data_3GRT
#
_model_server_result.job_id            jMfZ5OaRpzylyUmdRpTudg 
_model_server_result.datetime_utc      '2024-10-13 01:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3grt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":17}' 
#
_entry.id    3GRT 
#
_exptl.entry_id    3GRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              721.846 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-AMINO-4-[4-(4-AMINO-4-CARBOXY-BUTYRYLAMINO)-5,8,19,22-TETRAOXO-1,2-DITHIA-6,9,13,18,21-PENTAAZA-CYCLOTETRACOS-23-YLCARBAMOYL]-BUTYRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         58.68 
_cell.entry_id            3GRT 
_cell.length_a            119.66 
_cell.length_b            84.69 
_cell.length_c            63.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.683331 72.348756 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C27 H47 N9 O10 S2' 
_chem_comp.formula_weight    721.846 
_chem_comp.id                TS2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-AMINO-4-[4-(4-AMINO-4-CARBOXY-BUTYRYLAMINO)-5,8,19,22-TETRAOXO-1,2-DITHIA-6,9,13,18,21-PENTAAZA-CYCLOTETRACOS-23-YLCARBAMOYL]-BUTYRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RING WITH GLUTATHIONE AND SPERMIDINE' 
#
_atom_sites.entry_id                     3GRT 
_atom_sites.fract_transf_matrix[1][1]    0.008357 
_atom_sites.fract_transf_matrix[1][2]    -0.005085 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 479 479 FAD FAD . 
C 3 TS2 A 1 17 17 TS2 TS2 . 
D 4 HOH A 1 480 480 HOH HOH . 
D 4 HOH A 2 484 484 HOH HOH . 
D 4 HOH A 3 485 485 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TS2 . . . C 3 69.163 36.142 18.753 1 15 ? N1 TS2 17 A 1 
HETATM 2 C CA1 TS2 . . . C 3 69.396 35.426 17.471 1 15 ? CA1 TS2 17 A 1 
HETATM 3 C C1 TS2 . . . C 3 69.744 36.39 16.315 1 15 ? C1 TS2 17 A 1 
HETATM 4 O OE1 TS2 . . . C 3 69.886 37.604 16.593 1 15 ? OE1 TS2 17 A 1 
HETATM 5 O OE2 TS2 . . . C 3 69.913 35.932 15.154 1 15 ? OE2 TS2 17 A 1 
HETATM 6 C CB1 TS2 . . . C 3 68.181 34.578 17.138 1 15 ? CB1 TS2 17 A 1 
HETATM 7 C CG1 TS2 . . . C 3 67.096 35.285 16.349 1 15 ? CG1 TS2 17 A 1 
HETATM 8 C CD1 TS2 . . . C 3 66.428 36.458 17.073 1 15 ? CD1 TS2 17 A 1 
HETATM 9 O O1 TS2 . . . C 3 67.053 37.284 17.754 1 15 ? O1 TS2 17 A 1 
HETATM 10 N N2 TS2 . . . C 3 65.116 36.516 16.91 1 15 ? N2 TS2 17 A 1 
HETATM 11 C CA2 TS2 . . . C 3 64.309 37.575 17.48 1 15 ? CA2 TS2 17 A 1 
HETATM 12 C C2 TS2 . . . C 3 62.9 37.006 17.658 1 15 ? C2 TS2 17 A 1 
HETATM 13 O O2 TS2 . . . C 3 62.27 37.165 18.729 1 15 ? O2 TS2 17 A 1 
HETATM 14 C CB2 TS2 . . . C 3 64.283 38.717 16.473 1 15 ? CB2 TS2 17 A 1 
HETATM 15 S SG2 TS2 . . . C 3 62.687 39.576 16.375 1 15 ? SG2 TS2 17 A 1 
HETATM 16 N N3 TS2 . . . C 3 62.445 36.34 16.584 1 15 ? N3 TS2 17 A 1 
HETATM 17 C CA3 TS2 . . . C 3 61.141 35.692 16.448 1 15 ? CA3 TS2 17 A 1 
HETATM 18 C C3 TS2 . . . C 3 60.281 35.544 17.673 1 15 ? C3 TS2 17 A 1 
HETATM 19 O O3 TS2 . . . C 3 59.308 36.288 17.867 1 15 ? O3 TS2 17 A 1 
HETATM 20 N N4 TS2 . . . C 3 61.574 41.476 21.764 1 15 ? N4 TS2 17 A 1 
HETATM 21 C CA4 TS2 . . . C 3 60.706 41.887 22.864 1 15 ? CA4 TS2 17 A 1 
HETATM 22 C C4 TS2 . . . C 3 59.593 40.981 23.406 1 15 ? C4 TS2 17 A 1 
HETATM 23 O O4 TS2 . . . C 3 58.446 41.421 23.405 1 15 ? O4 TS2 17 A 1 
HETATM 24 C C5 TS2 . . . C 3 62.019 42.294 20.806 1 15 ? C5 TS2 17 A 1 
HETATM 25 O O5 TS2 . . . C 3 61.725 43.497 20.728 1 15 ? O5 TS2 17 A 1 
HETATM 26 C CA5 TS2 . . . C 3 62.917 41.666 19.734 1 15 ? CA5 TS2 17 A 1 
HETATM 27 N N5 TS2 . . . C 3 63.28 40.237 19.915 1 15 ? N5 TS2 17 A 1 
HETATM 28 C CB5 TS2 . . . C 3 62.213 41.882 18.392 1 15 ? CB5 TS2 17 A 1 
HETATM 29 S SG5 TS2 . . . C 3 63.182 41.491 16.901 1 15 ? SG5 TS2 17 A 1 
HETATM 30 C CA6 TS2 . . . C 3 64.572 37.028 23.097 1 15 ? CA6 TS2 17 A 1 
HETATM 31 C C6 TS2 . . . C 3 63.367 37.739 23.779 1 15 ? C6 TS2 17 A 1 
HETATM 32 O OE6 TS2 . . . C 3 62.852 37.119 24.746 1 15 ? OE6 TS2 17 A 1 
HETATM 33 O OE7 TS2 . . . C 3 62.922 38.853 23.373 1 15 ? OE7 TS2 17 A 1 
HETATM 34 N N6 TS2 . . . C 3 64.195 35.684 22.534 1 15 ? N6 TS2 17 A 1 
HETATM 35 C CB6 TS2 . . . C 3 65.289 37.905 22.052 1 15 ? CB6 TS2 17 A 1 
HETATM 36 C CG6 TS2 . . . C 3 64.442 38.315 20.843 1 15 ? CG6 TS2 17 A 1 
HETATM 37 C CD6 TS2 . . . C 3 64.169 39.819 20.819 1 15 ? CD6 TS2 17 A 1 
HETATM 38 O O6 TS2 . . . C 3 64.744 40.581 21.608 1 15 ? O6 TS2 17 A 1 
HETATM 39 N N1' TS2 . . . C 3 59.958 39.75 23.821 1 15 ? N1' TS2 17 A 1 
HETATM 40 C C1' TS2 . . . C 3 59.125 38.68 24.387 1 15 ? C1' TS2 17 A 1 
HETATM 41 C C2' TS2 . . . C 3 59.867 37.317 24.728 1 15 ? C2' TS2 17 A 1 
HETATM 42 N N2' TS2 . . . C 3 59.634 35.923 22.427 1 15 ? N2' TS2 17 A 1 
HETATM 43 C C3' TS2 . . . C 3 60.431 36.563 23.486 1 15 ? C3' TS2 17 A 1 
HETATM 44 C C4' TS2 . . . C 3 59.74 34.48 22.737 1 15 ? C4' TS2 17 A 1 
HETATM 45 C C5' TS2 . . . C 3 60.857 33.667 22.009 1 15 ? C5' TS2 17 A 1 
HETATM 46 C C6' TS2 . . . C 3 60.456 33.179 20.587 1 15 ? C6' TS2 17 A 1 
HETATM 47 C C7' TS2 . . . C 3 59.888 34.319 19.758 1 15 ? C7' TS2 17 A 1 
HETATM 48 N N3' TS2 . . . C 3 60.63 34.586 18.525 1 15 ? N3' TS2 17 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#