data_3GRJ # _model_server_result.job_id IyHEkeNJhj0SWEeTOzpKEg _model_server_result.datetime_utc '2024-11-15 12:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3grj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3GRJ # _exptl.entry_id 3GRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.183 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-phenyl-1H-imidazole-4-carboxylic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.66 _cell.angle_gamma 90 _cell.entry_id 3GRJ _cell.length_a 117.508 _cell.length_b 76.811 _cell.length_c 98.005 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,R 1 1 B,I,J,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N # _chem_comp.formula 'C10 H8 N2 O2' _chem_comp.formula_weight 188.183 _chem_comp.id G14 _chem_comp.mon_nstd_flag . _chem_comp.name '2-phenyl-1H-imidazole-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C12 G14 sing 79 n n O14 HO14 G14 sing 80 n n O13 C12 G14 doub 81 n n C12 C10 G14 sing 82 n n C10 C9 G14 doub 83 n y C10 N11 G14 sing 84 n y C9 N8 G14 sing 85 n y C9 H9 G14 sing 86 n n N8 C7 G14 sing 87 n y N11 C7 G14 doub 88 n y C7 C6 G14 sing 89 n y C6 C5 G14 doub 90 n y C6 C1 G14 sing 91 n y C1 C2 G14 doub 92 n y C1 H1 G14 sing 93 n n C2 C3 G14 sing 94 n y C2 H2 G14 sing 95 n n C4 C3 G14 doub 96 n y C3 H3 G14 sing 97 n n C5 C4 G14 sing 98 n y C4 H4 G14 sing 99 n n C5 H5 G14 sing 100 n n N8 HN8 G14 sing 101 n n # _atom_sites.entry_id 3GRJ _atom_sites.fract_transf_matrix[1][1] 0.00851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004272 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 2 2 PO4 PO4 . D 2 PO4 A 1 362 5 PO4 PO4 . E 2 PO4 A 1 363 6 PO4 PO4 . F 3 G14 A 1 1 1 G14 G14 . G 4 PEG A 1 364 1 PEG PEG . H 3 G14 A 1 365 1 G14 G14 . I 2 PO4 B 1 1 1 PO4 PO4 . J 2 PO4 B 1 3 3 PO4 PO4 . K 2 PO4 B 1 362 4 PO4 PO4 . L 3 G14 B 1 363 1 G14 G14 . M 5 DMS B 1 364 1 DMS DMS . N 4 PEG B 1 365 1 PEG PEG . O 4 PEG B 1 366 1 PEG PEG . P 5 DMS B 1 367 1 DMS DMS . Q 5 DMS B 1 368 1 DMS DMS . R 6 HOH A 1 366 7 HOH HOH . R 6 HOH A 2 367 8 HOH HOH . R 6 HOH A 3 368 9 HOH HOH . R 6 HOH A 4 369 11 HOH HOH . R 6 HOH A 5 370 13 HOH HOH . R 6 HOH A 6 371 18 HOH HOH . R 6 HOH A 7 372 20 HOH HOH . R 6 HOH A 8 373 22 HOH HOH . R 6 HOH A 9 374 24 HOH HOH . R 6 HOH A 10 375 27 HOH HOH . R 6 HOH A 11 376 31 HOH HOH . R 6 HOH A 12 377 32 HOH HOH . R 6 HOH A 13 378 36 HOH HOH . R 6 HOH A 14 379 37 HOH HOH . R 6 HOH A 15 380 38 HOH HOH . R 6 HOH A 16 381 39 HOH HOH . R 6 HOH A 17 382 42 HOH HOH . R 6 HOH A 18 383 44 HOH HOH . R 6 HOH A 19 384 46 HOH HOH . R 6 HOH A 20 385 47 HOH HOH . R 6 HOH A 21 386 49 HOH HOH . R 6 HOH A 22 387 52 HOH HOH . R 6 HOH A 23 388 53 HOH HOH . R 6 HOH A 24 389 55 HOH HOH . R 6 HOH A 25 390 57 HOH HOH . R 6 HOH A 26 391 58 HOH HOH . R 6 HOH A 27 392 59 HOH HOH . R 6 HOH A 28 393 60 HOH HOH . R 6 HOH A 29 394 61 HOH HOH . R 6 HOH A 30 395 62 HOH HOH . R 6 HOH A 31 396 63 HOH HOH . R 6 HOH A 32 397 64 HOH HOH . R 6 HOH A 33 398 67 HOH HOH . R 6 HOH A 34 399 68 HOH HOH . R 6 HOH A 35 400 69 HOH HOH . R 6 HOH A 36 401 71 HOH HOH . R 6 HOH A 37 402 76 HOH HOH . R 6 HOH A 38 403 78 HOH HOH . R 6 HOH A 39 404 79 HOH HOH . R 6 HOH A 40 405 80 HOH HOH . R 6 HOH A 41 406 81 HOH HOH . R 6 HOH A 42 407 83 HOH HOH . R 6 HOH A 43 408 85 HOH HOH . R 6 HOH A 44 409 88 HOH HOH . R 6 HOH A 45 410 89 HOH HOH . R 6 HOH A 46 411 91 HOH HOH . R 6 HOH A 47 412 92 HOH HOH . R 6 HOH A 48 413 93 HOH HOH . R 6 HOH A 49 414 95 HOH HOH . R 6 HOH A 50 415 105 HOH HOH . R 6 HOH A 51 416 106 HOH HOH . R 6 HOH A 52 417 108 HOH HOH . R 6 HOH A 53 418 109 HOH HOH . R 6 HOH A 54 419 110 HOH HOH . R 6 HOH A 55 420 111 HOH HOH . R 6 HOH A 56 421 113 HOH HOH . R 6 HOH A 57 422 115 HOH HOH . R 6 HOH A 58 423 117 HOH HOH . R 6 HOH A 59 424 118 HOH HOH . R 6 HOH A 60 425 122 HOH HOH . R 6 HOH A 61 426 123 HOH HOH . R 6 HOH A 62 427 125 HOH HOH . R 6 HOH A 63 428 128 HOH HOH . R 6 HOH A 64 429 133 HOH HOH . R 6 HOH A 65 430 135 HOH HOH . R 6 HOH A 66 431 138 HOH HOH . R 6 HOH A 67 432 140 HOH HOH . R 6 HOH A 68 433 142 HOH HOH . R 6 HOH A 69 434 143 HOH HOH . R 6 HOH A 70 435 144 HOH HOH . R 6 HOH A 71 436 145 HOH HOH . R 6 HOH A 72 437 146 HOH HOH . R 6 HOH A 73 438 147 HOH HOH . R 6 HOH A 74 439 151 HOH HOH . R 6 HOH A 75 440 152 HOH HOH . R 6 HOH A 76 441 153 HOH HOH . R 6 HOH A 77 442 154 HOH HOH . R 6 HOH A 78 443 155 HOH HOH . R 6 HOH A 79 444 156 HOH HOH . R 6 HOH A 80 445 158 HOH HOH . R 6 HOH A 81 446 159 HOH HOH . R 6 HOH A 82 447 161 HOH HOH . R 6 HOH A 83 448 162 HOH HOH . R 6 HOH A 84 449 166 HOH HOH . R 6 HOH A 85 450 168 HOH HOH . R 6 HOH A 86 451 169 HOH HOH . R 6 HOH A 87 452 170 HOH HOH . R 6 HOH A 88 453 172 HOH HOH . R 6 HOH A 89 454 178 HOH HOH . R 6 HOH A 90 455 179 HOH HOH . R 6 HOH A 91 456 180 HOH HOH . R 6 HOH A 92 457 181 HOH HOH . R 6 HOH A 93 458 183 HOH HOH . R 6 HOH A 94 459 185 HOH HOH . R 6 HOH A 95 460 187 HOH HOH . R 6 HOH A 96 461 192 HOH HOH . R 6 HOH A 97 462 193 HOH HOH . R 6 HOH A 98 463 195 HOH HOH . R 6 HOH A 99 464 196 HOH HOH . R 6 HOH A 100 465 198 HOH HOH . R 6 HOH A 101 467 205 HOH HOH . R 6 HOH A 102 469 207 HOH HOH . R 6 HOH A 103 470 208 HOH HOH . R 6 HOH A 104 471 214 HOH HOH . R 6 HOH A 105 472 215 HOH HOH . R 6 HOH A 106 473 216 HOH HOH . R 6 HOH A 107 474 218 HOH HOH . R 6 HOH A 108 475 219 HOH HOH . R 6 HOH A 109 476 223 HOH HOH . R 6 HOH A 110 477 224 HOH HOH . R 6 HOH A 111 478 225 HOH HOH . R 6 HOH A 112 479 226 HOH HOH . R 6 HOH A 113 480 231 HOH HOH . R 6 HOH A 114 481 232 HOH HOH . R 6 HOH A 115 482 233 HOH HOH . R 6 HOH A 116 483 236 HOH HOH . R 6 HOH A 117 484 238 HOH HOH . R 6 HOH A 118 485 240 HOH HOH . R 6 HOH A 119 486 242 HOH HOH . R 6 HOH A 120 487 243 HOH HOH . R 6 HOH A 121 488 244 HOH HOH . R 6 HOH A 122 489 246 HOH HOH . R 6 HOH A 123 490 248 HOH HOH . R 6 HOH A 124 491 249 HOH HOH . R 6 HOH A 125 492 250 HOH HOH . S 6 HOH B 1 2 2 HOH HOH . S 6 HOH B 2 369 3 HOH HOH . S 6 HOH B 3 370 4 HOH HOH . S 6 HOH B 4 371 5 HOH HOH . S 6 HOH B 5 372 6 HOH HOH . S 6 HOH B 6 373 10 HOH HOH . S 6 HOH B 7 374 12 HOH HOH . S 6 HOH B 8 375 14 HOH HOH . S 6 HOH B 9 376 15 HOH HOH . S 6 HOH B 10 377 16 HOH HOH . S 6 HOH B 11 378 17 HOH HOH . S 6 HOH B 12 379 19 HOH HOH . S 6 HOH B 13 380 21 HOH HOH . S 6 HOH B 14 381 23 HOH HOH . S 6 HOH B 15 382 25 HOH HOH . S 6 HOH B 16 383 26 HOH HOH . S 6 HOH B 17 384 28 HOH HOH . S 6 HOH B 18 385 29 HOH HOH . S 6 HOH B 19 386 30 HOH HOH . S 6 HOH B 20 387 33 HOH HOH . S 6 HOH B 21 388 34 HOH HOH . S 6 HOH B 22 389 35 HOH HOH . S 6 HOH B 23 390 40 HOH HOH . S 6 HOH B 24 391 41 HOH HOH . S 6 HOH B 25 392 43 HOH HOH . S 6 HOH B 26 393 45 HOH HOH . S 6 HOH B 27 394 48 HOH HOH . S 6 HOH B 28 395 50 HOH HOH . S 6 HOH B 29 396 54 HOH HOH . S 6 HOH B 30 397 56 HOH HOH . S 6 HOH B 31 398 65 HOH HOH . S 6 HOH B 32 399 66 HOH HOH . S 6 HOH B 33 400 70 HOH HOH . S 6 HOH B 34 401 73 HOH HOH . S 6 HOH B 35 402 74 HOH HOH . S 6 HOH B 36 403 75 HOH HOH . S 6 HOH B 37 404 77 HOH HOH . S 6 HOH B 38 405 82 HOH HOH . S 6 HOH B 39 406 84 HOH HOH . S 6 HOH B 40 407 86 HOH HOH . S 6 HOH B 41 408 87 HOH HOH . S 6 HOH B 42 409 90 HOH HOH . S 6 HOH B 43 410 94 HOH HOH . S 6 HOH B 44 411 96 HOH HOH . S 6 HOH B 45 412 97 HOH HOH . S 6 HOH B 46 413 98 HOH HOH . S 6 HOH B 47 414 99 HOH HOH . S 6 HOH B 48 415 100 HOH HOH . S 6 HOH B 49 416 101 HOH HOH . S 6 HOH B 50 417 102 HOH HOH . S 6 HOH B 51 418 103 HOH HOH . S 6 HOH B 52 419 104 HOH HOH . S 6 HOH B 53 420 107 HOH HOH . S 6 HOH B 54 421 112 HOH HOH . S 6 HOH B 55 422 114 HOH HOH . S 6 HOH B 56 423 116 HOH HOH . S 6 HOH B 57 424 119 HOH HOH . S 6 HOH B 58 425 120 HOH HOH . S 6 HOH B 59 426 121 HOH HOH . S 6 HOH B 60 427 124 HOH HOH . S 6 HOH B 61 428 126 HOH HOH . S 6 HOH B 62 429 127 HOH HOH . S 6 HOH B 63 430 129 HOH HOH . S 6 HOH B 64 431 130 HOH HOH . S 6 HOH B 65 432 131 HOH HOH . S 6 HOH B 66 433 132 HOH HOH . S 6 HOH B 67 434 134 HOH HOH . S 6 HOH B 68 435 136 HOH HOH . S 6 HOH B 69 436 137 HOH HOH . S 6 HOH B 70 437 139 HOH HOH . S 6 HOH B 71 438 141 HOH HOH . S 6 HOH B 72 439 148 HOH HOH . S 6 HOH B 73 440 149 HOH HOH . S 6 HOH B 74 441 150 HOH HOH . S 6 HOH B 75 442 157 HOH HOH . S 6 HOH B 76 443 160 HOH HOH . S 6 HOH B 77 444 163 HOH HOH . S 6 HOH B 78 445 164 HOH HOH . S 6 HOH B 79 446 165 HOH HOH . S 6 HOH B 80 447 167 HOH HOH . S 6 HOH B 81 448 171 HOH HOH . S 6 HOH B 82 449 173 HOH HOH . S 6 HOH B 83 450 174 HOH HOH . S 6 HOH B 84 451 175 HOH HOH . S 6 HOH B 85 452 176 HOH HOH . S 6 HOH B 86 453 182 HOH HOH . S 6 HOH B 87 454 184 HOH HOH . S 6 HOH B 88 455 186 HOH HOH . S 6 HOH B 89 456 188 HOH HOH . S 6 HOH B 90 457 189 HOH HOH . S 6 HOH B 91 458 190 HOH HOH . S 6 HOH B 92 459 191 HOH HOH . S 6 HOH B 93 460 197 HOH HOH . S 6 HOH B 94 461 199 HOH HOH . S 6 HOH B 95 462 200 HOH HOH . S 6 HOH B 96 463 201 HOH HOH . S 6 HOH B 97 464 203 HOH HOH . S 6 HOH B 98 465 209 HOH HOH . S 6 HOH B 99 466 204 HOH HOH . S 6 HOH B 100 467 211 HOH HOH . S 6 HOH B 101 468 206 HOH HOH . S 6 HOH B 102 469 217 HOH HOH . S 6 HOH B 103 470 221 HOH HOH . S 6 HOH B 104 471 222 HOH HOH . S 6 HOH B 105 472 227 HOH HOH . S 6 HOH B 106 473 228 HOH HOH . S 6 HOH B 107 474 229 HOH HOH . S 6 HOH B 108 475 230 HOH HOH . S 6 HOH B 109 476 234 HOH HOH . S 6 HOH B 110 477 235 HOH HOH . S 6 HOH B 111 478 237 HOH HOH . S 6 HOH B 112 479 239 HOH HOH . S 6 HOH B 113 480 241 HOH HOH . S 6 HOH B 114 481 245 HOH HOH . S 6 HOH B 115 482 247 HOH HOH . S 6 HOH B 116 483 251 HOH HOH . S 6 HOH B 117 484 252 HOH HOH . S 6 HOH B 118 485 253 HOH HOH . S 6 HOH B 119 486 210 HOH HOH . S 6 HOH B 120 487 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 G14 . . . F 3 -31.721 -28.547 12.212 1 38.58 ? O14 G14 1 A 1 HETATM 2 C C12 G14 . . . F 3 -31.055 -27.964 11.29 1 40.82 ? C12 G14 1 A 1 HETATM 3 O O13 G14 . . . F 3 -30.249 -28.562 10.478 1 39 ? O13 G14 1 A 1 HETATM 4 C C10 G14 . . . F 3 -31.283 -26.504 11.172 1 40.91 ? C10 G14 1 A 1 HETATM 5 C C9 G14 . . . F 3 -30.385 -25.513 10.729 1 40.7 ? C9 G14 1 A 1 HETATM 6 N N8 G14 . . . F 3 -31.063 -24.3 10.8 1 38.75 ? N8 G14 1 A 1 HETATM 7 C C7 G14 . . . F 3 -32.315 -24.587 11.253 1 41.6 ? C7 G14 1 A 1 HETATM 8 N N11 G14 . . . F 3 -32.479 -25.928 11.504 1 40.43 ? N11 G14 1 A 1 HETATM 9 C C6 G14 . . . F 3 -33.259 -23.426 11.396 1 41.16 ? C6 G14 1 A 1 HETATM 10 C C1 G14 . . . F 3 -33.647 -22.703 10.273 1 39.99 ? C1 G14 1 A 1 HETATM 11 C C2 G14 . . . F 3 -34.513 -21.619 10.38 1 39.38 ? C2 G14 1 A 1 HETATM 12 C C3 G14 . . . F 3 -35.027 -21.268 11.617 1 39.95 ? C3 G14 1 A 1 HETATM 13 C C4 G14 . . . F 3 -34.651 -22.006 12.751 1 41.04 ? C4 G14 1 A 1 HETATM 14 C C5 G14 . . . F 3 -33.765 -23.08 12.64 1 40.01 ? C5 G14 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #