HOH . 
E 4 HOH A 165 539 194 HOH HOH . 
E 4 HOH A 166 540 195 HOH HOH . 
E 4 HOH A 167 541 196 HOH HOH . 
E 4 HOH A 168 542 197 HOH HOH . 
E 4 HOH A 169 543 198 HOH HOH . 
E 4 HOH A 170 544 199 HOH HOH . 
E 4 HOH A 171 545 200 HOH HOH . 
E 4 HOH A 172 546 201 HOH HOH . 
E 4 HOH A 173 547 202 HOH HOH . 
E 4 HOH A 174 548 203 HOH HOH . 
E 4 HOH A 175 549 205 HOH HOH . 
E 4 HOH A 176 550 206 HOH HOH . 
E 4 HOH A 177 551 207 HOH HOH . 
E 4 HOH A 178 552 208 HOH HOH . 
E 4 HOH A 179 553 209 HOH HOH . 
E 4 HOH A 180 554 210 HOH HOH . 
E 4 HOH A 181 555 211 HOH HOH . 
E 4 HOH A 182 556 212 HOH HOH . 
E 4 HOH A 183 557 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 29.07 -31.404 52.342 1 55.43 ? C1 GOL 373 A 1 
HETATM 2 O O1 GOL . . . D 3 28.833 -31.818 51.008 1 58.01 ? O1 GOL 373 A 1 
HETATM 3 C C2 GOL . . . D 3 28.863 -32.548 53.333 1 53.29 ? C2 GOL 373 A 1 
HETATM 4 O O2 GOL . . . D 3 30.103 -33.013 53.824 1 55.87 ? O2 GOL 373 A 1 
HETATM 5 C C3 GOL . . . D 3 27.952 -32.12 54.49 1 63.72 ? C3 GOL 373 A 1 
HETATM 6 O O3 GOL . . . D 3 28.378 -30.909 55.082 1 49.91 ? O3 GOL 373 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#