data_3GRT # _model_server_result.job_id vMAvWUh_XnnYICcFthisbw _model_server_result.datetime_utc '2024-10-13 01:18:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3grt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":479}' # _entry.id 3GRT # _exptl.entry_id 3GRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 58.68 _cell.entry_id 3GRT _cell.length_a 119.66 _cell.length_b 84.69 _cell.length_c 63.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'B 1 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.683331 72.348756 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 58 1_555 A SG CYS 46 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 73 A CYS 90 1_555 A SG CYS 73 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GRT _atom_sites.fract_transf_matrix[1][1] 0.008357 _atom_sites.fract_transf_matrix[1][2] -0.005085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013822 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 479 479 FAD FAD . C 3 TS2 A 1 17 17 TS2 TS2 . D 4 HOH A 1 480 480 HOH HOH . D 4 HOH A 2 484 484 HOH HOH . D 4 HOH A 3 485 485 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 58.951 50.924 20.503 1 10.02 ? PA FAD 479 A 1 HETATM 2 O O1A FAD . . . B 2 59.397 51.995 19.635 1 6.98 ? O1A FAD 479 A 1 HETATM 3 O O2A FAD . . . B 2 59.331 49.565 20.057 1 11.12 ? O2A FAD 479 A 1 HETATM 4 O O5B FAD . . . B 2 57.383 50.837 20.423 1 9.21 ? O5B FAD 479 A 1 HETATM 5 C C5B FAD . . . B 2 56.285 51.671 20.631 1 15.28 ? C5B FAD 479 A 1 HETATM 6 C C4B FAD . . . B 2 55.047 51.048 19.929 1 16.31 ? C4B FAD 479 A 1 HETATM 7 O O4B FAD . . . B 2 53.885 51.613 20.456 1 18.63 ? O4B FAD 479 A 1 HETATM 8 C C3B FAD . . . B 2 54.899 51.138 18.427 1 15.94 ? C3B FAD 479 A 1 HETATM 9 O O3B FAD . . . B 2 54.28 50.092 17.68 1 17.14 ? O3B FAD 479 A 1 HETATM 10 C C2B FAD . . . B 2 54.075 52.387 18.425 1 14.5 ? C2B FAD 479 A 1 HETATM 11 O O2B FAD . . . B 2 53.381 52.486 17.209 1 18.68 ? O2B FAD 479 A 1 HETATM 12 C C1B FAD . . . B 2 53.063 52.179 19.48 1 17.13 ? C1B FAD 479 A 1 HETATM 13 N N9A FAD . . . B 2 52.306 53.409 19.948 1 15.78 ? N9A FAD 479 A 1 HETATM 14 C C8A FAD . . . B 2 52.779 54.693 20.151 1 16.57 ? C8A FAD 479 A 1 HETATM 15 N N7A FAD . . . B 2 51.924 55.508 20.684 1 15.13 ? N7A FAD 479 A 1 HETATM 16 C C5A FAD . . . B 2 50.775 54.751 20.799 1 18.64 ? C5A FAD 479 A 1 HETATM 17 C C6A FAD . . . B 2 49.514 55.08 21.272 1 15.27 ? C6A FAD 479 A 1 HETATM 18 N N6A FAD . . . B 2 49.232 56.247 21.78 1 13.43 ? N6A FAD 479 A 1 HETATM 19 N N1A FAD . . . B 2 48.597 54.082 21.309 1 17.93 ? N1A FAD 479 A 1 HETATM 20 C C2A FAD . . . B 2 48.865 52.854 20.828 1 14.56 ? C2A FAD 479 A 1 HETATM 21 N N3A FAD . . . B 2 50.063 52.454 20.371 1 19.13 ? N3A FAD 479 A 1 HETATM 22 C C4A FAD . . . B 2 50.983 53.463 20.372 1 18.74 ? C4A FAD 479 A 1 HETATM 23 N N1 FAD . . . B 2 67.776 48.627 19.544 1 11.65 ? N1 FAD 479 A 1 HETATM 24 C C2 FAD . . . B 2 68.565 47.475 19.705 1 4.5 ? C2 FAD 479 A 1 HETATM 25 O O2 FAD . . . B 2 69.562 48.3 19.777 1 4.77 ? O2 FAD 479 A 1 HETATM 26 N N3 FAD . . . B 2 69.246 46.905 18.664 1 12.3 ? N3 FAD 479 A 1 HETATM 27 C C4 FAD . . . B 2 69.563 47.384 17.435 1 12.6 ? C4 FAD 479 A 1 HETATM 28 O O4 FAD . . . B 2 70.225 46.919 16.572 1 22.46 ? O4 FAD 479 A 1 HETATM 29 C C4X FAD . . . B 2 68.848 48.713 17.172 1 12.42 ? C4X FAD 479 A 1 HETATM 30 N N5 FAD . . . B 2 68.888 49.368 16.058 1 14.8 ? N5 FAD 479 A 1 HETATM 31 C C5X FAD . . . B 2 68.104 50.481 15.757 1 12.61 ? C5X FAD 479 A 1 HETATM 32 C C6 FAD . . . B 2 68.186 51.033 14.478 1 9.05 ? C6 FAD 479 A 1 HETATM 33 C C7 FAD . . . B 2 67.334 52.087 14.073 1 11.24 ? C7 FAD 479 A 1 HETATM 34 C C7M FAD . . . B 2 67.433 52.403 13.173 1 5.14 ? C7M FAD 479 A 1 HETATM 35 C C8 FAD . . . B 2 66.432 52.6 15.058 1 10.47 ? C8 FAD 479 A 1 HETATM 36 C C8M FAD . . . B 2 65.787 53.317 14.909 1 16 ? C8M FAD 479 A 1 HETATM 37 C C9 FAD . . . B 2 66.39 52.103 16.354 1 15.43 ? C9 FAD 479 A 1 HETATM 38 C C9A FAD . . . B 2 67.168 50.995 16.755 1 10.86 ? C9A FAD 479 A 1 HETATM 39 N N10 FAD . . . B 2 67.221 50.3 18.024 1 9.1 ? N10 FAD 479 A 1 HETATM 40 C C10 FAD . . . B 2 67.913 49.187 18.3 1 5.92 ? C10 FAD 479 A 1 HETATM 41 C C1' FAD . . . B 2 66.495 50.828 19.189 1 3.69 ? C1' FAD 479 A 1 HETATM 42 C C2' FAD . . . B 2 65.297 50.005 19.383 1 6.89 ? C2' FAD 479 A 1 HETATM 43 O O2' FAD . . . B 2 64.66 49.996 18.154 1 11.85 ? O2' FAD 479 A 1 HETATM 44 C C3' FAD . . . B 2 64.447 50.765 20.406 1 9.6 ? C3' FAD 479 A 1 HETATM 45 O O3' FAD . . . B 2 65.274 51.318 21.426 1 14.07 ? O3' FAD 479 A 1 HETATM 46 C C4' FAD . . . B 2 63.313 49.889 20.886 1 11.11 ? C4' FAD 479 A 1 HETATM 47 O O4' FAD . . . B 2 62.647 49.685 19.705 1 8.14 ? O4' FAD 479 A 1 HETATM 48 C C5' FAD . . . B 2 62.468 50.622 21.915 1 10.67 ? C5' FAD 479 A 1 HETATM 49 O O5' FAD . . . B 2 61.463 49.96 22.648 1 16.94 ? O5' FAD 479 A 1 HETATM 50 P P FAD . . . B 2 60.152 50.679 23.206 1 9.82 ? P FAD 479 A 1 HETATM 51 O O1P FAD . . . B 2 59.279 49.613 23.751 1 15.86 ? O1P FAD 479 A 1 HETATM 52 O O2P FAD . . . B 2 60.335 51.87 24.085 1 12.58 ? O2P FAD 479 A 1 HETATM 53 O O3P FAD . . . B 2 59.541 51.22 21.893 1 4.95 ? O3P FAD 479 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 53 #