data_3GR8 # _model_server_result.job_id gVIw1ZUkUqE0iIbkFvl1uw _model_server_result.datetime_utc '2024-11-05 03:57:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":344}' # _entry.id 3GR8 # _exptl.entry_id 3GR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.24 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GR8 _cell.length_a 82.394 _cell.length_b 151.93 _cell.length_c 143.744 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1,2 B,G,I 1 3,4 A,C,D,E,F,H 2 1,2 B,G,I 3 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 75.965 0 3 'crystal symmetry operation' 3_554 -x,y+1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 75.965 -71.872 4 'crystal symmetry operation' 8_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -71.872 5 'crystal symmetry operation' 6_545 -x,-y-1/2,z -1 0 0 0 -1 0 0 0 1 0 -75.965 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C8 H19 N O5' _chem_comp.formula_weight 209.24 _chem_comp.id BTB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIS-TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BTB sing 70 n n C1 C2 BTB sing 71 n n C1 H11 BTB sing 72 n n C1 H12 BTB sing 73 n n O1 HO1 BTB sing 74 n n C2 C3 BTB sing 75 n n C2 C4 BTB sing 76 n n C2 N BTB sing 77 n n C3 O3 BTB sing 78 n n C3 H31 BTB sing 79 n n C3 H32 BTB sing 80 n n O3 HO3 BTB sing 81 n n C4 O4 BTB sing 82 n n C4 H41 BTB sing 83 n n C4 H42 BTB sing 84 n n O4 HO4 BTB sing 85 n n N C5 BTB sing 86 n n N C7 BTB sing 87 n n C5 C6 BTB sing 88 n n C5 H51 BTB sing 89 n n C5 H52 BTB sing 90 n n C6 O6 BTB sing 91 n n C6 H61 BTB sing 92 n n C6 H62 BTB sing 93 n n O6 HO6 BTB sing 94 n n C7 C8 BTB sing 95 n n C7 H71 BTB sing 96 n n C7 H72 BTB sing 97 n n C8 O8 BTB sing 98 n n C8 H81 BTB sing 99 n n C8 H82 BTB sing 100 n n O8 HO8 BTB sing 101 n n # _atom_sites.entry_id 3GR8 _atom_sites.fract_transf_matrix[1][1] 0.012137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 341 341 FMN FMN . D 3 SO4 A 1 342 342 SO4 SO4 . E 4 BTB A 1 343 343 BTB BTB . F 4 BTB A 1 344 344 BTB BTB . G 2 FMN B 1 341 341 FMN FMN . H 5 HOH A 1 345 345 HOH HOH . H 5 HOH A 2 346 346 HOH HOH . H 5 HOH A 3 347 347 HOH HOH . H 5 HOH A 4 348 348 HOH HOH . H 5 HOH A 5 349 349 HOH HOH . H 5 HOH A 6 350 350 HOH HOH . H 5 HOH A 7 351 351 HOH HOH . H 5 HOH A 8 352 352 HOH HOH . H 5 HOH A 9 353 353 HOH HOH . H 5 HOH A 10 354 354 HOH HOH . H 5 HOH A 11 355 355 HOH HOH . H 5 HOH A 12 356 356 HOH HOH . H 5 HOH A 13 357 357 HOH HOH . H 5 HOH A 14 358 358 HOH HOH . H 5 HOH A 15 359 359 HOH HOH . H 5 HOH A 16 360 360 HOH HOH . H 5 HOH A 17 361 361 HOH HOH . H 5 HOH A 18 362 362 HOH HOH . H 5 HOH A 19 363 363 HOH HOH . H 5 HOH A 20 364 364 HOH HOH . H 5 HOH A 21 365 365 HOH HOH . H 5 HOH A 22 366 366 HOH HOH . H 5 HOH A 23 367 367 HOH HOH . H 5 HOH A 24 368 368 HOH HOH . H 5 HOH A 25 369 369 HOH HOH . H 5 HOH A 26 370 370 HOH HOH . H 5 HOH A 27 371 371 HOH HOH . H 5 HOH A 28 372 372 HOH HOH . H 5 HOH A 29 373 373 HOH HOH . H 5 HOH A 30 374 374 HOH HOH . H 5 HOH A 31 375 375 HOH HOH . H 5 HOH A 32 376 376 HOH HOH . H 5 HOH A 33 377 377 HOH HOH . H 5 HOH A 34 378 378 HOH HOH . H 5 HOH A 35 379 379 HOH HOH . H 5 HOH A 36 380 380 HOH HOH . H 5 HOH A 37 381 381 HOH HOH . H 5 HOH A 38 382 382 HOH HOH . H 5 HOH A 39 383 383 HOH HOH . H 5 HOH A 40 384 384 HOH HOH . H 5 HOH A 41 385 385 HOH HOH . H 5 HOH A 42 386 386 HOH HOH . H 5 HOH A 43 387 387 HOH HOH . H 5 HOH A 44 388 388 HOH HOH . H 5 HOH A 45 389 389 HOH HOH . H 5 HOH A 46 390 390 HOH HOH . H 5 HOH A 47 391 391 HOH HOH . H 5 HOH A 48 392 392 HOH HOH . H 5 HOH A 49 393 393 HOH HOH . H 5 HOH A 50 394 394 HOH HOH . H 5 HOH A 51 395 395 HOH HOH . H 5 HOH A 52 396 396 HOH HOH . H 5 HOH A 53 397 397 HOH HOH . H 5 HOH A 54 398 398 HOH HOH . H 5 HOH A 55 399 399 HOH HOH . H 5 HOH A 56 400 400 HOH HOH . H 5 HOH A 57 401 401 HOH HOH . H 5 HOH A 58 402 402 HOH HOH . H 5 HOH A 59 403 403 HOH HOH . H 5 HOH A 60 404 404 HOH HOH . H 5 HOH A 61 405 405 HOH HOH . H 5 HOH A 62 406 406 HOH HOH . H 5 HOH A 63 407 407 HOH HOH . H 5 HOH A 64 408 408 HOH HOH . H 5 HOH A 65 409 409 HOH HOH . H 5 HOH A 66 410 410 HOH HOH . H 5 HOH A 67 411 411 HOH HOH . H 5 HOH A 68 412 412 HOH HOH . H 5 HOH A 69 413 413 HOH HOH . H 5 HOH A 70 414 414 HOH HOH . H 5 HOH A 71 415 415 HOH HOH . H 5 HOH A 72 416 416 HOH HOH . H 5 HOH A 73 417 417 HOH HOH . H 5 HOH A 74 418 418 HOH HOH . H 5 HOH A 75 419 419 HOH HOH . H 5 HOH A 76 420 420 HOH HOH . H 5 HOH A 77 421 421 HOH HOH . H 5 HOH A 78 422 422 HOH HOH . H 5 HOH A 79 423 423 HOH HOH . H 5 HOH A 80 424 424 HOH HOH . H 5 HOH A 81 425 425 HOH HOH . H 5 HOH A 82 426 426 HOH HOH . H 5 HOH A 83 427 427 HOH HOH . H 5 HOH A 84 428 428 HOH HOH . H 5 HOH A 85 429 429 HOH HOH . H 5 HOH A 86 430 430 HOH HOH . H 5 HOH A 87 431 431 HOH HOH . H 5 HOH A 88 432 432 HOH HOH . H 5 HOH A 89 433 433 HOH HOH . H 5 HOH A 90 434 434 HOH HOH . H 5 HOH A 91 435 435 HOH HOH . H 5 HOH A 92 436 436 HOH HOH . H 5 HOH A 93 437 437 HOH HOH . H 5 HOH A 94 438 438 HOH HOH . H 5 HOH A 95 439 439 HOH HOH . H 5 HOH A 96 440 440 HOH HOH . H 5 HOH A 97 441 441 HOH HOH . H 5 HOH A 98 442 442 HOH HOH . H 5 HOH A 99 443 443 HOH HOH . H 5 HOH A 100 444 444 HOH HOH . H 5 HOH A 101 445 445 HOH HOH . H 5 HOH A 102 446 446 HOH HOH . H 5 HOH A 103 447 447 HOH HOH . H 5 HOH A 104 448 448 HOH HOH . H 5 HOH A 105 449 449 HOH HOH . H 5 HOH A 106 450 450 HOH HOH . H 5 HOH A 107 451 451 HOH HOH . H 5 HOH A 108 452 452 HOH HOH . H 5 HOH A 109 453 453 HOH HOH . H 5 HOH A 110 454 454 HOH HOH . H 5 HOH A 111 455 455 HOH HOH . H 5 HOH A 112 456 456 HOH HOH . H 5 HOH A 113 457 457 HOH HOH . H 5 HOH A 114 458 458 HOH HOH . H 5 HOH A 115 459 459 HOH HOH . H 5 HOH A 116 460 460 HOH HOH . H 5 HOH A 117 461 461 HOH HOH . H 5 HOH A 118 462 462 HOH HOH . H 5 HOH A 119 463 463 HOH HOH . H 5 HOH A 120 464 464 HOH HOH . H 5 HOH A 121 465 465 HOH HOH . H 5 HOH A 122 466 466 HOH HOH . H 5 HOH A 123 467 467 HOH HOH . H 5 HOH A 124 468 468 HOH HOH . H 5 HOH A 125 469 469 HOH HOH . H 5 HOH A 126 470 470 HOH HOH . H 5 HOH A 127 471 471 HOH HOH . H 5 HOH A 128 472 472 HOH HOH . H 5 HOH A 129 473 473 HOH HOH . H 5 HOH A 130 474 474 HOH HOH . H 5 HOH A 131 475 475 HOH HOH . H 5 HOH A 132 476 476 HOH HOH . H 5 HOH A 133 477 477 HOH HOH . H 5 HOH A 134 478 478 HOH HOH . H 5 HOH A 135 479 479 HOH HOH . H 5 HOH A 136 480 480 HOH HOH . H 5 HOH A 137 481 481 HOH HOH . H 5 HOH A 138 482 482 HOH HOH . H 5 HOH A 139 483 483 HOH HOH . H 5 HOH A 140 484 484 HOH HOH . H 5 HOH A 141 485 485 HOH HOH . H 5 HOH A 142 486 486 HOH HOH . I 5 HOH B 1 342 342 HOH HOH . I 5 HOH B 2 343 343 HOH HOH . I 5 HOH B 3 344 344 HOH HOH . I 5 HOH B 4 345 345 HOH HOH . I 5 HOH B 5 346 346 HOH HOH . I 5 HOH B 6 347 347 HOH HOH . I 5 HOH B 7 348 348 HOH HOH . I 5 HOH B 8 349 349 HOH HOH . I 5 HOH B 9 350 350 HOH HOH . I 5 HOH B 10 351 351 HOH HOH . I 5 HOH B 11 352 352 HOH HOH . I 5 HOH B 12 353 353 HOH HOH . I 5 HOH B 13 354 354 HOH HOH . I 5 HOH B 14 355 355 HOH HOH . I 5 HOH B 15 356 356 HOH HOH . I 5 HOH B 16 357 357 HOH HOH . I 5 HOH B 17 358 358 HOH HOH . I 5 HOH B 18 359 359 HOH HOH . I 5 HOH B 19 360 360 HOH HOH . I 5 HOH B 20 361 361 HOH HOH . I 5 HOH B 21 362 362 HOH HOH . I 5 HOH B 22 363 363 HOH HOH . I 5 HOH B 23 364 364 HOH HOH . I 5 HOH B 24 365 365 HOH HOH . I 5 HOH B 25 366 366 HOH HOH . I 5 HOH B 26 367 367 HOH HOH . I 5 HOH B 27 368 368 HOH HOH . I 5 HOH B 28 369 369 HOH HOH . I 5 HOH B 29 370 370 HOH HOH . I 5 HOH B 30 371 371 HOH HOH . I 5 HOH B 31 372 372 HOH HOH . I 5 HOH B 32 373 373 HOH HOH . I 5 HOH B 33 374 374 HOH HOH . I 5 HOH B 34 375 375 HOH HOH . I 5 HOH B 35 376 376 HOH HOH . I 5 HOH B 36 377 377 HOH HOH . I 5 HOH B 37 378 378 HOH HOH . I 5 HOH B 38 379 379 HOH HOH . I 5 HOH B 39 380 380 HOH HOH . I 5 HOH B 40 381 381 HOH HOH . I 5 HOH B 41 382 382 HOH HOH . I 5 HOH B 42 383 383 HOH HOH . I 5 HOH B 43 384 384 HOH HOH . I 5 HOH B 44 385 385 HOH HOH . I 5 HOH B 45 386 386 HOH HOH . I 5 HOH B 46 387 387 HOH HOH . I 5 HOH B 47 388 388 HOH HOH . I 5 HOH B 48 389 389 HOH HOH . I 5 HOH B 49 390 390 HOH HOH . I 5 HOH B 50 391 391 HOH HOH . I 5 HOH B 51 392 392 HOH HOH . I 5 HOH B 52 393 393 HOH HOH . I 5 HOH B 53 394 394 HOH HOH . I 5 HOH B 54 395 395 HOH HOH . I 5 HOH B 55 396 396 HOH HOH . I 5 HOH B 56 397 397 HOH HOH . I 5 HOH B 57 398 398 HOH HOH . I 5 HOH B 58 399 399 HOH HOH . I 5 HOH B 59 400 400 HOH HOH . I 5 HOH B 60 401 401 HOH HOH . I 5 HOH B 61 402 402 HOH HOH . I 5 HOH B 62 403 403 HOH HOH . I 5 HOH B 63 404 404 HOH HOH . I 5 HOH B 64 405 405 HOH HOH . I 5 HOH B 65 406 406 HOH HOH . I 5 HOH B 66 407 407 HOH HOH . I 5 HOH B 67 408 408 HOH HOH . I 5 HOH B 68 409 409 HOH HOH . I 5 HOH B 69 410 410 HOH HOH . I 5 HOH B 70 411 411 HOH HOH . I 5 HOH B 71 412 412 HOH HOH . I 5 HOH B 72 413 413 HOH HOH . I 5 HOH B 73 414 414 HOH HOH . I 5 HOH B 74 415 415 HOH HOH . I 5 HOH B 75 416 416 HOH HOH . I 5 HOH B 76 417 417 HOH HOH . I 5 HOH B 77 418 418 HOH HOH . I 5 HOH B 78 419 419 HOH HOH . I 5 HOH B 79 420 420 HOH HOH . I 5 HOH B 80 421 421 HOH HOH . I 5 HOH B 81 422 422 HOH HOH . I 5 HOH B 82 423 423 HOH HOH . I 5 HOH B 83 424 424 HOH HOH . I 5 HOH B 84 425 425 HOH HOH . I 5 HOH B 85 426 426 HOH HOH . I 5 HOH B 86 427 427 HOH HOH . I 5 HOH B 87 428 428 HOH HOH . I 5 HOH B 88 429 429 HOH HOH . I 5 HOH B 89 430 430 HOH HOH . I 5 HOH B 90 431 431 HOH HOH . I 5 HOH B 91 432 432 HOH HOH . I 5 HOH B 92 433 433 HOH HOH . I 5 HOH B 93 434 434 HOH HOH . I 5 HOH B 94 435 435 HOH HOH . I 5 HOH B 95 436 436 HOH HOH . I 5 HOH B 96 437 437 HOH HOH . I 5 HOH B 97 438 438 HOH HOH . I 5 HOH B 98 439 439 HOH HOH . I 5 HOH B 99 440 440 HOH HOH . I 5 HOH B 100 441 441 HOH HOH . I 5 HOH B 101 442 442 HOH HOH . I 5 HOH B 102 443 443 HOH HOH . I 5 HOH B 103 444 444 HOH HOH . I 5 HOH B 104 445 445 HOH HOH . I 5 HOH B 105 446 446 HOH HOH . I 5 HOH B 106 447 447 HOH HOH . I 5 HOH B 107 448 448 HOH HOH . I 5 HOH B 108 449 449 HOH HOH . I 5 HOH B 109 450 450 HOH HOH . I 5 HOH B 110 451 451 HOH HOH . I 5 HOH B 111 452 452 HOH HOH . I 5 HOH B 112 453 453 HOH HOH . I 5 HOH B 113 454 454 HOH HOH . I 5 HOH B 114 455 455 HOH HOH . I 5 HOH B 115 456 456 HOH HOH . I 5 HOH B 116 457 457 HOH HOH . I 5 HOH B 117 458 458 HOH HOH . I 5 HOH B 118 459 459 HOH HOH . I 5 HOH B 119 460 460 HOH HOH . I 5 HOH B 120 461 461 HOH HOH . I 5 HOH B 121 462 462 HOH HOH . I 5 HOH B 122 463 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BTB . . . F 4 -11.237 -1.144 0.06 1 36.02 ? C1 BTB 344 A 1 HETATM 2 O O1 BTB . . . F 4 -12.658 -0.971 0.018 1 42.82 ? O1 BTB 344 A 1 HETATM 3 C C2 BTB . . . F 4 -10.859 -1.95 1.296 1 39.41 ? C2 BTB 344 A 1 HETATM 4 C C3 BTB . . . F 4 -11.949 -2.993 1.518 1 44.02 ? C3 BTB 344 A 1 HETATM 5 O O3 BTB . . . F 4 -11.38 -4.304 1.649 1 42.25 ? O3 BTB 344 A 1 HETATM 6 C C4 BTB . . . F 4 -10.78 -1.021 2.499 1 37.65 ? C4 BTB 344 A 1 HETATM 7 O O4 BTB . . . F 4 -10.993 -1.765 3.705 1 45.65 ? O4 BTB 344 A 1 HETATM 8 N N BTB . . . F 4 -9.569 -2.575 1.077 1 37.3 ? N BTB 344 A 1 HETATM 9 C C5 BTB . . . F 4 -9.029 -2.491 -0.273 1 31.43 ? C5 BTB 344 A 1 HETATM 10 C C6 BTB . . . F 4 -8.322 -3.816 -0.525 1 34.9 ? C6 BTB 344 A 1 HETATM 11 O O6 BTB . . . F 4 -8.15 -4.006 -1.935 1 34.55 ? O6 BTB 344 A 1 HETATM 12 C C7 BTB . . . F 4 -8.646 -2.594 2.205 1 34.5 ? C7 BTB 344 A 1 HETATM 13 C C8 BTB . . . F 4 -8.657 -4.026 2.739 1 37.17 ? C8 BTB 344 A 1 HETATM 14 O O8 BTB . . . F 4 -7.852 -4.099 3.923 1 37.35 ? O8 BTB 344 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #