data_3GRT
#
_model_server_result.job_id            djpUu77lBWffQ_q-tvNlgg 
_model_server_result.datetime_utc      '2024-11-26 16:47:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3grt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":479}' 
#
_entry.id    3GRT 
#
_exptl.entry_id    3GRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         58.68 
_cell.entry_id            3GRT 
_cell.length_a            119.66 
_cell.length_b            84.69 
_cell.length_c            63.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.683331 72.348756 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3GRT 
_atom_sites.fract_transf_matrix[1][1]    0.008357 
_atom_sites.fract_transf_matrix[1][2]    -0.005085 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013822 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 479 479 FAD FAD . 
C 3 TS2 A 1 17 17 TS2 TS2 . 
D 4 HOH A 1 480 480 HOH HOH . 
D 4 HOH A 2 484 484 HOH HOH . 
D 4 HOH A 3 485 485 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 58.951 50.924 20.503 1 10.02 ? PA FAD 479 A 1 
HETATM 2 O O1A FAD . . . B 2 59.397 51.995 19.635 1 6.98 ? O1A FAD 479 A 1 
HETATM 3 O O2A FAD . . . B 2 59.331 49.565 20.057 1 11.12 ? O2A FAD 479 A 1 
HETATM 4 O O5B FAD . . . B 2 57.383 50.837 20.423 1 9.21 ? O5B FAD 479 A 1 
HETATM 5 C C5B FAD . . . B 2 56.285 51.671 20.631 1 15.28 ? C5B FAD 479 A 1 
HETATM 6 C C4B FAD . . . B 2 55.047 51.048 19.929 1 16.31 ? C4B FAD 479 A 1 
HETATM 7 O O4B FAD . . . B 2 53.885 51.613 20.456 1 18.63 ? O4B FAD 479 A 1 
HETATM 8 C C3B FAD . . . B 2 54.899 51.138 18.427 1 15.94 ? C3B FAD 479 A 1 
HETATM 9 O O3B FAD . . . B 2 54.28 50.092 17.68 1 17.14 ? O3B FAD 479 A 1 
HETATM 10 C C2B FAD . . . B 2 54.075 52.387 18.425 1 14.5 ? C2B FAD 479 A 1 
HETATM 11 O O2B FAD . . . B 2 53.381 52.486 17.209 1 18.68 ? O2B FAD 479 A 1 
HETATM 12 C C1B FAD . . . B 2 53.063 52.179 19.48 1 17.13 ? C1B FAD 479 A 1 
HETATM 13 N N9A FAD . . . B 2 52.306 53.409 19.948 1 15.78 ? N9A FAD 479 A 1 
HETATM 14 C C8A FAD . . . B 2 52.779 54.693 20.151 1 16.57 ? C8A FAD 479 A 1 
HETATM 15 N N7A FAD . . . B 2 51.924 55.508 20.684 1 15.13 ? N7A FAD 479 A 1 
HETATM 16 C C5A FAD . . . B 2 50.775 54.751 20.799 1 18.64 ? C5A FAD 479 A 1 
HETATM 17 C C6A FAD . . . B 2 49.514 55.08 21.272 1 15.27 ? C6A FAD 479 A 1 
HETATM 18 N N6A FAD . . . B 2 49.232 56.247 21.78 1 13.43 ? N6A FAD 479 A 1 
HETATM 19 N N1A FAD . . . B 2 48.597 54.082 21.309 1 17.93 ? N1A FAD 479 A 1 
HETATM 20 C C2A FAD . . . B 2 48.865 52.854 20.828 1 14.56 ? C2A FAD 479 A 1 
HETATM 21 N N3A FAD . . . B 2 50.063 52.454 20.371 1 19.13 ? N3A FAD 479 A 1 
HETATM 22 C C4A FAD . . . B 2 50.983 53.463 20.372 1 18.74 ? C4A FAD 479 A 1 
HETATM 23 N N1 FAD . . . B 2 67.776 48.627 19.544 1 11.65 ? N1 FAD 479 A 1 
HETATM 24 C C2 FAD . . . B 2 68.565 47.475 19.705 1 4.5 ? C2 FAD 479 A 1 
HETATM 25 O O2 FAD . . . B 2 69.562 48.3 19.777 1 4.77 ? O2 FAD 479 A 1 
HETATM 26 N N3 FAD . . . B 2 69.246 46.905 18.664 1 12.3 ? N3 FAD 479 A 1 
HETATM 27 C C4 FAD . . . B 2 69.563 47.384 17.435 1 12.6 ? C4 FAD 479 A 1 
HETATM 28 O O4 FAD . . . B 2 70.225 46.919 16.572 1 22.46 ? O4 FAD 479 A 1 
HETATM 29 C C4X FAD . . . B 2 68.848 48.713 17.172 1 12.42 ? C4X FAD 479 A 1 
HETATM 30 N N5 FAD . . . B 2 68.888 49.368 16.058 1 14.8 ? N5 FAD 479 A 1 
HETATM 31 C C5X FAD . . . B 2 68.104 50.481 15.757 1 12.61 ? C5X FAD 479 A 1 
HETATM 32 C C6 FAD . . . B 2 68.186 51.033 14.478 1 9.05 ? C6 FAD 479 A 1 
HETATM 33 C C7 FAD . . . B 2 67.334 52.087 14.073 1 11.24 ? C7 FAD 479 A 1 
HETATM 34 C C7M FAD . . . B 2 67.433 52.403 13.173 1 5.14 ? C7M FAD 479 A 1 
HETATM 35 C C8 FAD . . . B 2 66.432 52.6 15.058 1 10.47 ? C8 FAD 479 A 1 
HETATM 36 C C8M FAD . . . B 2 65.787 53.317 14.909 1 16 ? C8M FAD 479 A 1 
HETATM 37 C C9 FAD . . . B 2 66.39 52.103 16.354 1 15.43 ? C9 FAD 479 A 1 
HETATM 38 C C9A FAD . . . B 2 67.168 50.995 16.755 1 10.86 ? C9A FAD 479 A 1 
HETATM 39 N N10 FAD . . . B 2 67.221 50.3 18.024 1 9.1 ? N10 FAD 479 A 1 
HETATM 40 C C10 FAD . . . B 2 67.913 49.187 18.3 1 5.92 ? C10 FAD 479 A 1 
HETATM 41 C C1' FAD . . . B 2 66.495 50.828 19.189 1 3.69 ? C1' FAD 479 A 1 
HETATM 42 C C2' FAD . . . B 2 65.297 50.005 19.383 1 6.89 ? C2' FAD 479 A 1 
HETATM 43 O O2' FAD . . . B 2 64.66 49.996 18.154 1 11.85 ? O2' FAD 479 A 1 
HETATM 44 C C3' FAD . . . B 2 64.447 50.765 20.406 1 9.6 ? C3' FAD 479 A 1 
HETATM 45 O O3' FAD . . . B 2 65.274 51.318 21.426 1 14.07 ? O3' FAD 479 A 1 
HETATM 46 C C4' FAD . . . B 2 63.313 49.889 20.886 1 11.11 ? C4' FAD 479 A 1 
HETATM 47 O O4' FAD . . . B 2 62.647 49.685 19.705 1 8.14 ? O4' FAD 479 A 1 
HETATM 48 C C5' FAD . . . B 2 62.468 50.622 21.915 1 10.67 ? C5' FAD 479 A 1 
HETATM 49 O O5' FAD . . . B 2 61.463 49.96 22.648 1 16.94 ? O5' FAD 479 A 1 
HETATM 50 P P FAD . . . B 2 60.152 50.679 23.206 1 9.82 ? P FAD 479 A 1 
HETATM 51 O O1P FAD . . . B 2 59.279 49.613 23.751 1 15.86 ? O1P FAD 479 A 1 
HETATM 52 O O2P FAD . . . B 2 60.335 51.87 24.085 1 12.58 ? O2P FAD 479 A 1 
HETATM 53 O O3P FAD . . . B 2 59.541 51.22 21.893 1 4.95 ? O3P FAD 479 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#